Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
723,954 |
G→A |
G83G (GGC→GGT) |
kdpC ← |
KdpC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 723,954 | 0 | G | A | 99.5%
| 733.7
/ NA
| 202 | G83G (GGC→GGT) | kdpC | KdpC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (118/83); minor base C (0/1); total (118/84) |
| Fisher's exact test for biased strand distribution p-value = 4.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
GCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCGCCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAA > NC_000913/723864‑724043
|
gcTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCAcc > 2:5176940/1‑93 (MQ=255)
gcTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCAcc > 1:1962899/1‑93 (MQ=255)
tGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGTGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGTCCTCCAGATTGCTCCCACCAg < 2:4006206/93‑1 (MQ=255)
tGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAg > 2:3859050/1‑93 (MQ=255)
tGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAg < 1:666871/93‑1 (MQ=255)
gCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGaa > 2:519249/1‑93 (MQ=255)
gCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGaa < 1:5210567/93‑1 (MQ=255)
gCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGaa < 2:2683840/93‑1 (MQ=255)
gCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGaa < 2:3576170/93‑1 (MQ=255)
aTCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGc > 1:761896/1‑93 (MQ=255)
aTCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGc > 2:2978149/1‑93 (MQ=255)
tCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGcc < 2:2088317/93‑1 (MQ=255)
tCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGcc > 1:4922773/1‑93 (MQ=255)
tCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGcc < 1:2846194/93‑1 (MQ=255)
tCCAGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGcc > 2:3587076/1‑93 (MQ=255)
cGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCtg > 1:3609068/1‑93 (MQ=255)
ggTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCtgtg > 2:1723777/1‑93 (MQ=255)
gTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTgg < 1:163802/93‑1 (MQ=255)
aGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGAtt < 2:4719677/93‑1 (MQ=255)
cGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATtat < 1:2066477/93‑1 (MQ=255)
ggCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATtata > 1:3071874/1‑93 (MQ=255)
gCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAg < 2:67461/93‑1 (MQ=255)
gCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAg < 2:2517056/93‑1 (MQ=255)
ccGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAggg > 1:2208936/1‑93 (MQ=255)
cGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGc > 2:4784303/1‑93 (MQ=255)
gTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCa < 1:1124122/93‑1 (MQ=255)
tGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTc < 2:3082802/93‑1 (MQ=255)
tGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTc < 2:1093264/93‑1 (MQ=255)
tGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTc < 1:689947/93‑1 (MQ=255)
agcaACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGc > 2:3054825/1‑93 (MQ=255)
agcaACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGc < 2:4645996/93‑1 (MQ=255)
gcaACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGcc < 1:145170/93‑1 (MQ=255)
caACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCg > 1:4357067/1‑93 (MQ=255)
aaCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGt > 1:408490/1‑93 (MQ=255)
aaCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGt > 1:5135544/1‑93 (MQ=255)
aaCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGt > 1:3329239/1‑93 (MQ=255)
aCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGtt < 1:383072/93‑1 (MQ=255)
aCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGtt > 1:5975995/1‑93 (MQ=255)
aCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGtt > 1:2726331/1‑93 (MQ=255)
aCGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGtt < 2:212803/93‑1 (MQ=255)
gcgTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGc < 1:6044860/93‑1 (MQ=255)
gTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCg > 1:5892782/1‑93 (MQ=255)
tGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGa < 1:3770620/93‑1 (MQ=255)
tGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGa > 1:1769172/1‑93 (MQ=255)
tGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGa > 1:4794377/1‑93 (MQ=255)
gCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGAc < 1:1585893/93‑1 (MQ=255)
ggCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACgg > 2:2359737/1‑93 (MQ=255)
cTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGc < 2:4569622/93‑1 (MQ=255)
cTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGc < 1:4503199/93‑1 (MQ=255)
cTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGc > 2:4205328/1‑93 (MQ=255)
cTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGc < 1:1840214/93‑1 (MQ=255)
cTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGc > 1:794268/1‑93 (MQ=255)
tATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCg > 2:1862914/1‑93 (MQ=255)
aTTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGa < 2:2596584/93‑1 (MQ=255)
aTTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGa > 2:3771662/1‑93 (MQ=255)
aTTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGa > 2:1907852/1‑93 (MQ=255)
ttAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGAc > 2:4129314/1‑93 (MQ=255)
gTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCAt > 2:4863801/1‑93 (MQ=255)
tATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGaa < 1:2976209/93‑1 (MQ=255)
aTCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAATCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGaaa < 2:6214896/93‑1 (MQ=255)
aTCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGaaa > 1:6285020/1‑93 (MQ=255)
aTCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGaaa > 1:1594454/1‑93 (MQ=255)
ccAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAAt < 1:1099090/93‑1 (MQ=255)
ccAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAAt > 1:1454732/1‑93 (MQ=255)
cAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATa > 1:3992928/1‑93 (MQ=255)
aGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAg > 2:5308536/1‑93 (MQ=255)
gCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGTCGGGCGACCATGAAAATAGc > 1:1626228/1‑93 (MQ=255)
gCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGc < 2:1454691/93‑1 (MQ=255)
tCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCg > 1:735345/1‑93 (MQ=255)
cAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGt < 2:1275061/93‑1 (MQ=255)
cAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGt < 1:5354355/93‑1 (MQ=255)
aGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGtt < 2:2719972/93‑1 (MQ=255)
gggTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGGCCATGAAAATAGCCGTTg < 1:2171890/93‑1 (MQ=255)
gggTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTg > 2:417615/1‑93 (MQ=255)
gTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGcc > 1:2279434/1‑93 (MQ=255)
ttACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCg > 2:3456107/1‑93 (MQ=255)
tACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCgg < 1:907694/93‑1 (MQ=255)
aCTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGt > 2:5454077/1‑93 (MQ=255)
tGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTaa > 1:5430835/1‑93 (MQ=255)
gACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCAGTTGCCgggaga > 2:3264146/1‑89 (MQ=255)
aCCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTaaaa < 2:428531/93‑1 (MQ=255)
aCCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTaaaa > 1:4296123/1‑93 (MQ=255)
aCCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTaaaa < 1:6290210/93‑1 (MQ=255)
gCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTc < 2:756354/93‑1 (MQ=255)
gCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTc > 2:5594027/1‑93 (MQ=255)
gCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCAGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTc < 2:4468904/93‑1 (MQ=255)
ccAGATTGCTCCCACCAGAGGCCGGTGGATTAGAGGGCATTTCTGCCGGTGCCGACGGGATACCATGAAAATAGCCGTTGCCGGTAAAATTCt < 2:3127842/93‑1 (MQ=255)
ccAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCACGAAAATAGCCGTTGCCGGTAAAATTCt > 1:6199732/1‑93 (MQ=255)
aGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGc < 1:6140023/93‑1 (MQ=255)
aGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGc > 2:5695742/1‑93 (MQ=255)
aGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGc > 1:1879625/1‑93 (MQ=255)
ttGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCg > 1:2446086/1‑93 (MQ=255)
ttGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCg > 2:2095460/1‑93 (MQ=255)
tGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGa < 1:4683/93‑1 (MQ=255)
tCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTa > 2:4328003/1‑93 (MQ=255)
tCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTa > 2:1198674/1‑93 (MQ=255)
cccACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTaa < 2:1128771/93‑1 (MQ=255)
cccACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTaa > 2:584818/1‑93 (MQ=255)
cccACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTaa > 2:6011303/1‑93 (MQ=255)
cccACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTaa < 1:1680430/93‑1 (MQ=255)
|
GCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCGCCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAA > NC_000913/723864‑724043
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCGCCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATGC > NC_000913/723861‑724046
|
CGCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCA > SRR4302533.4989236/1‑94 (MQ=60)
GCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCAC > SRR4302533.893699/1‑94 (MQ=60)
GCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCAC > SRR4302533.523723/1‑94 (MQ=60)
GCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCAC < SRR4302533.2447679/94‑1 (MQ=60)
CGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACC < SRR4302533.2237276/94‑1 (MQ=60)
CGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACC > SRR4302533.1974880/1‑94 (MQ=60)
GCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCA > SRR4302533.112557/1‑94 (MQ=60)
CTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAG < SRR4302533.1186035/94‑1 (MQ=60)
CTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAG < SRR4302533.4949702/94‑1 (MQ=60)
CTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAG > SRR4302533.1463463/1‑94 (MQ=60)
TGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGA > SRR4302533.6327243/1‑94 (MQ=60)
TGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGA < SRR4302533.670810/94‑1 (MQ=60)
GGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAA < SRR4302533.1606354/94‑1 (MQ=60)
GCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAG > SRR4302533.6006231/1‑94 (MQ=60)
GCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAG > SRR4302533.3444841/1‑94 (MQ=60)
GCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAG < SRR4302533.5241952/94‑1 (MQ=60)
CATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGC > SRR4302533.766378/1‑94 (MQ=60)
ATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCC > SRR4302533.4952596/1‑94 (MQ=60)
ATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCC < SRR4302533.4820014/94‑1 (MQ=60)
TCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCT < SRR4302533.2863711/94‑1 (MQ=60)
CCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCCCCAGAAGCCTG < SRR4302533.424966/94‑1 (MQ=60)
CCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTG > SRR4302533.854144/1‑94 (MQ=60)
CCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTG > SRR4302533.3631284/1‑94 (MQ=60)
CGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGT > SRR4302533.6275218/1‑94 (MQ=60)
GGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGG > SRR4302533.263799/1‑94 (MQ=60)
GTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGA < SRR4302533.164844/94‑1 (MQ=60)
TTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGAT < SRR4302533.168830/94‑1 (MQ=60)
CGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATA > SRR4302533.2983116/1‑94 (MQ=60)
CGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATA > SRR4302533.3090734/1‑94 (MQ=60)
CGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATA < SRR4302533.2079210/94‑1 (MQ=60)
GGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAG < SRR4302533.4382277/94‑1 (MQ=60)
GCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGG > SRR4302533.160313/1‑94 (MQ=60)
CCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGG > SRR4302533.2222560/1‑94 (MQ=60)
GTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCAT < SRR4302533.1130792/94‑1 (MQ=60)
AATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTT < SRR4302533.761105/94‑1 (MQ=60)
TGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCT < SRR4302533.694027/94‑1 (MQ=60)
tgAGCAACGCGTGCGGGTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTG < SRR4302533.1701860/92‑1 (MQ=60)
CAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGC > SRR4302533.3193709/1‑94 (MQ=60)
AGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGCAGCCTGTGGATTATAGGGCATTTCTGCC > SRR4302533.5328231/1‑94 (MQ=60)
AGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCC > SRR4302533.1920160/1‑94 (MQ=60)
GCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCG < SRR4302533.146100/94‑1 (MQ=60)
GCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCG > SRR4302533.4383367/1‑94 (MQ=60)
CAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGT > SRR4302533.3349815/1‑94 (MQ=60)
CAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGT > SRR4302533.410943/1‑94 (MQ=60)
CAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGT > SRR4302533.5166574/1‑94 (MQ=60)
CAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGT > SRR4302533.735422/1‑94 (MQ=60)
AACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTT > SRR4302533.2743052/1‑94 (MQ=60)
AACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTT > SRR4302533.6012173/1‑94 (MQ=60)
AACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTT > SRR4302533.6164292/1‑94 (MQ=60)
ACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTG < SRR4302533.385386/94‑1 (MQ=60)
CGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGC > SRR4302533.2253094/1‑94 (MQ=60)
CGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGC > SRR4302533.1957630/1‑94 (MQ=60)
GCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCC < SRR4302533.6081479/94‑1 (MQ=60)
CGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCG > SRR4302533.5928376/1‑94 (MQ=60)
GTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGA > SRR4302533.4823421/1‑94 (MQ=60)
GTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGA > SRR4302533.1779944/1‑94 (MQ=60)
TGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGAC < SRR4302533.3793738/94‑1 (MQ=60)
GCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACG < SRR4302533.1595448/94‑1 (MQ=60)
CGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGG > SRR4302533.921049/1‑94 (MQ=60)
CGCCTATTAGTTTATCCAGCTCAGGGTTGCTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGG < SRR4302533.5217048/94‑1 (MQ=60)
GCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGC > SRR4302533.4650306/1‑94 (MQ=60)
GCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGC > SRR4302533.798940/1‑94 (MQ=60)
CTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCG < SRR4302533.1851434/94‑1 (MQ=60)
CTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCG < SRR4302533.4530480/94‑1 (MQ=60)
CTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCG > SRR4302533.1644501/1‑94 (MQ=60)
TTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACC > SRR4302533.2373405/1‑94 (MQ=60)
GTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATG < SRR4302533.4041306/94‑1 (MQ=60)
TTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAA < SRR4302533.3421373/94‑1 (MQ=60)
TATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAA > SRR4302533.1604102/1‑94 (MQ=60)
TATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAA > SRR4302533.6322523/1‑94 (MQ=60)
TATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAA < SRR4302533.2994420/94‑1 (MQ=60)
ATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAA > SRR4302533.689279/1‑94 (MQ=60)
ATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAA > SRR4302533.2051614/1‑94 (MQ=60)
TCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAAT > SRR4302533.1463504/1‑94 (MQ=60)
CCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATA < SRR4302533.1105604/94‑1 (MQ=60)
CCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATA > SRR4302533.4017240/1‑94 (MQ=60)
CAGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAG > SRR4302533.6333461/1‑94 (MQ=60)
AGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGTCGGGCGACCATGAAAATAGC > SRR4302533.1636077/1‑94 (MQ=60)
AGCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACAATGAAAATAGC > SRR4302533.389544/1‑94 (MQ=60)
GCTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCC > SRR4302533.5668012/1‑94 (MQ=60)
CTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCG > SRR4302533.2809667/1‑94 (MQ=60)
CTCAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCG > SRR4302533.739670/1‑94 (MQ=60)
CAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTT < SRR4302533.3734722/94‑1 (MQ=60)
CAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTT < SRR4302533.1819472/94‑1 (MQ=60)
CAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTT > SRR4302533.3062337/1‑94 (MQ=60)
CAGGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTT < SRR4302533.5386492/94‑1 (MQ=60)
GGGTTACTGCCCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGC < SRR4302533.1878773/94‑1 (MQ=60)
GGGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGGCCATGAAAATAGCCGTTGC < SRR4302533.2185244/94‑1 (MQ=60)
GGTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCC > SRR4302533.2293550/1‑94 (MQ=60)
GTTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCG < SRR4302533.2102344/94‑1 (MQ=60)
TTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGG < SRR4302533.6332048/94‑1 (MQ=60)
TTACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGG > SRR4302533.3805281/1‑94 (MQ=60)
TACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATGGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGT < SRR4302533.5434018/94‑1 (MQ=60)
TACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGT < SRR4302533.913018/94‑1 (MQ=60)
ACTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTA > SRR4302533.6196100/1‑94 (MQ=60)
CTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAA > SRR4302533.797843/1‑94 (MQ=60)
CTGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAA > SRR4302533.5463542/1‑94 (MQ=60)
TGACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAA > SRR4302533.2207555/1‑94 (MQ=60)
GACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAA > SRR4302533.4321961/1‑94 (MQ=60)
GACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAA > SRR4302533.15842/1‑94 (MQ=60)
ACCGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAAT < SRR4302533.6327723/94‑1 (MQ=60)
CGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTC > SRR4302533.6018770/1‑94 (MQ=60)
CGCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTC < SRR4302533.4994898/94‑1 (MQ=60)
GCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCT > SRR4302533.4502940/1‑94 (MQ=60)
GCCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCACGAAAATAGCCGTTGCCGGTAAAATTCT > SRR4302533.6236920/1‑94 (MQ=60)
CCAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTG < SRR4302533.5038296/94‑1 (MQ=60)
CAGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGC > SRR4302533.1891076/1‑94 (MQ=60)
AGATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCC < SRR4302533.6177003/94‑1 (MQ=60)
ATTGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCG > SRR4302533.2461183/1‑94 (MQ=60)
TGCTCCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGAT < SRR4302533.4727/94‑1 (MQ=60)
CCCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAAT < SRR4302533.1690611/94‑1 (MQ=60)
CCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATG > SRR4302533.4411063/1‑94 (MQ=60)
CCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATG < SRR4302533.3479012/94‑1 (MQ=60)
CCACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATG < SRR4302533.5419772/94‑1 (MQ=60)
CACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATGC > SRR4302533.3846405/1‑94 (MQ=60)
CACCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATGC > SRR4302533.284548/1‑94 (MQ=60)
|
CGCGCTGGCATCCGGGTTAGCGGCCCGTAATGCAGCAACGCGTGCGGCTATTAGTTTATCCAGCTCAGGGTTACTGACCGCCAGATTGCTCCCGCCAGAAGCCTGTGGATTATAGGGCATTTCTGCCGTTGCCGACGGGCGACCATGAAAATAGCCGTTGCCGGTAAAATTCTGCCCGATTAATGC > NC_000913/723861‑724046
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
