Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  NC_000913/1714342‑1714527
                                                                                             |                                                                                            
ACATACTGGGCGCGTGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGG                                                                                              <  SRR4302540.7850303/94‑1 (MQ=60)
 CATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGA                                                                                             <  SRR4302540.1181502/94‑1 (MQ=60)
 CATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAA                                                                                             <  SRR4302540.9546987/94‑1 (MQ=60)
 CATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAA                                                                                             >  SRR4302540.4271553/1‑94 (MQ=60)
 CATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAA                                                                                             <  SRR4302540.4358242/94‑1 (MQ=60)
  ATACTGGGCTCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAG                                                                                            >  SRR4302540.8119050/1‑94 (MQ=60)
   TACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGC                                                                                           <  SRR4302540.206929/94‑1 (MQ=60)
   TACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGC                                                                                           <  SRR4302540.10002352/94‑1 (MQ=60)
    ACTGGGCGCGCGGTTCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCG                                                                                          <  SRR4302540.2694075/94‑1 (MQ=60)
     CTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGG                                                                                         >  SRR4302540.2264662/1‑94 (MQ=60)
      TGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGT                                                                                        <  SRR4302540.7529013/94‑1 (MQ=60)
       GGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTA                                                                                       <  SRR4302540.2219785/94‑1 (MQ=60)
        GGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAA                                                                                      <  SRR4302540.10035616/94‑1 (MQ=60)
         GCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAA                                                                                     <  SRR4302540.5289313/94‑1 (MQ=60)
         GCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAA                                                                                     <  SRR4302540.8651703/94‑1 (MQ=60)
          CGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAAC                                                                                    <  SRR4302540.4687783/94‑1 (MQ=60)
          CGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAAC                                                                                    <  SRR4302540.5634491/94‑1 (MQ=60)
          CGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAAC                                                                                    <  SRR4302540.6960963/94‑1 (MQ=60)
          CGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAAC                                                                                    >  SRR4302540.5403332/1‑94 (MQ=60)
             ggggtgccttcacgcttTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTC                                                                                 <  SRR4302540.5197427/77‑1 (MQ=60)
              CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCG                                                                                >  SRR4302540.8175013/1‑94 (MQ=60)
              CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCG                                                                                <  SRR4302540.5733685/94‑1 (MQ=60)
              CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCG                                                                                <  SRR4302540.7980804/94‑1 (MQ=60)
               GGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTTGG                                                                               >  SRR4302540.4824085/1‑94 (MQ=60)
               GGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGG                                                                               >  SRR4302540.9146551/1‑94 (MQ=60)
                GTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGC                                                                              <  SRR4302540.1577870/94‑1 (MQ=60)
                GTGCTTGACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGC                                                                              <  SRR4302540.6450669/94‑1 (MQ=60)
                 TGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCA                                                                             <  SRR4302540.4080329/94‑1 (MQ=60)
                  GCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCAT                                                                            <  SRR4302540.2794015/94‑1 (MQ=60)
                  GCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCAT                                                                            >  SRR4302540.7620088/1‑94 (MQ=60)
                  GCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCAT                                                                            >  SRR4302540.5962643/1‑94 (MQ=60)
                   CTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATC                                                                           <  SRR4302540.8033512/94‑1 (MQ=60)
                    TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCC                                                                          <  SRR4302540.4484381/94‑1 (MQ=60)
                    TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCC                                                                          <  SRR4302540.3706161/94‑1 (MQ=60)
                    TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCC                                                                          >  SRR4302540.6316936/1‑94 (MQ=60)
                    TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCC                                                                          >  SRR4302540.1230655/1‑94 (MQ=60)
                     TTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCG                                                                         >  SRR4302540.4594948/1‑94 (MQ=60)
                        CCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAG                                                                      >  SRR4302540.6065355/1‑94 (MQ=60)
                        CCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAAGGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAG                                                                      <  SRR4302540.2894138/94‑1 (MQ=60)
                         CGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGT                                                                     >  SRR4302540.6120528/1‑94 (MQ=60)
