Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	808,437	T→C	H15R (CAC→CGC)	bioA ←	7,8‑diaminopelargonic acid synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	808,437	0	T	C	100.0%	790.1 / NA	247	H15R (CAC→CGC)	bioA	7,8‑diaminopelargonic acid synthetase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/140); total (107/140)

Only 100 of 252 total aligned reads displayed.

AGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGTGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTA  >  NC_000913/808347‑808526

aGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGgcgc                                                                                         >  1:53628/1‑93 (MQ=255)

aGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGgcgc                                                                                         <  2:407331/93‑1 (MQ=255)

aGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGgcgc                                                                                         >  1:3388969/1‑93 (MQ=255)

 ggCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGcc                                                                                        <  2:2439604/93‑1 (MQ=255)

 ggCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGcc                                                                                        <  1:2629568/93‑1 (MQ=255)

  gCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCa                                                                                       <  2:3008041/93‑1 (MQ=255)

  gCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCa                                                                                       <  2:5672956/93‑1 (MQ=255)

  gCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCa                                                                                       <  1:2350283/93‑1 (MQ=255)

    ctCTGCCGTCAGACAAAATCAGCGCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGa                                                                                     <  1:369337/92‑1 (MQ=255)

     tCTGCCGTCAGACAAACTCAGCTCGCAACCTTCGGCGCTCTCCACCGGATACACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGat                                                                                    <  2:1347371/93‑1 (MQ=255)

     tCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGat                                                                                    <  2:3331063/93‑1 (MQ=255)

     tCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGat                                                                                    >  2:5994227/1‑93 (MQ=255)

        gCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATg                                                                                 <  1:5960457/93‑1 (MQ=255)

        gCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATg                                                                                 >  1:1182596/1‑93 (MQ=255)

         ccGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATgg                                                                                >  1:574070/1‑93 (MQ=255)

         ccGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATgg                                                                                >  1:13284/1‑93 (MQ=255)

          cGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGc                                                                               >  1:5231788/1‑93 (MQ=255)

          cGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGc                                                                               >  1:1851907/1‑93 (MQ=255)

           gTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCg                                                                              <  2:3954426/93‑1 (MQ=255)

            tCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGt                                                                             >  2:4970973/1‑93 (MQ=255)

              aGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTg                                                                           >  1:203565/1‑93 (MQ=255)

              aGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTg                                                                           >  1:4475813/1‑93 (MQ=255)

               gACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTgg                                                                          <  2:5604276/93‑1 (MQ=255)

                aCAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGt                                                                         >  2:3399757/1‑93 (MQ=255)

                 cAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTc                                                                        >  2:4218732/1‑93 (MQ=255)

                  aaaaTCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCa                                                                       >  1:3310562/1‑93 (MQ=255)

                     aTCAGCTCGCAACCTTCGGCGCTCTCCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAg                                                                    <  2:6183168/93‑1 (MQ=255)

                         gCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCaa                                                                >  2:1456838/1‑93 (MQ=255)

                         gCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCaa                                                                >  2:5104297/1‑93 (MQ=255)

                         gCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCaa                                                                <  2:552063/93‑1 (MQ=255)

                         gCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCaa                                                                <  2:4637273/93‑1 (MQ=255)

                          cTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAg                                                               <  2:5894888/93‑1 (MQ=255)

                           tCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGa                                                              <  1:5873677/93‑1 (MQ=255)

                           tCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGa                                                              <  1:5978458/93‑1 (MQ=255)

                           tCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGa                                                              <  1:3565945/93‑1 (MQ=255)

                           tCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGa                                                              <  2:401162/93‑1 (MQ=255)

                            cGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAt                                                             <  1:455100/93‑1 (MQ=255)

                            cGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAt                                                             >  2:2448693/1‑93 (MQ=255)

                             gCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATc                                                            >  1:1000091/1‑93 (MQ=255)

                              cAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCg                                                           <  2:437105/93‑1 (MQ=255)

                               aaCCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGt                                                          <  1:1935761/93‑1 (MQ=255)

                                aCCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTc                                                         <  1:1376885/93‑1 (MQ=255)

                                 ccTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTcc                                                        <  1:342906/93‑1 (MQ=255)

                                   ttCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGt                                                      <  1:4888492/93‑1 (MQ=255)

                                   ttCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGt                                                      <  2:3871059/93‑1 (MQ=255)

                                    tCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGtt                                                     <  1:3104141/93‑1 (MQ=255)

                                      ggCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGt                                                   <  2:3790550/93‑1 (MQ=255)

                                       gcgcTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCCGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTc                                                  >  1:642684/1‑93 (MQ=255)

