Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  >  NC_000913/1401404‑1401590
                                                                                             |                                                                                             
ACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAAT                                                                                               <  SRR4302540.3918202/94‑1 (MQ=60)
  ACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGG                                                                                             <  SRR4302540.4283151/94‑1 (MQ=60)
   CCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGC                                                                                            <  SRR4302540.4136682/94‑1 (MQ=60)
    CACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATTTGGCATCTTCGGAACCCGCAGGCGCTTCAACAAGTTAAACGGCC                                                                                           >  SRR4302540.1494097/1‑94 (MQ=60)
     ACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCT                                                                                          <  SRR4302540.7063015/94‑1 (MQ=60)
     ACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCT                                                                                          <  SRR4302540.8085556/94‑1 (MQ=60)
      CGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTG                                                                                         >  SRR4302540.504750/1‑94 (MQ=60)
      CGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTG                                                                                         >  SRR4302540.3335237/1‑94 (MQ=60)
       GTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGA                                                                                        >  SRR4302540.438755/1‑94 (MQ=60)
        TAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGAT                                                                                       <  SRR4302540.9426756/94‑1 (MQ=60)
        TAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGAT                                                                                       <  SRR4302540.5238018/94‑1 (MQ=60)
           GAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGA                                                                                    <  SRR4302540.1123905/94‑1 (MQ=60)
            AGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGAC                                                                                   >  SRR4302540.5182479/1‑94 (MQ=60)
             GGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACC                                                                                  >  SRR4302540.6142972/1‑94 (MQ=60)
               CTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCC                                                                                >  SRR4302540.6619480/1‑94 (MQ=60)
               CTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCAC                                                                                >  SRR4302540.4945055/1‑94 (MQ=60)
               CTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCC                                                                                >  SRR4302540.7270145/1‑94 (MQ=60)
                TTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCC                                                                               <  SRR4302540.9671362/94‑1 (MQ=60)
                TTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCC                                                                               <  SRR4302540.7221799/94‑1 (MQ=60)
                TTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTGCAACGGCCTGATTGACCACC                                                                               >  SRR4302540.6625804/1‑94 (MQ=60)
                  GCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGC                                                                             >  SRR4302540.4502615/1‑94 (MQ=60)
                  GCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGCACCCCGC                                                                             >  SRR4302540.1729243/1‑94 (MQ=60)
                   CCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCG                                                                            >  SRR4302540.6017568/1‑94 (MQ=60)
                    CCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGA                                                                           >  SRR4302540.6489631/1‑94 (MQ=60)
                      TTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACC                                                                         >  SRR4302540.6211386/1‑94 (MQ=60)
                      TTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACC                                                                         >  SRR4302540.4384483/1‑94 (MQ=60)
                      TTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCCACC                                                                         >  SRR4302540.6211387/1‑94 (MQ=60)
                       TGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGGCCCCCGCGACCT                                                                        <  SRR4302540.494887/94‑1 (MQ=60)
                       TGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCT                                                                        >  SRR4302540.6818736/1‑94 (MQ=60)
                       TGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCT                                                                        >  SRR4302540.8449470/1‑94 (MQ=60)
                          TGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAG                                                                     <  SRR4302540.2539330/94‑1 (MQ=60)
                            TTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCC                                                                   >  SRR4302540.8517132/1‑94 (MQ=60)
                            TTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCC                                                                   <  SRR4302540.6357965/94‑1 (MQ=60)
                             TGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCCGGCGCCTCGACACGTTCAATGGCCTGATTGACGCCCGCGACGTGAGCCG                                                                  >  SRR4302540.2151289/1‑94 (MQ=60)
                                 GCACGCGGGCCATCATTAATGTGGCATCTTCGGAGCCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTG                                                              <  SRR4302540.4567914/94‑1 (MQ=60)
                                   ACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGAC                                                            >  SRR4302540.3942299/1‑94 (MQ=60)