                         CGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGT                                                                     >  SRR4302540.9210773/1‑94 (MQ=60)
                           CTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGT                                                                   >  SRR4302540.8124666/1‑94 (MQ=60)
                             GTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTG                                                                 >  SRR4302540.774287/1‑94 (MQ=60)
                             GTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTG                                                                 >  SRR4302540.3298919/1‑94 (MQ=60)
                             GTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTG                                                                 >  SRR4302540.3862898/1‑94 (MQ=60)
                               TTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGAT                                                               >  SRR4302540.1502149/1‑94 (MQ=60)
                               TTTTATCTTCTGCTTCCAGGGCGTTGATCTCTTCAATGCTAATAAAGGTGAACAACTTCAGGAAGCGATAAACGTCGGCATCCGCAGTGTTGAT                                                               <  SRR4302540.8386772/94‑1 (MQ=60)
                                TTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATC                                                              >  SRR4302540.5130238/1‑94 (MQ=60)
                                 TTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCC                                                             >  SRR4302540.6721741/1‑94 (MQ=60)
                                   ATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAG                                                           <  SRR4302540.3784212/94‑1 (MQ=60)
                                     CTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAA                                                         <  SRR4302540.6418258/94‑1 (MQ=60)
                                      TTCTTTTTCCAGGGCGTTGATTTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAAC                                                        <  SRR4302540.2681520/94‑1 (MQ=60)
                                      TTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGTAC                                                        >  SRR4302540.1503806/1‑94 (MQ=60)
                                      TTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAAC                                                        <  SRR4302540.3088957/94‑1 (MQ=60)
                                       TCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACT                                                       >  SRR4302540.6879077/1‑94 (MQ=60)
                                        CTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTG                                                      >  SRR4302540.8017172/1‑94 (MQ=60)
                                        CTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTG                                                      >  SRR4302540.8017173/1‑94 (MQ=60)
                                        CTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTG                                                      >  SRR4302540.6120443/1‑94 (MQ=60)
                                         TTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGG                                                     <  SRR4302540.5374914/94‑1 (MQ=60)
                                         TTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGG                                                     <  SRR4302540.3414748/94‑1 (MQ=60)
                                          TCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGT                                                    <  SRR4302540.2431688/94‑1 (MQ=60)
                                          TCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGT                                                    <  SRR4302540.1840013/94‑1 (MQ=60)
                                          TCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCTGCAGTGTTGATCCAGAACTGGT                                                    >  SRR4302540.8019024/1‑94 (MQ=60)
                                             TCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGA                                                 >  SRR4302540.1065505/1‑94 (MQ=60)
                                              CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAA                                                >  SRR4302540.4681617/1‑94 (MQ=60)
                                              CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAA                                                >  SRR4302540.9933075/1‑94 (MQ=60)
                                               CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               <  SRR4302540.7375482/94‑1 (MQ=60)
                                               CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               <  SRR4302540.3916027/94‑1 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              >  SRR4302540.8367987/1‑94 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              >  SRR4302540.4028857/1‑94 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              >  SRR4302540.9691703/1‑94 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              >  SRR4302540.4982903/1‑94 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              >  SRR4302540.9309214/1‑94 (MQ=60)
                                                AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATT                                              <  SRR4302540.9101369/94‑1 (MQ=60)
                                                 GGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTT                                             >  SRR4302540.8125622/1‑94 (MQ=60)
                                                   GCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGT                                           >  SRR4302540.7362966/1‑94 (MQ=60)
                                                     GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         <  SRR4302540.6590635/94‑1 (MQ=60)
                                                     GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         <  SRR4302540.5356913/94‑1 (MQ=60)
                                                      TTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACG                                        <  SRR4302540.1699119/94‑1 (MQ=60)
                                                      TTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACG                                        >  SRR4302540.405067/1‑94 (MQ=60)
                                                       TGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGG                                       >  SRR4302540.9812636/1‑94 (MQ=60)
                                                        GATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGG                                      >  SRR4302540.9705545/1‑94 (MQ=60)
                                                         ATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGC                                     >  SRR4302540.4494987/1‑94 (MQ=60)
                                                            TCTTCAATGGGAATAAAGGTGAAGAACTTCAGGGAGCGGGAAACGTCGGGATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGG                                  <  SRR4302540.6533041/94‑1 (MQ=60)
