Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,714,435 A→G F271S (TTC→TCC)  tyrS ← tyrosine tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,714,4350AG100.0% 648.6 / NA 201F271S (TTC→TCC) tyrStyrosine tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (109/92);  total (109/92)

Only 100 of 208 total aligned reads displayed.

TACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCG  >  NC_000913/1714345‑1714524
                                                                                          |                                                                                         
tACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAg                                                                                         >  2:3811160/1‑93 (MQ=255)
tACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAg                                                                                         >  1:820456/1‑93 (MQ=255)
tACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAg                                                                                         >  1:2064702/1‑93 (MQ=255)
   tGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCgg                                                                                      >  2:3654255/1‑93 (MQ=255)
   tGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCgg                                                                                      <  2:4455395/93‑1 (MQ=255)
   tGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCgg                                                                                      >  1:4479407/1‑93 (MQ=255)
    gggCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGt                                                                                     >  2:5699640/1‑93 (MQ=255)
     ggCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTa                                                                                    <  1:3631685/93‑1 (MQ=255)
       ggcgcgGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTaaa                                                                                  <  1:1489234/92‑1 (MQ=255)
       cgcgcgGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTaaa                                                                                  <  1:4246285/93‑1 (MQ=255)
          gcgGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGt                                                                               <  2:6202242/93‑1 (MQ=255)
            ggTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCg                                                                             >  1:1425836/1‑93 (MQ=255)
            ggTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCg                                                                             <  2:2977417/93‑1 (MQ=255)
               gCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCa                                                                          >  2:1855811/1‑93 (MQ=255)
                cTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCAt                                                                         >  2:2011648/1‑93 (MQ=255)
                cTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCAt                                                                         <  2:5479208/93‑1 (MQ=255)
                 tttACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATc                                                                        >  2:2913217/1‑93 (MQ=255)
                 tttACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATc                                                                        <  1:4214846/93‑1 (MQ=255)
                 tttACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATc                                                                        <  1:3819977/93‑1 (MQ=255)
                  ttACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATcc                                                                       >  2:4677750/1‑93 (MQ=255)
                  ttACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATcc                                                                       >  2:2610531/1‑93 (MQ=255)
                      cGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAg                                                                   <  1:2753906/93‑1 (MQ=255)
                       gCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAgt                                                                  <  2:4172048/93‑1 (MQ=255)
                        cTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAgtg                                                                 >  1:4057846/1‑93 (MQ=255)
                        cTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAgtg                                                                 >  1:3979798/1‑93 (MQ=255)
                         tGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAgtgt                                                                <  2:2154754/93‑1 (MQ=255)
                          gTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGtt                                                               <  2:1284507/93‑1 (MQ=255)
                           tttttATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAgtggtg                                                              >  1:1892463/1‑93 (MQ=255)
                             tttATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGAt                                                            >  2:2834066/1‑93 (MQ=255)
                             tttATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGAt                                                            <  1:196308/93‑1 (MQ=255)
                               tATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATcc                                                          >  1:1227934/1‑93 (MQ=255)
                                aTCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCa                                                         >  1:4356375/1‑93 (MQ=255)
                                     cttcttcCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACt                                                    >  1:1670392/1‑93 (MQ=255)
                                      ttcttcCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTg                                                   >  1:6109222/1‑93 (MQ=255)
                                        cttcCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGt                                                 >  2:4446807/1‑93 (MQ=255)
                                         ttcCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTa                                                >  1:5881149/1‑93 (MQ=255)
                                         ttcCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTa                                                <  1:4657889/93‑1 (MQ=255)
                                            cAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGaa                                             >  2:1543993/1‑93 (MQ=255)
                                            cAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGaa                                             <  1:1073069/93‑1 (MQ=255)
                                            cAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGaa                                             >  2:556650/1‑93 (MQ=255)
                                             aGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAt                                            >  1:5000149/1‑93 (MQ=255)
                                             aGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAt                                            >  2:1130061/1‑93 (MQ=255)
                                               ggCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAttt                                          <  1:1288659/93‑1 (MQ=255)
                                                gCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTg                                         <  1:4863178/93‑1 (MQ=255)
