Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGTT  >  NC_000913/1512699‑1512883
                                                                                           |                                                                                             
ATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACT                                                                                             <  SRR4302540.10090593/94‑1 (MQ=60)
  ATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCT                                                                                           <  SRR4302540.1410995/94‑1 (MQ=60)
  ATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCT                                                                                           >  SRR4302540.9207218/1‑94 (MQ=60)
  ATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCT                                                                                           <  SRR4302540.108210/94‑1 (MQ=60)
     CCGATGGCGGCGTCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAA                                                                                        <  SRR4302540.4771247/94‑1 (MQ=60)
     CCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAA                                                                                        >  SRR4302540.1540856/1‑94 (MQ=60)
      CGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAAC                                                                                       <  SRR4302540.861735/94‑1 (MQ=60)
      CGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAAC                                                                                       >  SRR4302540.9106792/1‑94 (MQ=60)
       GATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACG                                                                                      <  SRR4302540.373185/94‑1 (MQ=60)
         TGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCG                                                                                    <  SRR4302540.2681195/94‑1 (MQ=60)
         TGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCG                                                                                    >  SRR4302540.7301010/1‑94 (MQ=60)
          GGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGC                                                                                   >  SRR4302540.2749750/1‑94 (MQ=60)
          GGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGC                                                                                   >  SRR4302540.4456764/1‑94 (MQ=60)
             GGCGGCATTCACCCTGTTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACC                                                                                <  SRR4302540.9651581/94‑1 (MQ=60)
             GGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACC                                                                                <  SRR4302540.7040608/94‑1 (MQ=60)
             GGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACC                                                                                <  SRR4302540.9697502/94‑1 (MQ=60)
             GGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACC                                                                                <  SRR4302540.2084060/94‑1 (MQ=60)
               GGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGT                                                                              <  SRR4302540.1952120/94‑1 (MQ=60)
               CGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGT                                                                              >  SRR4302540.8724241/1‑94 (MQ=60)
                GGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTT                                                                             >  SRR4302540.3275217/1‑94 (MQ=60)
                GGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTT                                                                             <  SRR4302540.7757497/94‑1 (MQ=60)
                   ATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTT                                                                          >  SRR4302540.7430886/1‑94 (MQ=60)
                   ATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTT                                                                          >  SRR4302540.7149204/1‑94 (MQ=60)
                   ATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTT                                                                          >  SRR4302540.3050415/1‑94 (MQ=60)
                   ATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTT                                                                          >  SRR4302540.64232/1‑94 (MQ=60)
                    TTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTC                                                                         >  SRR4302540.103404/1‑94 (MQ=60)
                    TTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTC                                                                         <  SRR4302540.5150949/94‑1 (MQ=60)
                    TTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTC                                                                         <  SRR4302540.6880048/94‑1 (MQ=60)
                      CACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCT                                                                       >  SRR4302540.3715374/1‑94 (MQ=60)
                       CCCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTC                                                                      <  SRR4302540.2405249/94‑1 (MQ=60)
                        CCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCA                                                                     >  SRR4302540.6055584/1‑94 (MQ=60)
                        CCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCA                                                                     <  SRR4302540.884099/94‑1 (MQ=60)
                         CCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAA                                                                    >  SRR4302540.1431304/1‑94 (MQ=60)
                         CCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAA                                                                    >  SRR4302540.9552288/1‑94 (MQ=60)
                         CCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAA                                                                    >  SRR4302540.1612463/1‑94 (MQ=60)
                         CCTGGTGCCGATTATTCCCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGTAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAA                                                                    <  SRR4302540.5964127/94‑1 (MQ=60)
                          CTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAA                                                                   >  SRR4302540.4354681/1‑94 (MQ=60)
                             GTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTG                                                                <  SRR4302540.5568771/94‑1 (MQ=60)
