Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGC  >  NC_000913/2674083‑2674268
                                                                                             |                                                                                            
CGTTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAAT                                                                                              <  SRR4302540.327279/94‑1 (MQ=60)
 GTTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCAGCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACG                                                                                             <  SRR4302540.2572596/94‑1 (MQ=60)
 GTTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATG                                                                                             >  SRR4302540.2595107/1‑94 (MQ=60)
  TTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATCAGAATGC                                                                                            >  SRR4302540.4106876/1‑94 (MQ=60)
   TTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCG                                                                                           <  SRR4302540.7055338/94‑1 (MQ=60)
   TTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCG                                                                                           <  SRR4302540.5795412/94‑1 (MQ=60)
    TGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGC                                                                                          <  SRR4302540.1414475/94‑1 (MQ=60)
    TGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGC                                                                                          <  SRR4302540.8136509/94‑1 (MQ=60)
    TGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGC                                                                                          <  SRR4302540.4370185/94‑1 (MQ=60)
      CGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCAC                                                                                        >  SRR4302540.8821244/1‑94 (MQ=60)
      CGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCAC                                                                                        >  SRR4302540.5630205/1‑94 (MQ=60)
       GGCCCCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACC                                                                                       <  SRR4302540.1904432/94‑1 (MQ=60)
        GCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGATAGGGTAAAGATAAGAATGCGCACCC                                                                                      <  SRR4302540.3146320/94‑1 (MQ=60)
         CACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCG                                                                                     <  SRR4302540.6804410/94‑1 (MQ=60)
         CACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAAGGTAAAGATAAGAATGCGCACCCG                                                                                     >  SRR4302540.5986932/1‑94 (MQ=60)
          ACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGA                                                                                    >  SRR4302540.8076903/1‑94 (MQ=60)
          ACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGA                                                                                    >  SRR4302540.4815528/1‑94 (MQ=60)
           CCTGCGTTACCAGAACCGAGGCGCGCCGCCAACACAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGAC                                                                                   >  SRR4302540.7982663/1‑94 (MQ=60)
           CCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGAC                                                                                   <  SRR4302540.9990020/94‑1 (MQ=60)
           CCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGAC                                                                                   >  SRR4302540.6353822/1‑94 (MQ=60)
            CTGCGTTCCCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACG                                                                                  <  SRR4302540.850593/94‑1 (MQ=60)
            CTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACG                                                                                  <  SRR4302540.850594/94‑1 (MQ=60)
            CTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACA                                                                                  >  SRR4302540.8824224/1‑94 (MQ=60)
                GTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACG                                                                              >  SRR4302540.8911244/1‑94 (MQ=60)
                   tccagaaccgaggccggcacccagaAAAATGCCGGTCACCGCCGCTAATAATCGCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTG                                                                           <  SRR4302540.7837780/69‑1 (MQ=60)
                   ACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTG                                                                           >  SRR4302540.3701907/1‑94 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.1883466/94‑1 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.7482350/94‑1 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.4669512/94‑1 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         >  SRR4302540.3470989/1‑94 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.6610545/94‑1 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.4152373/94‑1 (MQ=60)
                     CAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.8114190/94‑1 (MQ=60)
                     CAGAACCGAGGCCCGCCACCAAAAAAATGCCGGTCCCCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGAT                                                                         <  SRR4302540.6623781/94‑1 (MQ=60)
                      CGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAACCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATG                                                                        <  SRR4302540.3454608/94‑1 (MQ=60)
                       GAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGC                                                                       <  SRR4302540.5989495/94‑1 (MQ=60)
                       GAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGC                                                                       >  SRR4302540.3530002/1‑94 (MQ=60)
                        AACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCC                                                                      >  SRR4302540.2953491/1‑94 (MQ=60)
                        AACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCC                                                                      <  SRR4302540.3033495/94‑1 (MQ=60)
                         ACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCG                                                                     >  SRR4302540.235537/1‑94 (MQ=60)
                          CCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGC                                                                    <  SRR4302540.893969/94‑1 (MQ=60)
                           CGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCA                                                                   >  SRR4302540.9989605/1‑94 (MQ=60)
                            GAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCAC                                                                  >  SRR4302540.268596/1‑94 (MQ=60)
                              GGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAA                                                                >  SRR4302540.8008320/1‑94 (MQ=60)
                              GGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAA                                                                <  SRR4302540.150475/94‑1 (MQ=60)