                                                gCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTg                                         <  2:1207717/93‑1 (MQ=255)
                                                  gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTa                                       <  1:1161135/93‑1 (MQ=255)
                                                  gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTa                                       >  2:5126196/1‑93 (MQ=255)
                                                  gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTa                                       <  1:2263971/93‑1 (MQ=255)
                                                   ttGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAc                                      >  1:1904640/1‑93 (MQ=255)
                                                   ttGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAc                                      >  1:4525486/1‑93 (MQ=255)
                                                     gATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACgg                                    <  1:5206453/93‑1 (MQ=255)
                                                      aTCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACggg                                   <  1:44184/93‑1 (MQ=255)
                                                      aTCTCCTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAACCGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACggg                                   <  2:3298465/93‑1 (MQ=255)
                                                       tctcTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGc                                  >  1:6048846/1‑93 (MQ=255)
                                                        ctctTCAGTGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCt                                 >  1:515285/1‑93 (MQ=255)
                                                         tctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTg                                >  1:2334507/1‑93 (MQ=255)
                                                         tctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTg                                >  2:4289348/1‑93 (MQ=255)
                                                         tctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTg                                >  1:1878559/1‑93 (MQ=255)
                                                         tctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTg                                >  2:489254/1‑93 (MQ=255)
                                                          ctTCATTGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTgg                               >  2:2746895/1‑93 (MQ=255)
                                                          ctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTgg                               <  1:3046873/93‑1 (MQ=255)
                                                          ctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTgg                               >  2:5353232/1‑93 (MQ=255)
                                                          ctTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTgg                               >  1:3956676/1‑93 (MQ=255)
                                                           ttCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGt                              <  1:2778837/93‑1 (MQ=255)
                                                           ttCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGt                              >  2:5981794/1‑93 (MQ=255)
                                                            tCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGtt                             >  2:3543422/1‑93 (MQ=255)
                                                              aaTGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGtttt                           >  2:2535949/1‑93 (MQ=255)
                                                                tGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttct                         <  2:515392/93‑1 (MQ=255)
                                                                 gCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttctt                        >  1:5999226/1‑93 (MQ=255)
                                                                 gCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttctt                        <  1:5238604/93‑1 (MQ=255)
                                                                 gCTCATAAAGGTGAACAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttctt                        <  1:4784929/93‑1 (MQ=255)
                                                                  cTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttcttc                       <  2:3050058/93‑1 (MQ=255)
                                                                  cTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTttcttc                       <  2:4209594/93‑1 (MQ=255)
                                                                    cATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCgg                     <  1:689436/93‑1 (MQ=255)
                                                                    cATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCgg                     >  2:3328337/1‑93 (MQ=255)
                                                                    cATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCgg                     >  1:2505044/1‑93 (MQ=255)
                                                                     aTAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGa                    <  1:677397/93‑1 (MQ=255)
                                                                     aTAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGa                    <  1:1003709/93‑1 (MQ=255)
                                                                     aTAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGa                    >  1:3484347/1‑93 (MQ=255)
                                                                     aTAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGa                    >  2:3934795/1‑93 (MQ=255)
                                                                       aaaGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATc                  <  2:2953536/93‑1 (MQ=255)
                                                                        aaGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATcc                 <  2:2364713/93‑1 (MQ=255)
                                                                        aaGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATcc                 <  2:5621432/93‑1 (MQ=255)
                                                                          ggTGAAGAACTTCTGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGCTCCCGAACTTGTAGATGCTGTCCGGGCTGGTTTTCTTCGGCTCCac               >  2:1016599/1‑92 (MQ=255)
                                                                          ggTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCaa               >  1:4174418/1‑93 (MQ=255)
                                                                          ggTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCaa               <  1:5106519/93‑1 (MQ=255)
                                                                           gTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAc              <  1:230737/93‑1 (MQ=255)
                                                                           gTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAc              >  2:727534/1‑93 (MQ=255)
                                                                           gTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAc              <  1:5305528/93‑1 (MQ=255)
                                                                           gTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAc              >  1:5628695/1‑93 (MQ=255)
