Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCATA  >  NC_000913/1720223‑1720409
                                                                                             |                                                                                             
AATACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGACCCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCT                                                                                               <  SRR4302540.2286085/94‑1 (MQ=60)
   ACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGGTTTC                                                                                            >  SRR4302540.283698/1‑94 (MQ=60)
   ACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTC                                                                                            <  SRR4302540.6533174/94‑1 (MQ=60)
   ACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTC                                                                                            >  SRR4302540.3206633/1‑94 (MQ=60)
    CCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCC                                                                                           <  SRR4302540.5249367/94‑1 (MQ=60)
    CCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCC                                                                                           <  SRR4302540.7578495/94‑1 (MQ=60)
     CATTGCCATGTGTGGGGCGCTGACGGTTGCCTATTAGTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCC                                                                                          <  SRR4302540.9302350/94‑1 (MQ=60)
      ATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCA                                                                                         >  SRR4302540.8223648/1‑94 (MQ=60)
       TTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCAC                                                                                        <  SRR4302540.2290162/94‑1 (MQ=60)
           CATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTT                                                                                    <  SRR4302540.7019049/94‑1 (MQ=60)
            ATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTG                                                                                   <  SRR4302540.8181761/94‑1 (MQ=60)
            ATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTG                                                                                   >  SRR4302540.5444828/1‑94 (MQ=60)
               TGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCG                                                                                >  SRR4302540.1686687/1‑94 (MQ=60)
               TGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCG                                                                                >  SRR4302540.5430110/1‑94 (MQ=60)
               TGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCG                                                                                >  SRR4302540.140710/1‑94 (MQ=60)
                  CTGGCGCTGACGGTTGCCTGTTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTACCACCGTTGGCGGTG                                                                             >  SRR4302540.8438119/1‑94 (MQ=60)
                  CTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTG                                                                             >  SRR4302540.5439164/1‑94 (MQ=60)
                  CTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTG                                                                             <  SRR4302540.8687271/94‑1 (MQ=60)
                  CTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTG                                                                             <  SRR4302540.3108502/94‑1 (MQ=60)
                  CTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTG                                                                             >  SRR4302540.1034287/1‑94 (MQ=60)
                    GGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTT                                                                           >  SRR4302540.741359/1‑94 (MQ=60)
                      CGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTAT                                                                         >  SRR4302540.8083910/1‑94 (MQ=60)
                       GCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATC                                                                        <  SRR4302540.8864481/94‑1 (MQ=60)
                        CTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCA                                                                       >  SRR4302540.2813469/1‑94 (MQ=60)
                        CTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCA                                                                       >  SRR4302540.3717809/1‑94 (MQ=60)
                              GTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAG                                                                 >  SRR4302540.2900130/1‑94 (MQ=60)
                                 GCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCC                                                              >  SRR4302540.471141/1‑94 (MQ=60)
                                  CCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCT                                                             <  SRR4302540.6183323/94‑1 (MQ=60)
                                  CCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCT                                                             >  SRR4302540.4514966/1‑94 (MQ=60)
                                  CCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCT                                                             <  SRR4302540.1307512/94‑1 (MQ=60)
                                   CTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTC                                                            >  SRR4302540.4457963/1‑94 (MQ=60)
                                   CTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTC                                                            <  SRR4302540.2052953/94‑1 (MQ=60)
                                    TATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           <  SRR4302540.7738509/94‑1 (MQ=60)
                                    TATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           <  SRR4302540.6661105/94‑1 (MQ=60)
                                    TATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           <  SRR4302540.5557310/94‑1 (MQ=60)
                                    TATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           >  SRR4302540.8246352/1‑94 (MQ=60)
                                    TATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           >  SRR4302540.4307302/1‑94 (MQ=60)