                             GTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTG                                                                >  SRR4302540.6903336/1‑94 (MQ=60)
                             GTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTG                                                                <  SRR4302540.5568770/94‑1 (MQ=60)
                              TGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGG                                                               >  SRR4302540.5959019/1‑94 (MQ=60)
                                 CGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGG                                                            >  SRR4302540.8181591/1‑94 (MQ=60)
                                  GATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGC                                                           >  SRR4302540.5634085/1‑94 (MQ=60)
                                  GATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGC                                                           >  SRR4302540.7456038/1‑94 (MQ=60)
                                  GATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGC                                                           >  SRR4302540.4153590/1‑94 (MQ=60)
                                  GATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGC                                                           >  SRR4302540.4153591/1‑94 (MQ=60)
                                    TTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCT                                                         >  SRR4302540.5846029/1‑94 (MQ=60)
                                     TATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTG                                                        >  SRR4302540.5876272/1‑94 (MQ=60)
                                      ATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGG                                                       <  SRR4302540.9504189/94‑1 (MQ=60)
                                        TCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGG                                                     <  SRR4302540.1433028/94‑1 (MQ=60)
                                           CATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGG                                                  <  SRR4302540.2108854/94‑1 (MQ=60)
                                           CATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGG                                                  >  SRR4302540.2181292/1‑94 (MQ=60)
                                              CGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGT                                               <  SRR4302540.5299559/94‑1 (MQ=60)
                                              CGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTATGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGT                                               <  SRR4302540.5299560/94‑1 (MQ=60)
                                               GCACTGTGCCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTT                                              <  SRR4302540.1738467/94‑1 (MQ=60)
                                               GCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTT                                              <  SRR4302540.1738466/94‑1 (MQ=60)
                                               GCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTT                                              <  SRR4302540.5224787/94‑1 (MQ=60)
                                               GCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTT                                              <  SRR4302540.9333887/94‑1 (MQ=60)
                                                CACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTG                                             >  SRR4302540.4585645/1‑94 (MQ=60)
                                                 ACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGT                                            >  SRR4302540.348393/1‑94 (MQ=60)
                                                 ACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGT                                            >  SRR4302540.813232/1‑94 (MQ=60)
                                                 ACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGT                                            >  SRR4302540.8214281/1‑94 (MQ=60)
                                                   TGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTT                                          <  SRR4302540.8559032/94‑1 (MQ=60)
                                                   TGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGGGGCGTTGTTT                                          >  SRR4302540.1737060/1‑94 (MQ=60)
                                                    GTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTT                                         >  SRR4302540.5848591/1‑94 (MQ=60)
                                                     TACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTC                                        >  SRR4302540.3532472/1‑94 (MQ=60)
                                                      ACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCC                                       <  SRR4302540.5073652/94‑1 (MQ=60)
                                                       CCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCT                                      >  SRR4302540.1488419/1‑94 (MQ=60)
                                                       CCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCT                                      <  SRR4302540.8781017/94‑1 (MQ=60)
                                                       CCTGGCGTTCGTGAAACGGCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAGCTGGCGTCCGGGGGCGGCGTTGTTTTCCT                                      <  SRR4302540.8781018/94‑1 (MQ=60)
                                                         TGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTAC                                    >  SRR4302540.8087811/1‑94 (MQ=60)
                                                         TGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTAC                                    <  SRR4302540.2116846/94‑1 (MQ=60)
                                                         TGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTAC                                    <  SRR4302540.1572608/94‑1 (MQ=60)
                                                            CGTTCGTGAGCCGTCTGGGAGCGTTCGATGCTCTCTGAACGCGCACCGTTTTTCCTCAGACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACCTT                                 <  SRR4302540.7801577/94‑1 (MQ=60)
                                                             GTTCGTGAAACGTCTGGGAGCGTTTGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTCTTTTCCTACATTT                                >  SRR4302540.849843/1‑94 (MQ=60)
                                                             GTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTT                                <  SRR4302540.9682271/94‑1 (MQ=60)
                                                             GTTCGTGAAACGGCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTT                                <  SRR4302540.7671287/94‑1 (MQ=60)
