Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCAATAA  >  NC_000913/1531741‑1531926
                                                                                             |                                                                                            
CACCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGA                                                                                              >  SRR4302540.1318495/1‑94 (MQ=60)
 CCCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGC                                                                                             <  SRR4302540.2618763/94‑1 (MQ=60)
 ACCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGC                                                                                             >  SRR4302540.3797594/1‑94 (MQ=60)
  CCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACG                                                                                            <  SRR4302540.120465/94‑1 (MQ=60)
   cgagATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGG                                                                                           <  SRR4302540.3491039/90‑1 (MQ=60)
   CGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGGTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGG                                                                                           <  SRR4302540.3270076/94‑1 (MQ=60)
    GGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGC                                                                                          <  SRR4302540.675926/94‑1 (MQ=60)
       ATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGG                                                                                       >  SRR4302540.5804117/1‑94 (MQ=60)
         TGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCA                                                                                     >  SRR4302540.7923316/1‑94 (MQ=60)
         TGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCA                                                                                     >  SRR4302540.7923317/1‑94 (MQ=60)
           ACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATG                                                                                   <  SRR4302540.5762054/94‑1 (MQ=60)
            CCAGCCTGCAGCCATAATGTTACGCCGCTGGTATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGG                                                                                  <  SRR4302540.4033114/94‑1 (MQ=60)
             CAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGT                                                                                 >  SRR4302540.8945682/1‑94 (MQ=60)
               GGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGT                                                                               >  SRR4302540.1398833/1‑94 (MQ=60)
               GGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGT                                                                               >  SRR4302540.6381496/1‑94 (MQ=60)
                GCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTA                                                                              <  SRR4302540.8582212/94‑1 (MQ=60)
                 CTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAA                                                                             >  SRR4302540.6998444/1‑94 (MQ=60)
                  TGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAAT                                                                            <  SRR4302540.9544446/94‑1 (MQ=60)
                    CAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTC                                                                          >  SRR4302540.7227360/1‑94 (MQ=60)
                     AGCCATAATGTTACGCCGCTGTGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCT                                                                         <  SRR4302540.9402112/94‑1 (MQ=60)
                     AGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGTCTGGCATGGTGTAATTCT                                                                         >  SRR4302540.8311182/1‑94 (MQ=60)
                      GCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTA                                                                        >  SRR4302540.10120999/1‑94 (MQ=60)
                      GCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTT                                                                        >  SRR4302540.2248005/1‑94 (MQ=60)
                       CCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCCAGACCGTTGGGCCATGATTTAACAGGCGGCTGGACGGGTGTAATTCTAT                                                                       >  SRR4302540.2501720/1‑94 (MQ=60)
                       CCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTAT                                                                       <  SRR4302540.936168/94‑1 (MQ=60)
                        CATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATG                                                                      <  SRR4302540.1455869/94‑1 (MQ=60)
                        CATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATG                                                                      >  SRR4302540.4786516/1‑94 (MQ=60)
                         ATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGG                                                                     >  SRR4302540.7102857/1‑94 (MQ=60)
                          TAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGGGTAATTCTATGGG                                                                    >  SRR4302540.2135908/1‑94 (MQ=60)
                           AATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGG                                                                   <  SRR4302540.3129259/94‑1 (MQ=60)
                            ATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGA                                                                  >  SRR4302540.9226614/1‑94 (MQ=60)
                            ATGTTACGCCACTGGGATTGCTCATAGACACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTAGGGGGA                                                                  >  SRR4302540.9226613/1‑94 (MQ=60)
                               TTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGA                                                               >  SRR4302540.6988454/1‑94 (MQ=60)
                                  CGCCGCTGGGATTGCTCATCTAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATC                                                            <  SRR4302540.1310745/94‑1 (MQ=60)
                                  CGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATC                                                            <  SRR4302540.7284184/94‑1 (MQ=60)
                                  CGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATC                                                            <  SRR4302540.5683126/94‑1 (MQ=60)
                                  CGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATC                                                            >  SRR4302540.3404538/1‑94 (MQ=60)
                                   GCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTACTTCTATGGGGATGAATAG                                                           >  SRR4302540.2101068/1‑94 (MQ=60)
                                    CCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGG                                                          >  SRR4302540.8344580/1‑94 (MQ=60)
