Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGC  >  NC_000913/1271771‑1271957
                                                                                             |                                                                                             
GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGG                                                                                               <  SRR4302540.6396316/94‑1 (MQ=60)
GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGA                                                                                               <  SRR4302540.6934261/94‑1 (MQ=60)
  CATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCC                                                                                             <  SRR4302540.5666667/94‑1 (MQ=60)
   cttttgttCCATTGAACAATCACTCTTATTGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCG                                                                                            <  SRR4302540.2643574/86‑1 (MQ=60)
   ATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCG                                                                                            >  SRR4302540.9230815/1‑94 (MQ=60)
   ATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCG                                                                                            >  SRR4302540.831736/1‑94 (MQ=60)
     TTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGT                                                                                          <  SRR4302540.9972179/94‑1 (MQ=60)
     TTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGT                                                                                          >  SRR4302540.2811820/1‑94 (MQ=60)
     TTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGT                                                                                          <  SRR4302540.2398942/94‑1 (MQ=60)
      TGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTG                                                                                         <  SRR4302540.3042085/94‑1 (MQ=60)
      TGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTG                                                                                         <  SRR4302540.9329141/94‑1 (MQ=60)
      TGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTG                                                                                         <  SRR4302540.3474778/94‑1 (MQ=60)
       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGT                                                                                        <  SRR4302540.5907397/94‑1 (MQ=60)
       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGT                                                                                        <  SRR4302540.5802973/94‑1 (MQ=60)
       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGT                                                                                        <  SRR4302540.6127960/94‑1 (MQ=60)
           CCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGAT                                                                                    >  SRR4302540.5135333/1‑94 (MQ=60)
           CCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGAT                                                                                    <  SRR4302540.9486801/94‑1 (MQ=60)
            CATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATC                                                                                   >  SRR4302540.393047/1‑94 (MQ=60)
             ATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCT                                                                                  <  SRR4302540.5999466/94‑1 (MQ=60)
             ATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCT                                                                                  <  SRR4302540.8811472/94‑1 (MQ=60)
             ATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCT                                                                                  >  SRR4302540.5705169/1‑94 (MQ=60)
              TTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTT                                                                                 <  SRR4302540.2020734/94‑1 (MQ=60)
               TGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTC                                                                                >  SRR4302540.2308100/1‑94 (MQ=60)
               TGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTC                                                                                >  SRR4302540.1807711/1‑94 (MQ=60)
                GAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCG                                                                               <  SRR4302540.968198/94‑1 (MQ=60)
                 AAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGGTCTTCGG                                                                              >  SRR4302540.8177646/1‑94 (MQ=60)
                 AAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGG                                                                              <  SRR4302540.8650470/94‑1 (MQ=60)
                  AGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGC                                                                             >  SRR4302540.9538838/1‑94 (MQ=60)
                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCT                                                                            <  SRR4302540.1961044/94‑1 (MQ=60)
                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGGGTGGATCTTCGGCT                                                                            >  SRR4302540.8493808/1‑94 (MQ=60)
                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCT                                                                            >  SRR4302540.1938713/1‑94 (MQ=60)
                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGCGCCGGTGCGGAGCTTCGGCT                                                                            >  SRR4302540.8493813/1‑94 (MQ=60)
                     ATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTAT                                                                          >  SRR4302540.533532/1‑94 (MQ=60)
                      TCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATG                                                                         <  SRR4302540.5984155/94‑1 (MQ=60)
                       CGCTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGG                                                                        <  SRR4302540.10051061/94‑1 (MQ=60)
                       CACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGG                                                                        <  SRR4302540.3058151/94‑1 (MQ=60)
                        CCTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTGGTCGCCCTGATGAGGGGCAGGTGTGGATCTTCGGCTATGGA                                                                       <  SRR4302540.6396325/94‑1 (MQ=60)
                         CTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGAT                                                                      <  SRR4302540.7699287/94‑1 (MQ=60)
                         CTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGAT                                                                      <  SRR4302540.7698978/94‑1 (MQ=60)
                         CTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGAT                                                                      <  SRR4302540.3630861/94‑1 (MQ=60)
                          TCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATC                                                                     <  SRR4302540.7893694/94‑1 (MQ=60)
                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCG                                                                    <  SRR4302540.892286/94‑1 (MQ=60)
                            TTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGT                                                                   <  SRR4302540.2869370/94‑1 (MQ=60)
                            TTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGT                                                                   >  SRR4302540.6809686/1‑94 (MQ=60)
                             TATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTT                                                                  <  SRR4302540.6662731/94‑1 (MQ=60)
                                GGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAT                                                               >  SRR4302540.5425135/1‑94 (MQ=60)
                                 GTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATG                                                              <  SRR4302540.8031254/94‑1 (MQ=60)
                                    AGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGG                                                           <  SRR4302540.4798442/94‑1 (MQ=60)
                                     GCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGA                                                          <  SRR4302540.8637459/94‑1 (MQ=60)
                                     GCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGA                                                          <  SRR4302540.3926158/94‑1 (MQ=60)
                                      CAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAA                                                         <  SRR4302540.2248829/94‑1 (MQ=60)
                                       ATAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAAT                                                        <  SRR4302540.7387263/94‑1 (MQ=60)
                                       AGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAAT                                                        <  SRR4302540.7869487/94‑1 (MQ=60)
                                       AGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCATCGGCTATGGATCCTTGATGTGGGAT                                                        >  SRR4302540.4390470/1‑94 (MQ=60)
                                        GAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATC                                                       >  SRR4302540.7655749/1‑94 (MQ=60)