                                    CGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGCTTGACCCCCGCGACCTGAGCCGCCTGACT                                                           >  SRR4302540.8283106/1‑94 (MQ=60)
                                    CGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACT                                                           >  SRR4302540.8282836/1‑94 (MQ=60)
                                      GGGGCCATGATTAATGGTGCATCTTCCGAACCCGTAGGCGATTAAACACGCTGAATGGCCTGATTGACCCCCGCCACCTGAGCCGCCTGACTTT                                                         <  SRR4302540.6474613/94‑1 (MQ=40)
                                       GGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTG                                                        <  SRR4302540.2744462/94‑1 (MQ=60)
                                        GGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGC                                                       <  SRR4302540.3687229/94‑1 (MQ=60)
                                        GGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGC                                                       >  SRR4302540.87841/1‑94 (MQ=60)
                                        GGCCATCATTAATGTGGCAGCTTCGGACCCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGC                                                       <  SRR4302540.1095450/94‑1 (MQ=60)
                                          CCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCCGACTTTGCAA                                                     >  SRR4302540.7761405/1‑94 (MQ=60)
                                           CATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAAC                                                    <  SRR4302540.2707983/94‑1 (MQ=60)
                                            ATCATTAATGTGGCATCTTCGGAACCCGCAGGCTCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGTGTCGCCTGACTTTGCAACC                                                   >  SRR4302540.9081040/1‑94 (MQ=60)
                                            ATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACC                                                   >  SRR4302540.7090215/1‑94 (MQ=60)
                                             TCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCA                                                  >  SRR4302540.4299326/1‑94 (MQ=60)
                                              TATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCAT                                                 <  SRR4302540.4216610/94‑1 (MQ=60)
                                              CATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCAT                                                 <  SRR4302540.3113773/94‑1 (MQ=60)
                                              CATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCAT                                                 <  SRR4302540.3897105/94‑1 (MQ=60)
                                              CATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCAT                                                 <  SRR4302540.6182142/94‑1 (MQ=60)
                                               ATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATG                                                >  SRR4302540.891345/1‑94 (MQ=60)
                                                TTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGC                                               >  SRR4302540.7476857/1‑94 (MQ=60)
                                                 TAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCG                                              >  SRR4302540.7600164/1‑94 (MQ=60)
                                                  AATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGA                                             >  SRR4302540.8465141/1‑94 (MQ=60)
                                                  AATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGA                                             <  SRR4302540.931783/94‑1 (MQ=60)
                                                   ATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGGCCTGAGCCGCCTGACTTTGCAACCATGCGAC                                            <  SRR4302540.6216510/94‑1 (MQ=60)
                                                    TGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACC                                           <  SRR4302540.9832925/94‑1 (MQ=60)
                                                     GTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCC                                          <  SRR4302540.7719507/94‑1 (MQ=60)
                                                     GTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCC                                          <  SRR4302540.7719506/94‑1 (MQ=60)
                                                        GCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATT                                       >  SRR4302540.2420071/1‑94 (MQ=60)
                                                        GCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATT                                       >  SRR4302540.2203799/1‑94 (MQ=60)
                                                         gatgTTCGGAACCCGCAGGCGGTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTG                                      <  SRR4302540.1522519/90‑1 (MQ=60)
                                                          ATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGC                                     <  SRR4302540.4610216/94‑1 (MQ=60)
                                                          ATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGC                                     >  SRR4302540.9198793/1‑94 (MQ=60)
                                                          ATCTTCGGAACCCGCAGGAGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGC                                     >  SRR4302540.4237580/1‑94 (MQ=60)
                                                            CTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGG                                   >  SRR4302540.8331193/1‑94 (MQ=60)
                                                            CGTCGGAACCCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGG                                   <  SRR4302540.1612988/94‑1 (MQ=60)
                                                                GGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAA                               >  SRR4302540.5703937/1‑94 (MQ=60)
                                                                GGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAA                               >  SRR4302540.5703936/1‑94 (MQ=60)
                                                                  AACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGG                             <  SRR4302540.2049680/94‑1 (MQ=60)