                                    CCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGG                                                          <  SRR4302540.3382461/94‑1 (MQ=60)
                                    CCGCTGCGATCGCGCATCGAAACTGGTGATCAAGATCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGG                                                          <  SRR4302540.3382462/94‑1 (MQ=60)
                                     CGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGC                                                         >  SRR4302540.5895850/1‑94 (MQ=60)
                                     CGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGC                                                         >  SRR4302540.9433455/1‑94 (MQ=60)
                                     CGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGC                                                         >  SRR4302540.4581215/1‑94 (MQ=60)
                                      GCGGGGAGTGCTCATAGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCT                                                        <  SRR4302540.7311398/94‑1 (MQ=60)
                                      CCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCT                                                        <  SRR4302540.7311400/94‑1 (MQ=60)
                                        TGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCA                                                      >  SRR4302540.4175781/1‑94 (MQ=60)
                                         GGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCAT                                                     >  SRR4302540.5038081/1‑94 (MQ=60)
                                         GGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCAT                                                     >  SRR4302540.9711485/1‑94 (MQ=60)
                                            ATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGT                                                  <  SRR4302540.1526141/94‑1 (MQ=60)
                                            ATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGT                                                  <  SRR4302540.1526394/94‑1 (MQ=60)
                                             TTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTA                                                 <  SRR4302540.4172412/94‑1 (MQ=60)
                                             TTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTA                                                 >  SRR4302540.1569103/1‑94 (MQ=60)
                                               GCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATC                                               >  SRR4302540.9584941/1‑94 (MQ=60)
                                               GCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATC                                               <  SRR4302540.2652646/94‑1 (MQ=60)
                                               GCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATC                                               <  SRR4302540.5189806/94‑1 (MQ=60)
                                                CTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCG                                              >  SRR4302540.4988125/1‑94 (MQ=60)
                                                CTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCG                                              >  SRR4302540.6872770/1‑94 (MQ=60)
                                                 TCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGC                                             >  SRR4302540.6679221/1‑94 (MQ=60)
                                                 TCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGC                                             >  SRR4302540.3609465/1‑94 (MQ=60)
                                                  CATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCC                                            >  SRR4302540.7655128/1‑94 (MQ=60)
                                                  CATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGGATCGCC                                            >  SRR4302540.7655129/1‑94 (MQ=60)
                                                  CATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCC                                            <  SRR4302540.2322848/94‑1 (MQ=60)
                                                  CATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCC                                            >  SRR4302540.3104873/1‑94 (MQ=60)
                                                   ATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCT                                           >  SRR4302540.7573708/1‑94 (MQ=60)
                                                    TCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTC                                          <  SRR4302540.862677/94‑1 (MQ=60)
                                                    TCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTC                                          <  SRR4302540.1040040/94‑1 (MQ=60)
                                                       AAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCG                                       >  SRR4302540.4326251/1‑94 (MQ=60)
                                                        AACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGA                                      <  SRR4302540.712435/94‑1 (MQ=60)
                                                        AACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGA                                      <  SRR4302540.8324146/94‑1 (MQ=60)
                                                        AACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGA                                      <  SRR4302540.4031903/94‑1 (MQ=60)
                                                          CTGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAG                                    >  SRR4302540.4764131/1‑94 (MQ=60)
                                                          CTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAG                                    >  SRR4302540.3033566/1‑94 (MQ=60)
                                                           TGGTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGA                                   <  SRR4302540.8916880/94‑1 (MQ=60)
                                                           TGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGA                                   >  SRR4302540.189172/1‑94 (MQ=60)
                                                           TGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGA                                   >  SRR4302540.5294393/1‑94 (MQ=60)
                                                             GTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAG                                 <  SRR4302540.5381230/94‑1 (MQ=60)
                                                             GTGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAG                                 <  SRR4302540.9286467/94‑1 (MQ=60)
                                                             GTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAG                                 <  SRR4302540.9449835/94‑1 (MQ=60)
                                                              TGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGG                                >  SRR4302540.9549395/1‑94 (MQ=60)
                                                              TGATCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGG                                <  SRR4302540.9000060/94‑1 (MQ=60)