                                                              TTCGTGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTT                               <  SRR4302540.7789442/94‑1 (MQ=60)
                                                                CGTGAAACGTCTGGGAGCGTTCTATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCC                             >  SRR4302540.1840030/1‑94 (MQ=60)
                                                                  TGAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCA                           <  SRR4302540.9438147/94‑1 (MQ=60)
                                                                  TGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCA                           >  SRR4302540.2604515/1‑94 (MQ=60)
                                                                   GAAACGTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCAT                          <  SRR4302540.6234474/94‑1 (MQ=60)
                                                                      ACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCT                       <  SRR4302540.3036836/94‑1 (MQ=60)
                                                                        GTCTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGA                     >  SRR4302540.2089726/1‑94 (MQ=60)
                                                                          CTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATA                   >  SRR4302540.6716778/1‑94 (MQ=60)
                                                                          CTGGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATA                   <  SRR4302540.1960012/94‑1 (MQ=60)
                                                                            GGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAAT                 >  SRR4302540.1361540/1‑94 (MQ=60)
                                                                            GGGAGCGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAAT                 >  SRR4302540.8613876/1‑94 (MQ=60)
                                                                            GGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAAT                 <  SRR4302540.8985819/94‑1 (MQ=60)
                                                                            GGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAAT                 <  SRR4302540.6842208/94‑1 (MQ=60)
                                                                             GGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATC                <  SRR4302540.356907/94‑1 (MQ=60)
                                                                                 CGTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCG            <  SRR4302540.1281802/94‑1 (MQ=60)
                                                                                 CGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCG            >  SRR4302540.1208196/1‑94 (MQ=60)
                                                                                  GTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCcgcgc           >  SRR4302540.1353024/1‑89 (MQ=60)
                                                                                  GTTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGC           >  SRR4302540.9837697/1‑94 (MQ=60)
                                                                                  GTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGC           >  SRR4302540.1289623/1‑94 (MQ=60)
                                                                                  GTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGC           >  SRR4302540.1177476/1‑94 (MQ=60)
                                                                                   TTCGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCC          >  SRR4302540.535993/1‑94 (MQ=60)
                                                                                   TTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCC          <  SRR4302540.8320506/94‑1 (MQ=60)
                                                                                    TCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCT         <  SRR4302540.8641386/94‑1 (MQ=60)
                                                                                     TGATGCACTCTGAACGCGCACCGTTTTTCCTCAAGCTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTA        <  SRR4302540.1036312/94‑1 (MQ=60)
                                                                                     CGATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTA        >  SRR4302540.9512948/1‑94 (MQ=60)
                                                                                     CGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCGTCCTGATAATCGCCGCCTA        >  SRR4302540.9892812/1‑94 (MQ=60)
                                                                                     CGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGCTAATCGCCGCCTA        >  SRR4302540.2060609/1‑94 (MQ=60)
                                                                                      GATGCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTGCCATCCTGATAATCGCCGCCTAT       <  SRR4302540.621944/94‑1 (MQ=60)
                                                                                      GATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTAT       <  SRR4302540.2293840/94‑1 (MQ=60)
                                                                                      GATGCACTCTGAACGAGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTAT       <  SRR4302540.7634495/94‑1 (MQ=60)
                                                                                         GCGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCG    <  SRR4302540.6707128/94‑1 (MQ=60)
                                                                                         GCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCG    <  SRR4302540.4667707/94‑1 (MQ=60)
                                                                                          CGCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGT   >  SRR4302540.1755459/1‑94 (MQ=60)
                                                                                           CCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGTT  <  SRR4302540.8876038/94‑1 (MQ=60)
                                                                                           CCTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGTT  <  SRR4302540.1576138/94‑1 (MQ=60)
                                                                                           ACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGTT  >  SRR4302540.6750360/1‑94 (MQ=60)
                                                                                           |                                                                                             
ATATGCCGATGGCGGCGGCATTCACCCTGGTGCCGATTATTCTCATCGCACTGTACCTGGCGTTCGTGAAACGTCTGGGAGCGTTCGATGCACTCTGAACGCGCACCGTTTTTCCTCAAACTGGCGGCCTGGGGCGGCGTTGTTTTCCTACATTTTCCCATCCTGATAATCGCCGCCTATGCGTT  >  NC_000913/1512699‑1512883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