Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,271,864	A→G	G52G (GGA→GGG)	chaC →	cation transport regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,271,864	0	A	G	100.0%	706.5 / NA	221	G52G (GGA→GGG)	chaC	cation transport regulator
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/106); total (115/106)

Only 100 of 235 total aligned reads displayed.

TTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCA  >  NC_000913/1271775‑1271953

tttGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCg                                                                                        >  1:3910917/1‑93 (MQ=255)

tttGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCg                                                                                        <  1:2321372/93‑1 (MQ=255)

  tGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGgt                                                                                      <  1:899963/93‑1 (MQ=255)

     tGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGGCGGtgtg                                                                                   >  2:5020475/1‑93 (MQ=255)

      gCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTgg                                                                                  >  2:2353158/1‑93 (MQ=255)

        cATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGAt                                                                                <  2:400801/93‑1 (MQ=255)

        cATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGAt                                                                                >  1:3701004/1‑93 (MQ=255)

            gaagaaTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTc                                                                            <  2:5411883/93‑1 (MQ=255)

             aagaaTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCttag                                                                           >  1:1185266/1‑91 (MQ=255)

               gaaTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGc                                                                         >  1:1324515/1‑93 (MQ=255)

                aaTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCt                                                                        >  1:5693345/1‑93 (MQ=255)

                aaTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCt                                                                        >  1:613605/1‑93 (MQ=255)

                 aTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTa                                                                       >  2:844293/1‑93 (MQ=255)

                 aTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTa                                                                       <  1:2581268/93‑1 (MQ=255)

                 aTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTa                                                                       <  2:5439024/93‑1 (MQ=255)

                 aTCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTa                                                                       <  1:766342/93‑1 (MQ=255)

                  tCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGGTCTTCGGCTAt                                                                      >  1:4481344/1‑93 (MQ=255)

                   cACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATg                                                                     <  1:5759830/93‑1 (MQ=255)

                   cACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATg                                                                     <  1:1058744/93‑1 (MQ=255)

                   cACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATg                                                                     <  2:5005648/93‑1 (MQ=255)

                   cACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATg                                                                     >  1:2003855/1‑93 (MQ=255)

                    aCTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATgg                                                                    <  1:5098646/93‑1 (MQ=255)

                     ctctTATGGTCAGCAGAACAACGGGCAGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGa                                                                   <  2:3603738/93‑1 (MQ=255)

                      tctTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGAt                                                                  <  2:3068157/93‑1 (MQ=255)

                       ctTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATc                                                                 <  1:4201701/93‑1 (MQ=255)

                       ctTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATc                                                                 <  1:2804907/93‑1 (MQ=255)

                        ttATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGGCGGTGTGGATCTTCGGCTATGGATCg                                                                >  1:3837142/1‑93 (MQ=255)

                        ttATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCg                                                                >  2:3657188/1‑93 (MQ=255)

                        ttATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCg                                                                >  2:6158621/1‑93 (MQ=255)

                        ttATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGGGGATCTTCGGCTATGGATCg                                                                >  1:1599138/1‑93 (MQ=255)

                           tGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTg                                                             >  2:2700011/1‑93 (MQ=255)

                           tGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTg                                                             >  1:4281330/1‑93 (MQ=255)

                           tGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTg                                                             >  2:680622/1‑93 (MQ=255)

                            ggTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGa                                                            <  1:6192253/93‑1 (MQ=255)

                              tCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAtg                                                          >  1:3935244/1‑93 (MQ=255)

                               cagcagAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAtgt                                                         <  2:1663862/93‑1 (MQ=255)

                                agcagAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAtgtg                                                        <  2:3560297/93‑1 (MQ=255)

                                  gagAACAACGGGCGGCTTCGCTGGCGTCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGa                                                      <  1:2430432/92‑1 (MQ=255)

                                  cagAACAACGGGCGGCTTCGCTGGCGGCGGCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGa                                                      <  2:5955222/93‑1 (MQ=255)

                                    gAACAAGGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAAt                                                    <  1:749812/93‑1 (MQ=255)

                                    gAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAAt                                                    <  2:1812592/93‑1 (MQ=255)

                                     aacaacGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATc                                                   <  2:913607/93‑1 (MQ=255)

                                     aacaacGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATc                                                   <  1:972244/93‑1 (MQ=255)

                                      acaacGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATcc                                                  <  2:2090564/93‑1 (MQ=255)