                                                                  AACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGG                             <  SRR4302540.2712199/94‑1 (MQ=60)
                                                                    CCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAG                           >  SRR4302540.7747360/1‑94 (MQ=60)
                                                                     CCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGA                          <  SRR4302540.6053217/94‑1 (MQ=60)
                                                                     CCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGA                          >  SRR4302540.3319696/1‑94 (MQ=60)
                                                                     CCGCAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGA                          <  SRR4302540.9221721/94‑1 (MQ=60)
                                                                      CGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAA                         >  SRR4302540.9939161/1‑94 (MQ=60)
                                                                      CGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAA                         <  SRR4302540.3719661/94‑1 (MQ=60)
                                                                       GCAGGCGCTTCAAAACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAAC                        <  SRR4302540.1192684/94‑1 (MQ=60)
                                                                        CAGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACT                       <  SRR4302540.7462253/94‑1 (MQ=60)
                                                                         AGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTG                      >  SRR4302540.719980/1‑94 (MQ=60)
                                                                         AGGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTG                      <  SRR4302540.391614/94‑1 (MQ=60)
                                                                          GGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGG                     <  SRR4302540.6514368/94‑1 (MQ=60)
                                                                          GGCGCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGG                     >  SRR4302540.4953876/1‑94 (MQ=60)
                                                                           GCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGC                    >  SRR4302540.6646702/1‑94 (MQ=60)
                                                                             GCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGG                  >  SRR4302540.7519187/1‑94 (MQ=60)
                                                                             GCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGG                  <  SRR4302540.8264629/94‑1 (MQ=60)
                                                                             GCTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGG                  >  SRR4302540.3471358/1‑94 (MQ=60)
                                                                              CTTCAACACGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGT                 <  SRR4302540.3842020/94‑1 (MQ=60)
                                                                               TTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTA                >  SRR4302540.6588419/1‑94 (MQ=60)
                                                                               TTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTA                >  SRR4302540.9137383/1‑94 (MQ=60)
                                                                               TTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTA                >  SRR4302540.4644243/1‑94 (MQ=60)
                                                                                   ACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTG            >  SRR4302540.6577890/1‑94 (MQ=60)
                                                                                   ACACGTTCAACGGCCTGATTTTCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTG            <  SRR4302540.8318213/94‑1 (MQ=60)
                                                                                      CGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCAC         >  SRR4302540.3561559/1‑94 (MQ=60)
                                                                                      CGTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTCCGGCGAAGCAAAACTGGCGGcacctgccc         >  SRR4302540.3561290/1‑85 (MQ=60)
                                                                                       GTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACC        >  SRR4302540.7276780/1‑94 (MQ=60)
                                                                                       GTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACC        >  SRR4302540.4241175/1‑94 (MQ=60)
                                                                                       GTTCAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACC        >  SRR4302540.7078989/1‑94 (MQ=60)
                                                                                          CAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCAT     <  SRR4302540.6192543/94‑1 (MQ=60)
                                                                                          CAACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCAT     >  SRR4302540.179229/1‑94 (MQ=60)
                                                                                            ACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCA   <  SRR4302540.488658/94‑1 (MQ=60)
                                                                                            ACGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCA   <  SRR4302540.2799650/94‑1 (MQ=60)
                                                                                             TGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  <  SRR4302540.8325744/94‑1 (MQ=60)
                                                                                             TGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  <  SRR4302540.611985/94‑1 (MQ=60)
                                                                                             CGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  >  SRR4302540.5383194/1‑94 (MQ=60)
                                                                                             CGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  <  SRR4302540.1186175/94‑1 (MQ=60)
                                                                                             |                                                                                             
ACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAG  >  NC_000913/1401404‑1401590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