                                                            TCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGG                                  <  SRR4302540.6533040/94‑1 (MQ=60)
                                                              TTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTT                                >  SRR4302540.3544000/1‑94 (MQ=60)
                                                               TCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTT                               >  SRR4302540.6494591/1‑94 (MQ=60)
                                                               TCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTT                               >  SRR4302540.5944652/1‑94 (MQ=60)
                                                               TCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTT                               >  SRR4302540.5333034/1‑94 (MQ=60)
                                                                CAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTT                              >  SRR4302540.8613660/1‑94 (MQ=60)
                                                                CAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTT                              <  SRR4302540.4538455/94‑1 (MQ=60)
                                                                 CATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTACACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTC                             <  SRR4302540.967865/94‑1 (MQ=60)
                                                                 AATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTC                             <  SRR4302540.968177/94‑1 (MQ=60)
                                                                  ATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCT                            <  SRR4302540.2018560/94‑1 (MQ=60)
                                                                  ATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCT                            >  SRR4302540.7621297/1‑94 (MQ=60)
                                                                  ATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCT                            <  SRR4302540.4605607/94‑1 (MQ=60)
                                                                    GCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCAAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTC                          <  SRR4302540.9077203/94‑1 (MQ=60)
                                                                     CTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCG                         <  SRR4302540.8895843/94‑1 (MQ=60)
                                                                        ATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGAT                      >  SRR4302540.6379094/1‑94 (MQ=60)
                                                                        ATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGGCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGAT                      <  SRR4302540.2174121/94‑1 (MQ=60)
                                                                         TAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATC                     >  SRR4302540.1520001/1‑94 (MQ=60)
                                                                          AAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCC                    >  SRR4302540.1235379/1‑94 (MQ=60)
                                                                          AAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCC                    >  SRR4302540.8122336/1‑94 (MQ=60)
                                                                          AAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTNGTANGGGCNGGTTTTTNTNGNANCC                    >  SRR4302540.1757892/1‑94 (MQ=60)
                                                                           AAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCA                   <  SRR4302540.4624898/94‑1 (MQ=60)
                                                                            AGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAA                  <  SRR4302540.3504306/94‑1 (MQ=60)
                                                                             GGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAC                 <  SRR4302540.8694121/94‑1 (MQ=60)
                                                                             GGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCAGGGTTTCTTCGGATCCAAC                 >  SRR4302540.9099656/1‑94 (MQ=60)
                                                                              GTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACC                <  SRR4302540.6290559/94‑1 (MQ=60)
                                                                              GTGAAAAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACC                <  SRR4302540.7739917/94‑1 (MQ=60)
                                                                               TGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCA               <  SRR4302540.6882236/94‑1 (MQ=60)
                                                                               TGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTAGTACGGGCTGGTTTTCTTCGGATCCAACCA               >  SRR4302540.1237185/1‑94 (MQ=60)
                                                                                GAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG              <  SRR4302540.8966711/94‑1 (MQ=60)
                                                                                   GAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACT           <  SRR4302540.2437004/94‑1 (MQ=60)
                                                                                   GAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACT           <  SRR4302540.4422276/94‑1 (MQ=60)
                                                                                   GAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACT           >  SRR4302540.7712521/1‑94 (MQ=60)
                                                                                    AACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTG          <  SRR4302540.6702397/94‑1 (MQ=60)
                                                                                      CTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCG        <  SRR4302540.6951984/94‑1 (MQ=60)
                                                                                        TCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGACTTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCC      >  SRR4302540.4989550/1‑94 (MQ=60)
                                                                                          AGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGC    >  SRR4302540.7826043/1‑94 (MQ=60)
                                                                                            GGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  SRR4302540.2569038/1‑94 (MQ=60)
                                                                                            GGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  SRR4302540.2569379/1‑94 (MQ=60)
                                                                                            GGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  <  SRR4302540.5746468/94‑1 (MQ=60)
                                                                                             |                                                                                            
ACATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  NC_000913/1714342‑1714527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