                                        aacGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCgg                                                >  2:2241310/1‑93 (MQ=255)

                                         acGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGc                                               >  2:1556830/1‑93 (MQ=255)

                                          cGGGCGGCTTCGCTGGCGGCGGCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCa                                              <  1:4176757/93‑1 (MQ=255)

                                           gggCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAc                                             >  1:5468765/1‑93 (MQ=255)

                                            ggcggcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGGTGATGTGGAATCCGGCACt                                            >  2:6071916/1‑93 (MQ=255)

                                             gcggcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTg                                           >  2:4035212/1‑93 (MQ=255)

                                             gcggcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTg                                           <  2:4511632/93‑1 (MQ=255)

                                               ggcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGa                                         <  2:3227390/93‑1 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  1:3127717/1‑93 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  2:1788026/1‑93 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  1:2047295/1‑93 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  2:5883021/1‑93 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  2:333256/1‑93 (MQ=255)

                                                gcTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAg                                        >  2:4565790/1‑93 (MQ=255)

                                                  ttCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGtt                                      <  1:3677115/93‑1 (MQ=255)

                                                  ttCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGtt                                      <  2:2642273/93‑1 (MQ=255)

                                                   tCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAGTGGAGttt                                     >  2:4240497/1‑93 (MQ=255)

                                                   tCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGGGttt                                     >  2:1963078/1‑93 (MQ=255)

                                                   tCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGttt                                     <  1:679060/93‑1 (MQ=255)

                                                   tCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGttt                                     >  1:1854180/1‑93 (MQ=255)

                                                   tCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGttt                                     >  1:6164931/1‑93 (MQ=255)

                                                    cGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTa                                    <  2:4375365/93‑1 (MQ=255)

                                                    cGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTa                                    <  1:265444/93‑1 (MQ=255)

                                                      cTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTAcc                                  <  1:2450823/93‑1 (MQ=255)

                                                         gcggcgACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGaa                               <  2:3933461/93‑1 (MQ=255)

                                                          cggcgACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAAt                              <  2:3778745/93‑1 (MQ=255)

                                                          cggcgACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAAt                              <  2:2967478/93‑1 (MQ=255)

                                                           ggcgACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATc                             <  2:337449/93‑1 (MQ=255)

                                                            gcgACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCg                            >  2:2744530/1‑93 (MQ=255)

                                                              gACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTg                          >  2:1352732/1‑93 (MQ=255)

                                                              gACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTg                          >  2:4139666/1‑93 (MQ=255)

                                                               aCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGc                         >  1:2874669/1‑93 (MQ=255)

                                                               aCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGc                         <  1:4940210/93‑1 (MQ=255)

                                                               aCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGc                         >  1:4912199/1‑93 (MQ=255)

                                                                 gCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCAc                       >  1:4126512/1‑93 (MQ=255)

                                                                 gCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCAc                       <  1:849067/93‑1 (MQ=255)

                                                                    ggCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCgg                    <  1:5327099/93‑1 (MQ=255)

                                                                    ggCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATAGTGCACCgg                    >  1:2938165/1‑93 (MQ=255)

                                                                      cTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTa                  >  1:2908552/1‑93 (MQ=255)

                                                                      cTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTa                  <  2:2845199/93‑1 (MQ=255)

                                                                        tGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTaca                >  2:3983693/1‑93 (MQ=255)

                                                                        tGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTaca                <  2:5746595/93‑1 (MQ=255)

                                                                          tCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACt              <  2:3272671/93‑1 (MQ=255)

                                                                          tCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACt              <  2:5200614/93‑1 (MQ=255)

                                                                          tCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACt              <  2:5921615/93‑1 (MQ=255)

                                                                           cGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTg             <  1:4844541/93‑1 (MQ=255)

                                                                            gACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTgg            >  1:3451691/1‑93 (MQ=255)

                                                                             aCCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGt           >  1:4785669/1‑93 (MQ=255)

                                                                             aCCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGt           >  1:1732771/1‑93 (MQ=255)

                                                                              ccTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGtt          <  2:3186159/93‑1 (MQ=255)

                                                                              ccTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGtt          <  1:5017038/93‑1 (MQ=255)

                                                                               cTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTg         >  1:3336751/1‑93 (MQ=255)

                                                                               cTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTg         <  2:4639226/93‑1 (MQ=255)

                                                                                 gatgaGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCAGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGa       <  1:4445874/93‑1 (MQ=255)

