Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
736,618 |
T→C |
Y98H (TAT→CAT) |
ybfL → |
putative receptor protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 736,618 | 0 | T | C | 100.0%
| 559.6
/ NA
| 196 | Y98H (TAT→CAT) | ybfL | putative receptor protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (85/111); total (85/111) |
Only 100 of 196 total aligned reads displayed.
ATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAT > NC_000913/736537‑736707
|
atTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCt > 2:1948159/1‑93 (MQ=14)
ttAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTg > 2:6124115/1‑93 (MQ=17)
ttAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTg > 1:5679595/1‑93 (MQ=17)
ttAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTg < 1:3953826/93‑1 (MQ=17)
ttAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTg < 2:5621589/93‑1 (MQ=17)
tAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGt < 1:1142237/93‑1 (MQ=18)
tAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGt < 2:5177857/93‑1 (MQ=18)
aaaGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTa < 1:5289894/93‑1 (MQ=18)
aaaGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTa > 2:3712030/1‑93 (MQ=18)
aaaGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTa < 2:5806608/93‑1 (MQ=18)
aaGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTaa > 1:3758949/1‑93 (MQ=18)
aGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTaaa > 2:2384468/1‑93 (MQ=18)
ggAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTaaaa > 2:3604330/1‑93 (MQ=18)
aaaaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAgg < 1:669183/93‑1 (MQ=21)
aaaaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAgg < 1:1569033/93‑1 (MQ=21)
aaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaa > 1:4291479/1‑93 (MQ=18)
aaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaa > 2:1508778/1‑93 (MQ=18)
aaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaa < 2:3039995/93‑1 (MQ=18)
aaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaa < 1:3653922/93‑1 (MQ=21)
aaaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaa > 1:379345/1‑93 (MQ=18)
aaTCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGaaa > 2:2912093/1‑93 (MQ=18)
atcatcACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAAc < 1:2803217/93‑1 (MQ=21)
atcatcACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAAc < 1:1911324/93‑1 (MQ=18)
tcatcaCAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAAcc > 2:3929175/1‑93 (MQ=18)
tcatcaCAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAAcc > 1:2145310/1‑93 (MQ=18)
catcaCAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCa < 2:2314991/93‑1 (MQ=21)
tcaCAACTGATGCGATGGGTTGTCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAgg < 1:5010212/93‑1 (MQ=255)
tcaCAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAgg > 1:3558504/1‑93 (MQ=18)
cacaACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAggg < 1:5812259/93‑1 (MQ=21)
cacaACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAggg < 2:4555064/93‑1 (MQ=21)
aaCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcg < 1:4017922/93‑1 (MQ=18)
aaCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcg < 1:3520283/93‑1 (MQ=18)
aaCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcg > 2:4034877/1‑93 (MQ=18)
aCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcgg > 2:542826/1‑93 (MQ=18)
aCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcgg > 2:5995947/1‑93 (MQ=18)
aCTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcgg > 1:3975197/1‑93 (MQ=18)
cTGATGCGATGGGTTGCCAGAAAGATATTGCGGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcggc < 2:5569130/93‑1 (MQ=12)
cTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcggc > 2:4973675/1‑93 (MQ=17)
cTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGggcggc > 2:947471/1‑93 (MQ=17)
tGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaa < 1:5441206/93‑1 (MQ=18)
tGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaa > 1:5185346/1‑93 (MQ=18)
tGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaa < 1:2816079/93‑1 (MQ=18)
gATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaataa > 2:4776235/1‑93 (MQ=18)
gATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaataa < 2:3364951/93‑1 (MQ=21)
gATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTtaataa < 2:5690398/93‑1 (MQ=18)
aTGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATaaa < 2:2562757/93‑1 (MQ=21)
tGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAg > 1:555219/1‑93 (MQ=18)
gggTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGc < 2:5885054/93‑1 (MQ=21)
ggTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGcc < 1:1443167/93‑1 (MQ=21)
gTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCt < 1:2119147/93‑1 (MQ=21)
ttGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCtt < 1:3438464/93‑1 (MQ=21)
ttGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCtt < 2:1596781/93‑1 (MQ=21)
gCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTg < 1:3182311/93‑1 (MQ=255)
ccAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGa > 1:4517243/1‑93 (MQ=255)
ccAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGa < 2:2020589/93‑1 (MQ=255)
cAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAg < 1:1271757/93‑1 (MQ=255)
aGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAgg > 1:2936290/1‑93 (MQ=255)
aaaGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGaa > 1:5848869/1‑93 (MQ=255)
aGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGaaaa > 2:1880567/1‑93 (MQ=37)
gATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGaaaaa > 2:4616621/1‑93 (MQ=37)
gATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGaaaaa < 1:2230456/93‑1 (MQ=255)
gATATTGCAGAGAAGATACAAAAACAGGGAGGGGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGaaaaa > 1:3454791/1‑93 (MQ=255)
atatTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAt > 2:2740118/1‑93 (MQ=255)
atatTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAt < 1:650803/93‑1 (MQ=255)
atatTGCAGAGAAGATACAAAAACAGGGAGGGGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAt > 1:3815121/1‑93 (MQ=255)
tatTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAtt > 2:5367073/1‑93 (MQ=255)
ttGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTc < 1:943803/93‑1 (MQ=255)
ttGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTc > 2:698845/1‑93 (MQ=255)
tGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTcc < 2:4425641/93‑1 (MQ=37)
tGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTcc < 1:2434227/93‑1 (MQ=37)
gaagaTACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGaa > 2:5293404/1‑93 (MQ=255)
agagACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAg < 2:3491835/93‑1 (MQ=255)
agaTACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAg > 2:2935965/1‑93 (MQ=37)
gaTACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGa < 2:3183720/93‑1 (MQ=37)
gaTACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGa < 1:3170/93‑1 (MQ=255)
gaTACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGa > 1:5736500/1‑93 (MQ=255)
tACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAt < 1:4710073/93‑1 (MQ=255)
tACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAt > 1:3018858/1‑93 (MQ=37)
tACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAt > 2:2485624/1‑93 (MQ=255)
aCAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAtt > 1:2076834/1‑93 (MQ=255)
aCAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAtt < 2:4700119/93‑1 (MQ=255)
cAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTa < 2:1258307/93‑1 (MQ=37)
aaaaaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTaa < 1:6244825/93‑1 (MQ=37)
aaaaaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTaa < 2:4470013/93‑1 (MQ=255)
aaaaaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTaa > 2:3685773/1‑93 (MQ=37)
aaaaaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTaa < 1:2387179/93‑1 (MQ=255)
aaaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaat < 2:5477219/93‑1 (MQ=255)
aaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaata > 1:1139061/1‑93 (MQ=255)
aaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaata < 1:3937448/93‑1 (MQ=37)
aaCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaata > 1:981047/1‑93 (MQ=255)
aCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGCAAGAATTAaataa > 2:3098976/1‑93 (MQ=255)
aCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaataa < 2:3295315/93‑1 (MQ=37)
aCAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaataa < 1:6053186/93‑1 (MQ=255)
cAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAaataat < 2:1864809/93‑1 (MQ=37)
gggAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATcc < 1:2738838/93‑1 (MQ=255)
aGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCaga < 2:3535908/93‑1 (MQ=255)
gATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAt > 1:4108547/1‑93 (MQ=255)
gATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAt < 2:1646965/93‑1 (MQ=255)
gATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAt < 1:4949112/93‑1 (MQ=255)
gATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAt > 1:5474420/1‑93 (MQ=255)
|
ATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAT > NC_000913/736537‑736707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGA > NC_000913/736525‑736709
|
AACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATC > SRR4302533.6176824/1‑94 (MQ=0)
CATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCAT < SRR4302533.4997181/94‑1 (MQ=0)
CATGCTGGATATGAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCAT < SRR4302533.1359858/94‑1 (MQ=0)
ATGCTGGATATTAAGGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATT < SRR4302533.5619364/94‑1 (MQ=0)
ATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATT < SRR4302533.356008/94‑1 (MQ=0)
ATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATT > SRR4302533.5110623/1‑94 (MQ=0)
ATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATT < SRR4302533.4417649/94‑1 (MQ=0)
ATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATT > SRR4302533.4132719/1‑94 (MQ=0)
CTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTAT > SRR4302533.1410316/1‑94 (MQ=0)
CTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTAT > SRR4302533.5140664/1‑94 (MQ=0)
TGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATT < SRR4302533.167552/94‑1 (MQ=0)
GGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTC < SRR4302533.3849511/94‑1 (MQ=0)
GATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCG < SRR4302533.2843614/94‑1 (MQ=0)
GATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCG < SRR4302533.1909929/94‑1 (MQ=0)
ATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGC > SRR4302533.1752905/1‑94 (MQ=0)
TATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCT < SRR4302533.6137400/94‑1 (MQ=0)
ATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTG > SRR4302533.5713897/1‑94 (MQ=0)
TTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGT < SRR4302533.3977933/94‑1 (MQ=3)
TAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTA < SRR4302533.1149045/94‑1 (MQ=5)
AAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAA > SRR4302533.3781992/1‑94 (MQ=8)
AAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAA > SRR4302533.3791516/1‑94 (MQ=8)
AAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAA < SRR4302533.5321572/94‑1 (MQ=8)
AAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAA > SRR4302533.4898414/1‑94 (MQ=8)
AGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAA > SRR4302533.3965673/1‑94 (MQ=8)
GGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAG < SRR4302533.5774738/94‑1 (MQ=8)
GAAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAG < SRR4302533.5757971/94‑1 (MQ=7)
GAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGG < SRR4302533.3547082/94‑1 (MQ=8)
AAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGA < SRR4302533.673135/94‑1 (MQ=8)
AAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGA < SRR4302533.1578481/94‑1 (MQ=8)
AAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGA < SRR4302533.55535/94‑1 (MQ=8)
AAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAA > SRR4302533.4317287/1‑94 (MQ=8)
AAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAA > SRR4302533.381631/1‑94 (MQ=8)
AAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAA > SRR4302533.2806095/1‑94 (MQ=8)
AAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAA < SRR4302533.3676387/94‑1 (MQ=8)
ATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACC < SRR4302533.2820468/94‑1 (MQ=10)
ATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACC > SRR4302533.2158523/1‑94 (MQ=10)
ATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACC < SRR4302533.1922987/94‑1 (MQ=10)
CATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAG < SRR4302533.3948177/94‑1 (MQ=10)
ATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGG > SRR4302533.3580432/1‑94 (MQ=10)
TCACAACTGATGCGATGGGTTGTCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGG < SRR4302533.5040566/94‑1 (MQ=9)
CACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGG < SRR4302533.1387438/94‑1 (MQ=8)
CACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGG < SRR4302533.4473532/94‑1 (MQ=8)
CACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGG < SRR4302533.5847362/94‑1 (MQ=8)
ACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGC < SRR4302533.3591977/94‑1 (MQ=8)
CAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCG > SRR4302533.3986699/1‑94 (MQ=8)
CAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCG > SRR4302533.2194174/1‑94 (MQ=8)
AACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGG < SRR4302533.3541985/94‑1 (MQ=5)
AACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGG > SRR4302533.3999398/1‑94 (MQ=5)
AACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGG < SRR4302533.4042384/94‑1 (MQ=5)
CTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCT > SRR4302533.2587200/1‑94 (MQ=0)
TGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTT > SRR4302533.4003024/1‑94 (MQ=0)
ATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAA > SRR4302533.5216645/1‑94 (MQ=5)
ATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAA > SRR4302533.6016029/1‑94 (MQ=5)
TGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAAT < SRR4302533.2833416/94‑1 (MQ=7)
TGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAAT < SRR4302533.5473977/94‑1 (MQ=7)
GCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATA < SRR4302533.5487462/94‑1 (MQ=10)
GCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATA < SRR4302533.4725454/94‑1 (MQ=10)
GATGAGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAA < SRR4302533.3525487/94‑1 (MQ=9)
ATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAG > SRR4302533.558510/1‑94 (MQ=10)
GGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCC < SRR4302533.243290/94‑1 (MQ=10)
GGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCT < SRR4302533.1451873/94‑1 (MQ=10)
GTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTT < SRR4302533.2132219/94‑1 (MQ=10)
GTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTT < SRR4302533.5052066/94‑1 (MQ=10)
TTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTT < SRR4302533.3459699/94‑1 (MQ=12)
TTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTT < SRR4302533.5649643/94‑1 (MQ=12)
TTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTT < SRR4302533.3459700/94‑1 (MQ=12)
TGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTG > SRR4302533.2250020/1‑94 (MQ=15)
GCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGA < SRR4302533.3201889/94‑1 (MQ=20)
GCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGA > SRR4302533.4544598/1‑94 (MQ=20)
CCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAG > SRR4302533.5282418/1‑94 (MQ=23)
CAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGG > SRR4302533.2954242/1‑94 (MQ=25)
CAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGG < SRR4302533.1279364/94‑1 (MQ=25)
AGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGA > SRR4302533.586100/1‑94 (MQ=25)
GAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAA > SRR4302533.5884230/1‑94 (MQ=25)
AAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAA < SRR4302533.1158370/94‑1 (MQ=25)
AGATATTGCAGAGAAGATACAAAAACAGGGAGGGGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAA > SRR4302533.3476116/1‑94 (MQ=24)
GATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAT < SRR4302533.3008663/94‑1 (MQ=25)
GATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAT < SRR4302533.2244220/94‑1 (MQ=25)
GATATTGCAGAGAAGATACAAAAACAGGGAGGGGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAAT > SRR4302533.3838450/1‑94 (MQ=24)
ATATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATT < SRR4302533.654651/94‑1 (MQ=25)
TATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTT < SRR4302533.86825/94‑1 (MQ=25)
TATTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCCCTGTAAAAGGAAACAAGGGGCGGGTTAATAAACCCTTTGAGAAAAAATTC > SRR4302533.1955358/1‑94 (MQ=20)
TTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCC < SRR4302533.2830214/94‑1 (MQ=25)
TTGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCC < SRR4302533.949352/94‑1 (MQ=25)
TTGCAGAGAAGATACAAAAACACGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCC < SRR4302533.6145701/94‑1 (MQ=24)
TGCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCG < SRR4302533.2449264/94‑1 (MQ=25)
GCAGAGAAGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGC < SRR4302533.4985963/94‑1 (MQ=25)
CAGAGAAGATACAAAAACAGGGAGGCGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCAGCT > SRR4302533.3190803/1‑94 (MQ=23)
AGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGA < SRR4302533.3041813/94‑1 (MQ=25)
AGATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGA > SRR4302533.5771123/1‑94 (MQ=25)
GATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAA < SRR4302533.3195/94‑1 (MQ=25)
ATACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAT > SRR4302533.3037339/1‑94 (MQ=25)
TACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATT > SRR4302533.2089616/1‑94 (MQ=25)
TACAAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATT < SRR4302533.4738620/94‑1 (MQ=25)
AAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAA < SRR4302533.6282205/94‑1 (MQ=25)
AAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAA > SRR4302533.5453395/1‑94 (MQ=25)
AAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAA < SRR4302533.4315936/94‑1 (MQ=25)
AAAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAA < SRR4302533.2401928/94‑1 (MQ=25)
AAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAAT > SRR4302533.67027/1‑94 (MQ=25)
AAAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAAT > SRR4302533.2134722/1‑94 (MQ=25)
AAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATA > SRR4302533.986799/1‑94 (MQ=25)
AAACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATA > SRR4302533.1145838/1‑94 (MQ=25)
AACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAA < SRR4302533.2111622/94‑1 (MQ=25)
AACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAA < SRR4302533.645505/94‑1 (MQ=25)
AACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAA < SRR4302533.3961483/94‑1 (MQ=25)
ACAGGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAAT < SRR4302533.6089847/94‑1 (MQ=25)
GGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCA < SRR4302533.2755632/94‑1 (MQ=25)
GGGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCATTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCA < SRR4302533.4057992/94‑1 (MQ=26)
GGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAG > SRR4302533.1637198/1‑94 (MQ=25)
GGAGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGAGGCTTAATAAAGCCTTTGAGGAACAATTTCCGCTGAAAGAATTAAATAATCCAG > SRR4302533.1474329/1‑94 (MQ=28)
AGGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAG < SRR4302533.2943172/94‑1 (MQ=38)
GGTGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGACTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGC > SRR4302533.3269410/1‑94 (MQ=31)
TGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAT > SRR4302533.5507418/1‑94 (MQ=38)
TGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAT < SRR4302533.3769459/94‑1 (MQ=38)
TGATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCAT > SRR4302533.4133526/1‑94 (MQ=38)
GATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATG < SRR4302533.4979083/94‑1 (MQ=38)
ATCATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGA > SRR4302533.249561/1‑94 (MQ=38)
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AACATGCTGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGTTGCCAGAAAGATATTGCAGAGAAGATACAAAAACAGGGAGGTGATTATTTATTCGCTGTAAAAGGAAACCAGGGGCGGCTTAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATCCAGAGCATGA > NC_000913/736525‑736709
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