                                                                            tGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAcc             <  2:2657230/93‑1 (MQ=255)
                                                                             gaagaaCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCa            <  1:3161354/93‑1 (MQ=255)
                                                                             gaagaaCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCa            >  2:3886974/1‑93 (MQ=255)
                                                                             gaagaaCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCa            <  1:5812426/93‑1 (MQ=255)
                                                                              aagaaCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAg           <  2:4320718/93‑1 (MQ=255)
                                                                                 aaCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACt        <  1:242823/93‑1 (MQ=255)
                                                                                  aCTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCTAACCAGACTg       >  2:3161565/1‑93 (MQ=255)
                                                                                    ttCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTgcg     >  1:4048718/1‑93 (MQ=255)
                                                                                     tCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTgcgc    <  1:2452754/93‑1 (MQ=255)
                                                                                     tCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTgcgc    <  1:178293/93‑1 (MQ=255)
                                                                                          |                                                                                         
TACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCG  >  NC_000913/1714345‑1714524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  NC_000913/1714344‑1714527
                                                                                           |                                                                                            
ATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAG                                                                                            >  SRR4302533.2077428/1‑94 (MQ=60)
ATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAG                                                                                            >  SRR4302533.825268/1‑94 (MQ=60)
ATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTCCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAG                                                                                            <  SRR4302533.3602922/94‑1 (MQ=60)
  ACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCG                                                                                          >  SRR4302533.454950/1‑94 (MQ=60)
   CTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGG                                                                                         <  SRR4302533.2695123/94‑1 (MQ=60)
   CTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGG                                                                                         >  SRR4302533.5251956/1‑94 (MQ=60)
   CTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGG                                                                                         >  SRR4302533.4506505/1‑94 (MQ=60)
      GGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAA                                                                                      <  SRR4302533.3654029/94‑1 (MQ=60)
        GGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAAC                                                                                    <  SRR4302533.1498218/94‑1 (MQ=60)
        CGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAAC                                                                                    <  SRR4302533.4271917/94‑1 (MQ=60)
           GCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTC                                                                                 >  SRR4302533.6197036/1‑94 (MQ=60)
            CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCG                                                                                >  SRR4302533.1434457/1‑94 (MQ=60)
            CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCG                                                                                <  SRR4302533.614116/94‑1 (MQ=60)
            CGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCG                                                                                <  SRR4302533.2467591/94‑1 (MQ=60)
             GGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGG                                                                               >  SRR4302533.4201126/1‑94 (MQ=60)
             GGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGG                                                                               >  SRR4302533.4755604/1‑94 (MQ=60)
                  TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCC                                                                          <  SRR4302533.4240344/94‑1 (MQ=60)
                  TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCC                                                                          <  SRR4302533.3843336/94‑1 (MQ=60)
                  TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCC                                                                          <  SRR4302533.2326625/94‑1 (MQ=60)
                  TTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCC                                                                          >  SRR4302533.967204/1‑94 (MQ=60)
                    TACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGC                                                                        >  SRR4302533.1419005/1‑94 (MQ=60)
                    TACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGC                                                                        >  SRR4302533.1893303/1‑94 (MQ=60)
                     ACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCA                                                                       >  SRR4302533.4069081/1‑94 (MQ=60)
                       CGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGT                                                                     >  SRR4302533.2038198/1‑94 (MQ=60)
                       CGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGT                                                                     <  SRR4302533.2770793/94‑1 (MQ=60)
                        GCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTG                                                                    >  SRR4302533.4082547/1‑94 (MQ=60)
                        GCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTG                                                                    >  SRR4302533.4004026/1‑94 (MQ=60)
                          TGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTT                                                                  >  SRR4302533.6053534/1‑94 (MQ=60)
                           GTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGGTG                                                                 >  SRR4302533.1904017/1‑94 (MQ=60)
                            TTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGA                                                                <  SRR4302533.2077085/94‑1 (MQ=60)
                             TTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGAT                                                               >  SRR4302533.4842306/1‑94 (MQ=60)
                              TTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATC                                                              <  SRR4302533.197547/94‑1 (MQ=60)
                               TTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCC                                                             >  SRR4302533.1235287/1‑94 (MQ=60)