                                                              TGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGG                                >  SRR4302540.4493233/1‑94 (MQ=60)
                                                              TGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGG                                >  SRR4302540.4493232/1‑94 (MQ=60)
                                                               GATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGT                               <  SRR4302540.8816349/94‑1 (MQ=60)
                                                                ATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTT                              >  SRR4302540.1711363/1‑94 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             >  SRR4302540.5312910/1‑94 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             <  SRR4302540.8311349/94‑1 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             >  SRR4302540.9102911/1‑94 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGAGTAATTCTATGGGGATGAACCGGATCATGGTATgcactgcccaaaaaggttt                             >  SRR4302540.9102910/1‑75 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             <  SRR4302540.2144926/94‑1 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             >  SRR4302540.4487859/1‑94 (MQ=60)
                                                                 TCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTT                             >  SRR4302540.5702054/1‑94 (MQ=60)
                                                                  CAAGACCGTTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTT                            >  SRR4302540.2881515/1‑94 (MQ=60)
                                                                  CAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTT                            <  SRR4302540.847324/94‑1 (MQ=60)
                                                                   AAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTT                           >  SRR4302540.9315989/1‑94 (MQ=60)
                                                                    acactcTTGGGCCATGATCTAAGAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTT                          <  SRR4302540.6087758/88‑1 (MQ=60)
                                                                    AGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTT                          <  SRR4302540.6087757/94‑1 (MQ=60)
                                                                       CCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAA                       >  SRR4302540.8363976/1‑94 (MQ=60)
                                                                         GTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGGTGAATCGGCTCATGGCATCGCCTCGCGAAGAAGGTTTTTTTAAGC                     >  SRR4302540.6879063/1‑94 (MQ=60)
                                                                         GTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGC                     >  SRR4302540.1738794/1‑94 (MQ=60)
                                                                         GTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGC                     <  SRR4302540.5422464/94‑1 (MQ=60)
                                                                          TTGGGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCG                    >  SRR4302540.4805429/1‑94 (MQ=60)
                                                                             GGGCATGGTTTAACAGGCGGCTGGCATGGTGTAATTCTAGGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAG                 <  SRR4302540.37523/94‑1 (MQ=60)
                                                                             GGCCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAG                 >  SRR4302540.8649013/1‑94 (MQ=60)
                                                                             GGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAG                 <  SRR4302540.9405155/94‑1 (MQ=60)
                                                                               CCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               <  SRR4302540.3947510/94‑1 (MQ=60)
                                                                               CCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               <  SRR4302540.9461926/94‑1 (MQ=60)
                                                                               CCATGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               >  SRR4302540.9534329/1‑94 (MQ=60)
                                                                               CCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               <  SRR4302540.1613527/94‑1 (MQ=60)
                                                                               CCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               <  SRR4302540.7100163/94‑1 (MQ=60)
                                                                               CCATGATTTAACAGACGGCTAGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTC               <  SRR4302540.6038591/94‑1 (MQ=60)
                                                                                CATGATTGAACATTCGTCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGTTTTTTTTAAGCGTAGTCC              <  SRR4302540.1245083/94‑1 (MQ=60)
                                                                                 ATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCG             >  SRR4302540.1012559/1‑94 (MQ=60)
                                                                                  TGATTTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGT            <  SRR4302540.3114299/94‑1 (MQ=60)
                                                                                  TGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGT            <  SRR4302540.10081417/94‑1 (MQ=60)
                                                                                     TTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAAC         <  SRR4302540.1725846/94‑1 (MQ=60)
                                                                                      TTAACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACG        >  SRR4302540.5122092/1‑94 (MQ=60)
                                                                                      TTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACG        <  SRR4302540.1254659/94‑1 (MQ=60)
                                                                                        AACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCA      <  SRR4302540.9349880/94‑1 (MQ=60)
                                                                                        AACAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCA      <  SRR4302540.7266133/94‑1 (MQ=60)
                                                                                          CAGGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCAAT    <  SRR4302540.4374606/94‑1 (MQ=60)
                                                                                          CAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCAAT    <  SRR4302540.1999881/94‑1 (MQ=60)
                                                                                            GGCGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCAATAA  <  SRR4302540.6041635/94‑1 (MQ=60)
                                                                                             |                                                                                            
CACCGGCATTGACCAGGCTGCAGCCATAATGTTACGCCGCTGGGATTGCTCATCGAAACTGGTGATCAAGACCGTTGGGCCATGATTTAACAGACGGCTGGCATGGTGTAATTCTATGGGGATGAATCGGCTCATGGTATCGCCTCGCGAAGAAGGTTTTTTTAAGCGTAGTCCGTAACGCAATAA  >  NC_000913/1531741‑1531926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