                               GCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAAC                                                               <  SRR4302540.4428183/94‑1 (MQ=60)
                                 GCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTG                                                             >  SRR4302540.8559871/1‑94 (MQ=60)
                                    CCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGC                                                          >  SRR4302540.201519/1‑94 (MQ=60)
                                     CGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCC                                                         <  SRR4302540.8089196/94‑1 (MQ=60)
                                      GCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCG                                                        >  SRR4302540.4973158/1‑94 (MQ=60)
                                      GCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCG                                                        >  SRR4302540.4973157/1‑94 (MQ=60)
                                        CAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCC                                                      <  SRR4302540.2651806/94‑1 (MQ=60)
                                        CAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCC                                                      <  SRR4302540.3874142/94‑1 (MQ=60)
                                         AACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCG                                                     >  SRR4302540.1557301/1‑94 (MQ=60)
                                         AACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCG                                                     <  SRR4302540.5274636/94‑1 (MQ=60)
                                          ACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGT                                                    <  SRR4302540.978372/94‑1 (MQ=60)
                                          ACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGT                                                    >  SRR4302540.7187533/1‑94 (MQ=60)
                                           CAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTA                                                   >  SRR4302540.7485523/1‑94 (MQ=60)
                                           CAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTA                                                   >  SRR4302540.10130124/1‑94 (MQ=60)
                                            AAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAG                                                  >  SRR4302540.4911834/1‑94 (MQ=60)
                                              AATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGAGCACCCGACGAACGTTGATGCCGCACACCTGCGCCCCCGTAGCA                                                >  SRR4302540.2462380/1‑94 (MQ=60)
                                               ATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCAT                                               <  SRR4302540.4640826/94‑1 (MQ=60)
                                                TGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATT                                              <  SRR4302540.3891285/94‑1 (MQ=60)
                                                  CCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTAC                                            <  SRR4302540.4073369/94‑1 (MQ=60)
                                                    GGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCG                                          >  SRR4302540.4046243/1‑94 (MQ=60)
                                                       CACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCA                                       <  SRR4302540.8852951/94‑1 (MQ=60)
                                                        ACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAA                                      >  SRR4302540.825708/1‑94 (MQ=60)
                                                          CGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACG                                    >  SRR4302540.7401618/1‑94 (MQ=60)
                                                           GCGGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGG                                   <  SRR4302540.6248187/94‑1 (MQ=60)
                                                             CGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCA                                 <  SRR4302540.1843413/94‑1 (MQ=60)
                                                             CGCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCA                                 >  SRR4302540.616130/1‑94 (MQ=60)
                                                              GCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAA                                <  SRR4302540.5967570/94‑1 (MQ=60)
                                                              GCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAA                                >  SRR4302540.2358011/1‑94 (MQ=60)
                                                              GCTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAA                                >  SRR4302540.9026732/1‑94 (MQ=60)
                                                               CTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAA                               <  SRR4302540.9332568/94‑1 (MQ=60)
                                                               CTAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAA                               >  SRR4302540.2734250/1‑94 (MQ=60)
                                                                TAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAA                              >  SRR4302540.586021/1‑94 (MQ=60)
                                                                TAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAA                              >  SRR4302540.586019/1‑94 (MQ=60)
                                                                TAATAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAA                              >  SRR4302540.7954214/1‑94 (MQ=60)
                                                                 AATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAA                             >  SRR4302540.6351366/1‑94 (MQ=60)
                                                                   TACTCCCGAAAGGGAAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACC                           <  SRR4302540.5849492/94‑1 (MQ=60)
                                                                   TAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACC                           >  SRR4302540.8532906/1‑94 (MQ=60)
                                                                   TAATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACC                           >  SRR4302540.7890547/1‑94 (MQ=60)
                                                                    AATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGTCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCG                          >  SRR4302540.155671/1‑94 (MQ=60)
                                                                    AATCCCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCG                          <  SRR4302540.665669/94‑1 (MQ=60)
                                                                     ATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGA                         >  SRR4302540.9756670/1‑94 (MQ=60)
                                                                     ATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGA                         <  SRR4302540.7430152/94‑1 (MQ=60)
                                                                     ATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGA                         <  SRR4302540.7430151/94‑1 (MQ=60)
                                                                      TCCCGAAAGGGTAAAGATAAGAATGCGCCCCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAG                        <  SRR4302540.3499734/94‑1 (MQ=60)