                                TATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCA                                                            >  SRR4302533.4382669/1‑94 (MQ=60)
                                 ATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAG                                                           >  SRR4302533.1853532/1‑94 (MQ=60)
                                 ATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAG                                                           >  SRR4302533.1175750/1‑94 (MQ=60)
                                    TTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAAC                                                        >  SRR4302533.2310018/1‑94 (MQ=60)
                                     TCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACT                                                       >  SRR4302533.1680487/1‑94 (MQ=60)
                                      CTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTG                                                      >  SRR4302533.6146103/1‑94 (MQ=60)
                                      CTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTG                                                      >  SRR4302533.2373878/1‑94 (MQ=60)
                                       TTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGG                                                     >  SRR4302533.3513047/1‑94 (MQ=60)
                                       TGCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGG                                                     <  SRR4302533.5051583/94‑1 (MQ=60)
                                         CTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTA                                                   >  SRR4302533.4642575/1‑94 (MQ=60)
                                         CTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTA                                                   >  SRR4302533.3095567/1‑94 (MQ=60)
                                         CTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTA                                                   <  SRR4302533.2091022/94‑1 (MQ=60)
                                         CTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTA                                                   >  SRR4302533.5916691/1‑94 (MQ=60)
                                          TTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAG                                                  <  SRR4302533.4686114/94‑1 (MQ=60)
                                           TCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGA                                                 >  SRR4302533.5887094/1‑94 (MQ=60)
                                            CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGTTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAA                                                <  SRR4302533.5676245/94‑1 (MQ=60)
                                             CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               >  SRR4302533.5030458/1‑94 (MQ=60)
                                             CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               >  SRR4302533.1908864/1‑94 (MQ=60)
                                             CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               <  SRR4302533.1079396/94‑1 (MQ=60)
                                             CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAAT                                               >  SRR4302533.1070646/1‑94 (MQ=60)
                                                GGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTG                                            <  SRR4302533.1296416/94‑1 (MQ=60)
                                                 GCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGT                                           <  SRR4302533.4892650/94‑1 (MQ=60)
                                                  CGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTA                                          <  SRR4302533.5441648/94‑1 (MQ=60)
                                                   GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         >  SRR4302533.4552885/1‑94 (MQ=60)
                                                   GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         >  SRR4302533.1916262/1‑94 (MQ=60)
                                                   GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         <  SRR4302533.2277981/94‑1 (MQ=60)
                                                   GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTAC                                         <  SRR4302533.1168103/94‑1 (MQ=60)
                                                     TGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGG                                       >  SRR4302533.4182483/1‑94 (MQ=60)
                                                     TGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGG                                       <  SRR4302533.3845514/94‑1 (MQ=60)
                                                      GATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGG                                      <  SRR4302533.5180222/94‑1 (MQ=60)
                                                      GATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGG                                      >  SRR4302533.5232095/1‑94 (MQ=60)
                                                      GATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGG                                      <  SRR4302533.5237821/94‑1 (MQ=60)
                                                      GATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGG                                      <  SRR4302533.5945019/94‑1 (MQ=60)
                                                       ATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGC                                     >  SRR4302533.6085492/1‑94 (MQ=60)
                                                       ATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGC                                     >  SRR4302533.4080269/1‑94 (MQ=60)
                                                       ATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGC                                     <  SRR4302533.44487/94‑1 (MQ=60)
                                                        TCTCTTCAGTGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCT                                    >  SRR4302533.518344/1‑94 (MQ=60)
                                                        TCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCT                                    <  SRR4302533.3472454/94‑1 (MQ=60)
                                                         CTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTG                                   >  SRR4302533.1463410/1‑94 (MQ=60)
                                                         CTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTG                                   >  SRR4302533.1890007/1‑94 (MQ=60)
                                                         CTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTG                                   >  SRR4302533.2348961/1‑94 (MQ=60)
                                                         CTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTG                                   <  SRR4302533.1138033/94‑1 (MQ=60)
                                                          TCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGG                                  >  SRR4302533.2794304/1‑94 (MQ=60)
                                                          TCTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGG                                  >  SRR4302533.3980793/1‑94 (MQ=60)
                                                           CTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGT                                 <  SRR4302533.3065527/94‑1 (MQ=60)