                                                                                    gaGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATgg    >  1:1981829/1‑93 (MQ=255)

                                                                                      ggggCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCa  <  1:5219464/93‑1 (MQ=255)

TTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCA  >  NC_000913/1271775‑1271953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCG  >  NC_000913/1271771‑1271956

GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGG                                                                                              <  SRR4302533.157329/94‑1 (MQ=60)

GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGG                                                                                              <  SRR4302533.3931146/94‑1 (MQ=60)

  CATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCC                                                                                            <  SRR4302533.5976965/94‑1 (MQ=60)

  CATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCC                                                                                            <  SRR4302533.749457/94‑1 (MQ=60)

   ATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCG                                                                                           >  SRR4302533.3934800/1‑94 (MQ=60)

   ATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGGCGACCTGATGACGGGCCG                                                                                           >  SRR4302533.5637740/1‑94 (MQ=60)

    TTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGG                                                                                          <  SRR4302533.2335740/94‑1 (MQ=60)

      TGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTG                                                                                        <  SRR4302533.905243/94‑1 (MQ=60)

       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGT                                                                                       <  SRR4302533.5350369/94‑1 (MQ=60)

       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGT                                                                                       <  SRR4302533.3803042/94‑1 (MQ=60)

       GGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGT                                                                                       <  SRR4302533.6127530/94‑1 (MQ=60)

         TGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGG                                                                                     <  SRR4302533.4091903/94‑1 (MQ=60)

           CCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGAT                                                                                   >  SRR4302533.3723733/1‑94 (MQ=60)

            CATTGAAGTATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGGGGGTC                                                                                  >  SRR4302533.894892/1‑94 (MQ=60)

            CATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATC                                                                                  >  SRR4302533.1552185/1‑94 (MQ=60)

              TTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTT                                                                                >  SRR4302533.2581241/1‑94 (MQ=60)

                GAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCG                                                                              <  SRR4302533.178423/94‑1 (MQ=60)

                GAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTAG                                                                              >  SRR4302533.1192380/1‑94 (MQ=60)

                 AAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGG                                                                             <  SRR4302533.5106436/94‑1 (MQ=60)

                 AAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGG                                                                             >  SRR4302533.3427965/1‑94 (MQ=60)

                  AGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGC                                                                            >  SRR4302533.1332459/1‑94 (MQ=60)

                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCT                                                                           <  SRR4302533.189564/94‑1 (MQ=60)

                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCT                                                                           >  SRR4302533.617212/1‑94 (MQ=60)

                   GAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCT                                                                           >  SRR4302533.5727726/1‑94 (MQ=60)

                     ATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGGTCTTCGGCTAT                                                                         >  SRR4302533.4508454/1‑94 (MQ=60)

                     ATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTAT                                                                         <  SRR4302533.2597147/94‑1 (MQ=60)

                     ATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTAT                                                                         <  SRR4302533.770863/94‑1 (MQ=60)

                      TCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATG                                                                        >  SRR4302533.2016196/1‑94 (MQ=60)

                       CACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGG                                                                       <  SRR4302533.1064970/94‑1 (MQ=60)

                       CACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGG                                                                       <  SRR4302533.5794586/94‑1 (MQ=60)

                        ACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGA                                                                      <  SRR4302533.5129450/94‑1 (MQ=60)

                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGGCGGTGTGGATCTTCGGCTATGGATCG                                                                   >  SRR4302533.3860585/1‑94 (MQ=60)

                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCG                                                                   <  SRR4302533.3832466/94‑1 (MQ=60)

                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCG                                                                   <  SRR4302533.2822171/94‑1 (MQ=60)

                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCG                                                                   <  SRR4302533.4227123/94‑1 (MQ=60)

                           CTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGGGGATCTTCGGCTATGGATCG                                                                   >  SRR4302533.1608819/1‑94 (MQ=60)

                              ATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTG                                                                >  SRR4302533.4307066/1‑94 (MQ=60)

                               TGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGT                                                               >  SRR4302533.4962600/1‑94 (MQ=60)

                                GGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAT                                                              <  SRR4302533.6229413/94‑1 (MQ=60)

                                GGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGAT                                                              <  SRR4302533.5790579/94‑1 (MQ=60)

                                 GTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTTGGCTATGGATCGTTGATG                                                             >  SRR4302533.6306408/1‑94 (MQ=60)

                                 GTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATG                                                             >  SRR4302533.3959267/1‑94 (MQ=60)