                                    CATTATTTAAATCTGGATGAACCCTAGTGGGCGATGACCGCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCG                                                           <  SRR4302540.6661106/94‑1 (MQ=60)
                                     TTTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGG                                                          <  SRR4302540.132873/94‑1 (MQ=60)
                                      TTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGC                                                         >  SRR4302540.3438101/1‑94 (MQ=60)
                                       TATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGAC                                                        <  SRR4302540.7448841/94‑1 (MQ=60)
                                       TATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGAC                                                        <  SRR4302540.5572554/94‑1 (MQ=60)
                                       TATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGAC                                                        <  SRR4302540.2396162/94‑1 (MQ=60)
                                        ATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCTGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACG                                                       >  SRR4302540.8359393/1‑94 (MQ=60)
                                        ATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACG                                                       >  SRR4302540.1647417/1‑94 (MQ=60)
                                        ATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACG                                                       >  SRR4302540.8359394/1‑94 (MQ=60)
                                         TTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGC                                                      >  SRR4302540.7997484/1‑94 (MQ=60)
                                          TTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCTTCGGACGCA                                                     >  SRR4302540.6447443/1‑94 (MQ=60)
                                           TAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCAT                                                    <  SRR4302540.4195194/94‑1 (MQ=60)
                                            AAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATC                                                   >  SRR4302540.109075/1‑94 (MQ=60)
                                            AAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATC                                                   <  SRR4302540.3530133/94‑1 (MQ=60)
                                            AAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATC                                                   <  SRR4302540.1274187/94‑1 (MQ=60)
                                            AAAACTGGATGAACCCTATGGGGCGATGACCCCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATC                                                   <  SRR4302540.1274186/94‑1 (MQ=60)
                                             AATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCG                                                  >  SRR4302540.5038084/1‑94 (MQ=60)
                                             AATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCG                                                  >  SRR4302540.2336541/1‑94 (MQ=60)
                                             AATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGAATCG                                                  >  SRR4302540.2336540/1‑94 (MQ=60)
                                              ATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATNANCAAAAGCCTCNGACGCATCGC                                                 >  SRR4302540.9209778/1‑94 (MQ=60)
                                              ATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGC                                                 >  SRR4302540.9159671/1‑94 (MQ=60)
                                               TCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCT                                                <  SRR4302540.6811389/94‑1 (MQ=60)
                                               TCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCT                                                <  SRR4302540.6811388/94‑1 (MQ=60)
                                                CTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTG                                               >  SRR4302540.5679550/1‑94 (MQ=60)
                                                CTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGCTATCAGCAAAAGCCTCGGACGCATCGCTG                                               >  SRR4302540.10009400/1‑94 (MQ=60)
                                                CTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTG                                               <  SRR4302540.6390738/94‑1 (MQ=60)
                                                   GATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCA                                            <  SRR4302540.4098098/94‑1 (MQ=60)
                                                    ATGACCCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAG                                           <  SRR4302540.6215187/94‑1 (MQ=60)
                                                    ATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAG                                           >  SRR4302540.254754/1‑94 (MQ=60)
                                                    ATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAG                                           <  SRR4302540.6215188/94‑1 (MQ=60)
                                                    ATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAG                                           <  SRR4302540.4613788/94‑1 (MQ=60)
                                                     TGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGT                                          >  SRR4302540.9157819/1‑94 (MQ=60)
                                                     TGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGT                                          <  SRR4302540.7495772/94‑1 (MQ=60)
                                                         CCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGC                                      >  SRR4302540.4614150/1‑94 (MQ=60)
                                                         CCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGC                                      >  SRR4302540.4614149/1‑94 (MQ=60)
                                                           CTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTC                                    >  SRR4302540.9847248/1‑94 (MQ=60)
                                                             ATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCGCCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGG                                  <  SRR4302540.8113167/94‑1 (MQ=60)