                                          ACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCG                                                     <  SRR4302540.3825842/94‑1 (MQ=60)
                                          ACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCG                                                     >  SRR4302540.8296665/1‑94 (MQ=60)
                                          ACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCG                                                     >  SRR4302540.2776772/1‑94 (MQ=60)
                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                    <  SRR4302540.5035375/94‑1 (MQ=60)
                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                    <  SRR4302540.1957844/94‑1 (MQ=60)
                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                    <  SRR4302540.1957846/94‑1 (MQ=60)
                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                    >  SRR4302540.9605708/1‑94 (MQ=60)
                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                    >  SRR4302540.9605902/1‑94 (MQ=60)
                                            AACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGC                                                   <  SRR4302540.8310663/94‑1 (MQ=60)
                                              CGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAC                                                 >  SRR4302540.3138056/1‑94 (MQ=60)
                                                 GCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGG                                              <  SRR4302540.924718/94‑1 (MQ=60)
                                                  CGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGA                                             >  SRR4302540.5910477/1‑94 (MQ=60)
                                                  CGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGA                                             >  SRR4302540.4648608/1‑94 (MQ=60)
                                                  CGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGA                                             >  SRR4302540.982924/1‑94 (MQ=60)
                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAG                                            <  SRR4302540.7528368/94‑1 (MQ=60)
                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAG                                            <  SRR4302540.1677137/94‑1 (MQ=60)
                                                    GCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGT                                           >  SRR4302540.1289062/1‑94 (MQ=60)
                                                    GCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGT                                           <  SRR4302540.7748809/94‑1 (MQ=60)
                                                     CTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTT                                          >  SRR4302540.3434929/1‑94 (MQ=60)
                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                         <  SRR4302540.7049570/94‑1 (MQ=60)
                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                         >  SRR4302540.7993000/1‑94 (MQ=60)
                                                      CTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                         <  SRR4302540.9648142/94‑1 (MQ=60)
                                                          CTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCG                                     <  SRR4302540.7510529/94‑1 (MQ=60)
                                                          CTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCG                                     >  SRR4302540.7283982/1‑94 (MQ=60)
                                                          CTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCG                                     >  SRR4302540.10138853/1‑94 (MQ=60)
                                                           TGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGA                                    >  SRR4302540.2267373/1‑94 (MQ=60)
                                                            GGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAA                                   <  SRR4302540.4052619/94‑1 (MQ=60)
                                                              CGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATC                                 >  SRR4302540.6474818/1‑94 (MQ=60)
                                                               GGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCG                                <  SRR4302540.2075036/94‑1 (MQ=60)
                                                                   ACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCA                            <  SRR4302540.1656154/94‑1 (MQ=60)
                                                                   ACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCA                            <  SRR4302540.1071205/94‑1 (MQ=60)
                                                                    CGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGCTTACCGAATCGTGCAC                           >  SRR4302540.5926710/1‑94 (MQ=60)
                                                                      CTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCG                         >  SRR4302540.1300723/1‑94 (MQ=60)
                                                                      CTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCG                         >  SRR4302540.1509388/1‑94 (MQ=60)
                                                                      CTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCG                         <  SRR4302540.6166512/94‑1 (MQ=60)
                                                                        GGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGT                       <  SRR4302540.7419606/94‑1 (MQ=60)
                                                                          CTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTAC                     <  SRR4302540.4906557/94‑1 (MQ=60)
                                                                           TTGTCGACCTGATGAGGGGCTGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACA                    <  SRR4302540.6323156/94‑1 (MQ=60)
                                                                           TTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACA                    <  SRR4302540.8325511/94‑1 (MQ=60)
                                                                            TGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACAC                   <  SRR4302540.1741978/94‑1 (MQ=60)
                                                                             GTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACT                  <  SRR4302540.7023460/94‑1 (MQ=60)
                                                                              TCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTG                 <  SRR4302540.2598743/94‑1 (MQ=60)
                                                                                GACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGT               >  SRR4302540.7518558/1‑94 (MQ=60)
                                                                                 AGCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTT              <  SRR4302540.9834266/94‑1 (MQ=60)
                                                                                   CTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGCGTTTACCGAATCGTGCTCCGGTACACTGGTTGC            >  SRR4302540.4589507/1‑94 (MQ=60)
                                                                                   CTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGG            >  SRR4302540.817080/1‑94 (MQ=60)
                                                                                   CTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACatcaacgatccataagcgctagatcgg            >  SRR4302540.5511646/1‑67 (MQ=60)
                                                                                     GATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGAT          <  SRR4302540.9872799/94‑1 (MQ=60)
                                                                                     GATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGAT          <  SRR4302540.9638909/94‑1 (MQ=60)
                                                                                     GATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCTGTACACTGGTTGGAT          <  SRR4302540.5896515/94‑1 (MQ=60)
                                                                                     GATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCTGTACACTGGTTGGAT          <  SRR4302540.5896516/94‑1 (MQ=60)
                                                                                     GATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGAT          >  SRR4302540.3977949/1‑94 (MQ=60)
                                                                                     GATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGAT          <  SRR4302540.7424558/94‑1 (MQ=60)
                                                                                         AGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCT      >  SRR4302540.368556/1‑94 (MQ=60)
                                                                                         AGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCA      >  SRR4302540.96910/1‑94 (MQ=60)
                                                                                            GACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCG   <  SRR4302540.6443061/94‑1 (MQ=60)
                                                                                             ACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGC  <  SRR4302540.3703311/94‑1 (MQ=60)
                                                                                             ACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGC  >  SRR4302540.9316818/1‑94 (MQ=60)
                                                                                             |                                                                                             
GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCGC  >  NC_000913/1271771‑1271957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