                                                           CTTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGT                                 <  SRR4302533.5301850/94‑1 (MQ=60)
                                                            TTCAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTT                                <  SRR4302533.2795907/94‑1 (MQ=60)
                                                              CAATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTT                              >  SRR4302533.3594702/1‑94 (MQ=60)
                                                               AATGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAGCTGGTAGAATTTGTACGGGCTGGTTTTT                             >  SRR4302533.600574/1‑94 (MQ=60)
                                                                 TGCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTT                           >  SRR4302533.6035563/1‑94 (MQ=60)
                                                                  GCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTC                          <  SRR4302533.3682884/94‑1 (MQ=60)
                                                                  GCTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTC                          <  SRR4302533.5270103/94‑1 (MQ=60)
                                                                  GCTCATAAAGGTGAACAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTC                          <  SRR4302533.4813911/94‑1 (MQ=60)
                                                                   CTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCG                         <  SRR4302533.1690749/94‑1 (MQ=60)
                                                                   CTCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCG                         <  SRR4302533.4268163/94‑1 (MQ=60)
                                                                    TCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGG                        <  SRR4302533.698379/94‑1 (MQ=60)
                                                                    TCATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGG                        >  SRR4302533.2520487/1‑94 (MQ=60)
                                                                    TCATAAAGGTGAAAAACTTCAGGGAGCGGTAAACGGCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGG                        <  SRR4302533.1285662/94‑1 (MQ=60)
                                                                     CATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGA                       >  SRR4302533.3505835/1‑94 (MQ=60)
                                                                     CATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGA                       <  SRR4302533.693514/94‑1 (MQ=60)
                                                                      ATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGAT                      <  SRR4302533.1009576/94‑1 (MQ=60)
                                                                      ATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGAT                      <  SRR4302533.681401/94‑1 (MQ=60)
                                                                      ATAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGAT                      >  SRR4302533.4395958/1‑94 (MQ=60)
                                                                       TAAAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGATCTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATC                     <  SRR4302533.4583948/94‑1 (MQ=60)
                                                                         AAGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCA                   >  SRR4302533.689169/1‑94 (MQ=60)
                                                                          AGGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAA                  >  SRR4302533.4199713/1‑94 (MQ=60)
                                                                           GGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAC                 >  SRR4302533.5662731/1‑94 (MQ=60)
                                                                           GGTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAAC                 <  SRR4302533.5137368/94‑1 (MQ=60)
                                                                            GTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACC                <  SRR4302533.232166/94‑1 (MQ=60)
                                                                            GTGAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACC                <  SRR4302533.5337323/94‑1 (MQ=60)
                                                                              GAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG              <  SRR4302533.5847531/94‑1 (MQ=60)
                                                                              GAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG              <  SRR4302533.398464/94‑1 (MQ=60)
                                                                              GAAGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG              <  SRR4302533.3180807/94‑1 (MQ=60)
                                                                                AGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGAC            <  SRR4302533.4488619/94‑1 (MQ=60)
                                                                                AGAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGAC            <  SRR4302533.2863449/94‑1 (MQ=60)
                                                                                 GAACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACT           <  SRR4302533.5011982/94‑1 (MQ=60)
                                                                                  AACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTG          <  SRR4302533.244327/94‑1 (MQ=60)
                                                                                   ACTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGC         >  SRR4302533.2479970/1‑94 (MQ=60)
                                                                                    CTTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCG        >  SRR4302533.4073375/1‑94 (MQ=60)
                                                                                     TTCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGGTTTCTTCGGATCCAACCAGACTGCGC       >  SRR4302533.195565/1‑94 (MQ=60)
                                                                                      TCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCC      <  SRR4302533.2467891/94‑1 (MQ=60)
                                                                                      TCAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCC      <  SRR4302533.179409/94‑1 (MQ=60)
                                                                                       CAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCG     <  SRR4302533.430254/94‑1 (MQ=60)
                                                                                       CAGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCG     >  SRR4302533.1607085/1‑94 (MQ=60)
                                                                                        AGGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGC    >  SRR4302533.5874949/1‑94 (MQ=60)
                                                                                         GGGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCC   >  SRR4302533.4810557/1‑94 (MQ=60)
                                                                                          GGAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGCAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  SRR4302533.874751/1‑94 (MQ=60)
                                                                                           |                                                                                            
ATACTGGGCGCGCGGTGCTTTACCGCTGTTTTTATCTTCTTCTTCCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCT  >  NC_000913/1714344‑1714527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