                                                             ATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGG                                  <  SRR4302540.4360403/94‑1 (MQ=60)
                                                             ATTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGG                                  >  SRR4302540.4434139/1‑94 (MQ=60)
                                                              TTGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGA                                 <  SRR4302540.998283/94‑1 (MQ=60)
                                                               TGGGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAG                                <  SRR4302540.7051916/94‑1 (MQ=60)
                                                                GGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGC                               <  SRR4302540.8972291/94‑1 (MQ=60)
                                                                 GGCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCC                              <  SRR4302540.2042417/94‑1 (MQ=60)
                                                                  GCGATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCA                             <  SRR4302540.5405271/94‑1 (MQ=60)
                                                                    GATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATT                           <  SRR4302540.3928993/94‑1 (MQ=60)
                                                                    GATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATT                           >  SRR4302540.9309868/1‑94 (MQ=60)
                                                                     ATGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTG                          <  SRR4302540.534022/94‑1 (MQ=60)
                                                                      TGACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGC                         <  SRR4302540.9819632/94‑1 (MQ=60)
                                                                       GACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCG                        <  SRR4302540.3738537/94‑1 (MQ=60)
                                                                       GACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCG                        >  SRR4302540.8818024/1‑94 (MQ=60)
                                                                       GACCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCG                        <  SRR4302540.4201591/94‑1 (MQ=60)
                                                                         CCTCGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGC                      >  SRR4302540.3139735/1‑94 (MQ=60)
                                                                          CTCGTCTGCAGTGGTTAGGCTTCCCTCCGTTGGCGGTGTTATCAGCAATAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCA                     <  SRR4302540.6982909/94‑1 (MQ=60)
                                                                            CGGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACT                   <  SRR4302540.6866550/94‑1 (MQ=60)
                                                                             GGCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTG                  >  SRR4302540.2176566/1‑94 (MQ=60)
                                                                              GCTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGC                 >  SRR4302540.8799885/1‑94 (MQ=60)
                                                                               CTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCT                >  SRR4302540.8772331/1‑94 (MQ=60)
                                                                               CTGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCT                >  SRR4302540.6513141/1‑94 (MQ=60)
                                                                                TGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTT               >  SRR4302540.8331011/1‑94 (MQ=60)
                                                                                TGCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTT               >  SRR4302540.9932251/1‑94 (MQ=60)
                                                                                 GCAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTCCTCGGAGCCATTGCGGCACTGCTTC              >  SRR4302540.2780305/1‑94 (MQ=60)
                                                                                  GAGTGGTTAGCCTTCCGACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGTCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCT             <  SRR4302540.5597863/94‑1 (MQ=60)
                                                                                  CAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCT             <  SRR4302540.3888126/94‑1 (MQ=60)
                                                                                  CAGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCT             <  SRR4302540.1585652/94‑1 (MQ=60)
                                                                                   AGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTT            <  SRR4302540.8041722/94‑1 (MQ=60)
                                                                                   AGTGGTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTT            <  SRR4302540.7350357/94‑1 (MQ=60)
                                                                                       GTTAGCCTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCG        >  SRR4302540.3001790/1‑94 (MQ=60)
                                                                                          AGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGC     >  SRR4302540.167797/1‑94 (MQ=60)
                                                                                            CTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCAT   <  SRR4302540.6462744/94‑1 (MQ=60)
                                                                                             TTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCATA  <  SRR4302540.4061056/94‑1 (MQ=60)
                                                                                             CTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCATA  >  SRR4302540.4379061/1‑94 (MQ=60)
                                                                                             |                                                                                             
AATACCATTGCCATGTGTCTGGCGCTGACGGTTGCCTATTATTTAAATCTGGATGAACCCTATTGGGCGATGACCTCGGCTGCAGTGGTTAGCTTTCCCACCGTTGGCGGTGTTATCAGCAAAAGCCTCGGACGCATCGCTGGCAGTTTGCTCGGAGCCATTGCGGCACTGCTTCTTGCCGGGCATA  >  NC_000913/1720223‑1720409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