                                   CAGCAGAACAACGGGCGGCTTCGCTGGCGGGGACGCTGGCTTGTCGACCTGATGGGGGGCCGGGGTGGATCTTCGGCTATGGGTCGTTGATGTG                                                           >  SRR4302533.807112/1‑94 (MQ=60)

                                      GAGAACAACGGGCGGCTTCGCTGGCGTCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAA                                                        <  SRR4302533.2445455/94‑1 (MQ=60)

                                      CAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAA                                                        >  SRR4302533.2017312/1‑94 (MQ=60)

                                      CAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAA                                                        >  SRR4302533.5009060/1‑94 (MQ=60)

                                       AGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAAT                                                       <  SRR4302533.4254318/94‑1 (MQ=60)

                                        GAACAAGGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATC                                                      <  SRR4302533.754227/94‑1 (MQ=60)

                                        GAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATC                                                      <  SRR4302533.5182095/94‑1 (MQ=60)

                                         AACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCC                                                     <  SRR4302533.3948697/94‑1 (MQ=60)

                                         AACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCC                                                     <  SRR4302533.977953/94‑1 (MQ=60)

                                          ACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCG                                                    <  SRR4302533.754630/94‑1 (MQ=60)

                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                   >  SRR4302533.5134107/1‑94 (MQ=60)

                                           CAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGG                                                   >  SRR4302533.5390301/1‑94 (MQ=60)

                                              CGGGCGGCTTCGCTGGCGGCGGCGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAC                                                <  SRR4302533.4202064/94‑1 (MQ=60)

                                              CGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAC                                                >  SRR4302533.5501725/1‑94 (MQ=60)

                                              CGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAC                                                <  SRR4302533.2657940/94‑1 (MQ=60)

                                              CGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGGGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCAC                                                >  SRR4302533.4160120/1‑94 (MQ=60)

                                               GGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGATGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACT                                               >  SRR4302533.3392044/1‑94 (MQ=60)

                                               GGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACT                                               <  SRR4302533.6174666/94‑1 (MQ=60)

                                               GGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACT                                               >  SRR4302533.402616/1‑94 (MQ=60)

                                               GGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACT                                               >  SRR4302533.24652/1‑94 (MQ=60)

                                                 GCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGG                                             <  SRR4302533.4288218/94‑1 (MQ=60)

                                                  CGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGG                                            >  SRR4302533.285605/1‑94 (MQ=60)

                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGGACTGGAG                                           >  SRR4302533.274494/1‑94 (MQ=60)

                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAG                                           >  SRR4302533.2059919/1‑94 (MQ=60)

                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAG                                           >  SRR4302533.3146942/1‑94 (MQ=60)

                                                   GGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAG                                           <  SRR4302533.4799848/94‑1 (MQ=60)

                                                   GGCTTCGCTGGCGGCGACGCGGGCTTGGCGACCCGATGAGGGGCCGGTGTGGATCTTCGGCCACGGATCGGGGATGGGGAAACCGGCACGGGAG                                           >  SRR4302533.6337821/1‑94 (MQ=36)

                                                    GCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGT                                          <  SRR4302533.6205565/94‑1 (MQ=60)

                                                     CTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGGTCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTT                                         >  SRR4302533.2952227/1‑94 (MQ=60)

                                                     CTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTT                                         >  SRR4302533.4403838/1‑94 (MQ=60)

                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                        <  SRR4302533.3699715/94‑1 (MQ=60)

                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                        >  SRR4302533.1865484/1‑94 (MQ=60)

                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                        >  SRR4302533.6201992/1‑94 (MQ=60)

                                                      TTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTT                                        <  SRR4302533.3699714/94‑1 (MQ=60)

                                                       TCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTA                                       <  SRR4302533.683073/94‑1 (MQ=60)

                                                        CGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTAC                                      <  SRR4302533.267060/94‑1 (MQ=60)

                                                          CTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCG                                    <  SRR4302533.2465952/94‑1 (MQ=60)

                                                          CTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGGTGATGTGGGATCCGGCACTGGAGTTTACCG                                    >  SRR4302533.744322/1‑94 (MQ=60)

                                                           TGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGA                                   >  SRR4302533.2485365/1‑94 (MQ=60)

                                                            GGCGGCGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGCTTACCGAA                                  <  SRR4302533.1876014/94‑1 (MQ=60)

                                                                 CGACTCTGGCTTGCCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTG                             <  SRR4302533.2249401/94‑1 (MQ=60)

                                                                 CGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTG                             <  SRR4302533.4506284/94‑1 (MQ=60)