                                                                      TCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAG                        >  SRR4302540.1886899/1‑94 (MQ=60)
                                                                      TCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAG                        <  SRR4302540.1431911/94‑1 (MQ=60)
                                                                       CCGGAAAGGGTAAAGATAAGATTGCGCGCCCGACAACCGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGC                       <  SRR4302540.1737440/94‑1 (MQ=60)
                                                                       CCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGC                       >  SRR4302540.495471/1‑94 (MQ=60)
                                                                        CCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCG                      >  SRR4302540.7323118/1‑94 (MQ=60)
                                                                        CCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCG                      >  SRR4302540.151460/1‑94 (MQ=60)
                                                                        CCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCG                      >  SRR4302540.9944677/1‑94 (MQ=60)
                                                                        CCGAAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCG                      >  SRR4302540.2348637/1‑94 (MQ=60)
                                                                          GAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCC                    >  SRR4302540.4565888/1‑94 (MQ=60)
                                                                           AAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCGGCACAACTGCGCCGCCGTAGCATTACCGCCCACGGCAAAAACCGAGCGCCC                   >  SRR4302540.598152/1‑94 (MQ=60)
                                                                           AAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCC                   <  SRR4302540.5381599/94‑1 (MQ=60)
                                                                           AAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCC                   >  SRR4302540.6766904/1‑94 (MQ=60)
                                                                           AAAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCC                   <  SRR4302540.157912/94‑1 (MQ=60)
                                                                            AAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCG                  <  SRR4302540.5178036/94‑1 (MQ=60)
                                                                            AAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCG                  >  SRR4302540.1134093/1‑94 (MQ=60)
                                                                            AAGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCG                  <  SRR4302540.80324/94‑1 (MQ=60)
                                                                             AGGGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGA                 >  SRR4302540.6149052/1‑94 (MQ=60)
                                                                               GGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAG               <  SRR4302540.4252067/94‑1 (MQ=60)
                                                                               GGTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAG               >  SRR4302540.425889/1‑94 (MQ=60)
                                                                                GTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGG              >  SRR4302540.7612143/1‑94 (MQ=60)
                                                                                GTAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGC              >  SRR4302540.6670288/1‑94 (MQ=60)
                                                                                 TAAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGC             >  SRR4302540.5653452/1‑94 (MQ=60)
                                                                                  AAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCG            >  SRR4302540.1870300/1‑94 (MQ=60)
                                                                                  AAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCG            >  SRR4302540.3473283/1‑94 (MQ=60)
                                                                                  AAAGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCG            <  SRR4302540.7395828/94‑1 (MQ=60)
                                                                                    AGATAAGACCGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGT          <  SRR4302540.8517380/94‑1 (MQ=60)
                                                                                    AGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGT          >  SRR4302540.7039948/1‑94 (MQ=60)
                                                                                    AGATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGT          >  SRR4302540.550911/1‑94 (MQ=60)
                                                                                      ATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTT        >  SRR4302540.3805620/1‑94 (MQ=60)
                                                                                      ATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTT        <  SRR4302540.2288330/94‑1 (MQ=60)
                                                                                      ATAAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTT        >  SRR4302540.8185269/1‑94 (MQ=60)
                                                                                        AAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTG      >  SRR4302540.183211/1‑94 (MQ=60)
                                                                                        AAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTG      <  SRR4302540.9249881/94‑1 (MQ=60)
                                                                                        AAGAACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTG      <  SRR4302540.8207935/94‑1 (MQ=60)
                                                                                          GAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCG    <  SRR4302540.6824216/94‑1 (MQ=60)
                                                                                          GAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCG    <  SRR4302540.9142271/94‑1 (MQ=60)
                                                                                          GAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCG    >  SRR4302540.1504220/1‑94 (MQ=60)
                                                                                           AATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGG   <  SRR4302540.5575519/94‑1 (MQ=60)
                                                                                           AACGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGG   >  SRR4302540.6016049/1‑94 (MQ=60)
                                                                                            ATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGC  <  SRR4302540.4192969/94‑1 (MQ=60)
                                                                                            ATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGC  >  SRR4302540.4083500/1‑94 (MQ=60)
                                                                                             |                                                                                            
CGTTTGCGGCACCTGCGTTACCAGAACCGAGGCGCGCCGCCAACAAAATGCCGGTCACCGCCGCTAATAATCCCGAAAGGGTAAAGATAAGAATGCGCACCCGACGAACGTTGATGCCGCACAACTGCGCCGCCGTAGCATTACCGCCAACGGCAAAAACCGAGCGCCCGAAGGCGGTTTTGCGGC  >  NC_000913/2674083‑2674268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