                                                                 CGACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTG                             <  SRR4302533.2398551/94‑1 (MQ=60)

                                                                  GACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGC                            >  SRR4302533.2892355/1‑94 (MQ=60)

                                                                  GACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGC                            >  SRR4302533.4941954/1‑94 (MQ=60)

                                                                  GACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGA                            >  SRR4302533.2892357/1‑94 (MQ=60)

                                                                   ACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCA                           <  SRR4302533.936383/94‑1 (MQ=60)

                                                                   ACGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCA                           <  SRR4302533.4970118/94‑1 (MQ=60)

                                                                    CGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCAC                          >  SRR4302533.4151562/1‑94 (MQ=60)

                                                                    CGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCAC                          >  SRR4302533.4202183/1‑94 (MQ=60)

                                                                    CGCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCAC                          >  SRR4302533.5382273/1‑94 (MQ=60)

                                                                     GCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACC                         <  SRR4302533.854037/94‑1 (MQ=60)

                                                                     GCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACC                         >  SRR4302533.4813294/1‑94 (MQ=60)

                                                                     GCTGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCAGGCACTGGAGTTTACCGAATCCTGCACC                         >  SRR4302533.1408319/1‑94 (MQ=60)

                                                                       TGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGG                       >  SRR4302533.1084544/1‑94 (MQ=60)

                                                                       TGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGG                       <  SRR4302533.840966/94‑1 (MQ=60)

                                                                       TGGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATAGTGCACCGG                       >  SRR4302533.2956120/1‑94 (MQ=60)

                                                                        GGCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGT                      <  SRR4302533.5359022/94‑1 (MQ=60)

                                                                         GCTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTA                     >  SRR4302533.2926407/1‑94 (MQ=60)

                                                                          CTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTAC                    >  SRR4302533.4947630/1‑94 (MQ=60)

                                                                          CTTGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTAC                    >  SRR4302533.2008103/1‑94 (MQ=60)

                                                                            TGTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACAC                  <  SRR4302533.2829956/94‑1 (MQ=60)

                                                                             GTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACT                 >  SRR4302533.3251860/1‑94 (MQ=60)

                                                                             GTCGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACT                 <  SRR4302533.4869513/94‑1 (MQ=60)

                                                                               CGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGG               <  SRR4302533.4873904/94‑1 (MQ=60)

                                                                               CGACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGG               >  SRR4302533.3473004/1‑94 (MQ=60)

                                                                                GACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGT              >  SRR4302533.1743275/1‑94 (MQ=60)

                                                                                GACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGT              >  SRR4302533.4814652/1‑94 (MQ=60)

                                                                                GACCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGT              >  SRR4302533.2226841/1‑94 (MQ=60)

                                                                                  CCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTG            >  SRR4302533.3357369/1‑94 (MQ=60)

                                                                                  CCTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTG            <  SRR4302533.5047430/94‑1 (MQ=60)

                                                                                   CTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGG           >  SRR4302533.391104/1‑94 (MQ=60)

                                                                                   CTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGG           >  SRR4302533.1650882/1‑94 (MQ=60)

                                                                                   CTGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGG           <  SRR4302533.1269764/94‑1 (MQ=60)

                                                                                    TGATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGA          >  SRR4302533.3589585/1‑94 (MQ=60)

                                                                                     GATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCAGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGAT         <  SRR4302533.4472766/94‑1 (MQ=60)

                                                                                      ATGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATG        <  SRR4302533.3041097/94‑1 (MQ=60)

                                                                                       TGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGG       >  SRR4302533.1993959/1‑94 (MQ=60)

                                                                                       TGAGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGG       <  SRR4302533.4924544/94‑1 (MQ=60)

                                                                                         AGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCA     >  SRR4302533.5934030/1‑94 (MQ=60)

                                                                                         AGGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCA     <  SRR4302533.3013702/94‑1 (MQ=60)

                                                                                          GGGGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCAT    <  SRR4302533.5250878/94‑1 (MQ=60)

                                                                                            GGCCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCG  <  SRR4302533.1067619/94‑1 (MQ=60)

GGCATTTGGTGCCATTGAAGAATCACTCTTATGGTCAGCAGAACAACGGGCGGCTTCGCTGGCGGCGACGCTGGCTTGTCGACCTGATGAGGGACCGGTGTGGATCTTCGGCTATGGATCGTTGATGTGGAATCCGGCACTGGAGTTTACCGAATCGTGCACCGGTACACTGGTTGGATGGCATCG  >  NC_000913/1271771‑1271956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`