                                         gcTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTGAAAGGCAAGATCGGCCGTTGTCAt                                                >  1:1689007/1‑93 (MQ=255)

                                         gcTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCAt                                                <  1:2231221/93‑1 (MQ=255)

                                         gcTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGAATGGGCGCCAGATATGGCGCTGGTCAAAGGCAAGATCGTCCGTTGTCaa                                                >  2:5658882/1‑92 (MQ=255)

                                           tCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATaa                                              >  1:987208/1‑93 (MQ=255)

                                            caccacCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAAt                                             <  1:5098264/93‑1 (MQ=255)

                                            caccacCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAAt                                             <  2:1502744/93‑1 (MQ=255)

                                            caccacCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAAt                                             <  1:3987055/93‑1 (MQ=255)

                                              ccaccGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCg                                           >  2:3093415/1‑93 (MQ=255)

                                              ccaccGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCg                                           >  2:3689319/1‑93 (MQ=255)

                                               caccGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGa                                          <  1:5642750/93‑1 (MQ=255)

                                                accGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGAc                                         <  1:4343010/93‑1 (MQ=255)

                                                accGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGAc                                         >  1:1568150/1‑93 (MQ=255)

                                                   ggATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTg                                      <  1:3195605/93‑1 (MQ=255)

                                                   ggATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTg                                      <  2:5714992/93‑1 (MQ=255)

                                                   ggATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTg                                      >  1:4635112/1‑93 (MQ=255)

                                                    gATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCTGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGt                                     <  1:279916/93‑1 (MQ=255)

                                                     aTAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTa                                    >  1:4813429/1‑93 (MQ=255)

                                                     aTAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTa                                    <  2:6227738/93‑1 (MQ=255)

                                                       aaaCCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTaaa                                  <  2:5211685/93‑1 (MQ=255)

                                                         aCCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAAcc                                <  2:298545/93‑1 (MQ=255)

                                                         aCCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAAcc                                <  1:5319117/93‑1 (MQ=255)

                                                           cGGCAGAGGGGAGGTCATGGATGTNTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCaa                              <  2:247784/93‑1 (MQ=255)

                                                             gCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAAt                            >  2:4568810/1‑93 (MQ=255)

                                                              cAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAAtt                           >  1:1079413/1‑93 (MQ=255)

                                                                   gggAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGaaaa                      <  2:779285/93‑1 (MQ=255)

                                                                   gggAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGaaaa                      <  1:4762283/93‑1 (MQ=255)

                                                                   gggAAGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTGGTCATAATCGACTTGTAAACCAAATTGaaaa                      <  2:1992754/93‑1 (MQ=255)

                                                                    ggAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAg                     >  1:3906081/1‑93 (MQ=255)

                                                                      aGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTTGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTGAACCAAATTGAAAAGAt                   <  2:875448/93‑1 (MQ=255)

                                                                      aGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGAt                   >  1:3867409/1‑93 (MQ=255)

                                                                      aGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGAt                   <  1:2975734/93‑1 (MQ=255)

                                                                        gTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAGAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGAttt                 <  2:1558614/93‑1 (MQ=255)

                                                                         tCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTa                <  1:2459062/93‑1 (MQ=255)

                                                                          cATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAg               >  1:6165398/1‑93 (MQ=255)

                                                                           aTGGATGTGTATGGGCGCCAGATATGGCGTTGTTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAgg              <  1:5832614/93‑1 (MQ=255)

                                                                           aTGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAgg              <  2:1087478/93‑1 (MQ=255)

                                                                           aTGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAgg              >  1:285169/1‑93 (MQ=255)

                                                                           aTGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAgg              <  2:4927236/93‑1 (MQ=255)

                                                                            tGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGt             <  1:742162/93‑1 (MQ=255)

                                                                             ggATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGtt            >  1:3529011/1‑93 (MQ=255)

                                                                             ggATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGtt            >  2:709868/1‑93 (MQ=255)

                                                                              gATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGttt           >  1:5518214/1‑93 (MQ=255)

                                                                              gATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGttt           >  2:256134/1‑93 (MQ=255)

                                                                               aTGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTa          <  2:3076697/93‑1 (MQ=255)

                                                                                tgtgTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTAc         <  1:2870056/93‑1 (MQ=255)

                                                                                tgtgTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTAc         >  1:868786/1‑93 (MQ=255)

                                                                                tgtgTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTAc         <  1:2270281/93‑1 (MQ=255)

                                                                                  tgtATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACaa       <  1:5756659/93‑1 (MQ=255)

                                                                                   gtATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAg      >  2:3580400/1‑93 (MQ=255)

                                                                                     aTGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTc    >  2:6041537/1‑93 (MQ=255)

                                                                                     aTGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTc    <  2:1800908/93‑1 (MQ=255)

                                                                                       gggCGCCAGATATGGCGTTGGTAAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTa  <  2:1156470/93‑1 (MQ=255)

AGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGTGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTA  >  NC_000913/808347‑808526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCAGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGTGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  >  NC_000913/808345‑808530

CCAGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCG                                                                                              >  SRR4302533.1767581/1‑94 (MQ=60)

 CAGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGC                                                                                             >  SRR4302533.3409897/1‑94 (MQ=60)

 CAGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGC                                                                                             >  SRR4302533.53991/1‑94 (MQ=60)

   GGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCA                                                                                           <  SRR4302533.2645727/94‑1 (MQ=60)

   GGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCA                                                                                           >  SRR4302533.5033310/1‑94 (MQ=60)

    GCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAG                                                                                          <  SRR4302533.3559971/94‑1 (MQ=60)

    GCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAG                                                                                          <  SRR4302533.2364821/94‑1 (MQ=60)

    GCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAG                                                                                          <  SRR4302533.3371474/94‑1 (MQ=60)

      GTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGAT                                                                                        >  SRR4302533.249076/1‑94 (MQ=60)

      CTCTGCCGTCAGACAAAATCAGCGCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGAT                                                                                        <  SRR4302533.371567/94‑1 (MQ=60)

       TCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATA                                                                                       <  SRR4302533.601759/94‑1 (MQ=60)

         TGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATG                                                                                     <  SRR4302533.1789191/94‑1 (MQ=60)

         TGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATG                                                                                     >  SRR4302533.1189698/1‑94 (MQ=60)

          GCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGG                                                                                    >  SRR4302533.13385/1‑94 (MQ=60)

          GCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGG                                                                                    <  SRR4302533.5996516/94‑1 (MQ=60)

          GCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGG                                                                                    >  SRR4302533.577457/1‑94 (MQ=60)

          GCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGG                                                                                    <  SRR4302533.5996517/94‑1 (MQ=60)

           CCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGC                                                                                   >  SRR4302533.1863199/1‑94 (MQ=60)

           CCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGC                                                                                   >  SRR4302533.5263254/1‑94 (MQ=60)

            CGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCG                                                                                  >  SRR4302533.1166564/1‑94 (MQ=60)

             GTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGT                                                                                 >  SRR4302533.1009632/1‑94 (MQ=60)

              TCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTT                                                                                >  SRR4302533.2358415/1‑94 (MQ=60)

              TCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTT                                                                                >  SRR4302533.3586845/1‑94 (MQ=60)

               CAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTG                                                                               <  SRR4302533.5784482/94‑1 (MQ=60)

               CAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTG                                                                               >  SRR4302533.4502876/1‑94 (MQ=60)

               CAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTG                                                                               >  SRR4302533.204861/1‑94 (MQ=60)

                AGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGG                                                                              >  SRR4302533.1343054/1‑94 (MQ=60)

                 GACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGT                                                                             <  SRR4302533.1233313/94‑1 (MQ=60)

                  ACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTC                                                                            >  SRR4302533.1489329/1‑94 (MQ=60)

                   CAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCA                                                                           >  SRR4302533.3331004/1‑94 (MQ=60)

                     AAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAA                                                                         >  SRR4302533.3698223/1‑94 (MQ=60)

                      AATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAG                                                                        <  SRR4302533.2061881/94‑1 (MQ=60)

                      AATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAG                                                                        <  SRR4302533.4390846/94‑1 (MQ=60)

                         CAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCA                                                                     <  SRR4302533.5688803/94‑1 (MQ=60)

                           GCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAG                                                                   <  SRR4302533.283307/94‑1 (MQ=60)

                             TCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAT                                                                 <  SRR4302533.6014670/94‑1 (MQ=60)

                             TCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAT                                                                 >  SRR4302533.5901282/1‑94 (MQ=60)

                             TCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAT                                                                 <  SRR4302533.5909179/94‑1 (MQ=60)

                             TCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGAT                                                                 <  SRR4302533.3587922/94‑1 (MQ=60)

                              CGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATC                                                                >  SRR4302533.1005928/1‑94 (MQ=60)

                              CGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATC                                                                <  SRR4302533.457821/94‑1 (MQ=60)

                                CAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGT                                                              >  SRR4302533.904303/1‑94 (MQ=60)

                                 AACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTC                                                             <  SRR4302533.727063/94‑1 (MQ=60)

                                 AACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTC                                                             <  SRR4302533.1947569/94‑1 (MQ=60)

                                 AACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTC                                                             >  SRR4302533.4063120/1‑94 (MQ=60)

                                  ACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCC                                                            <  SRR4302533.5605987/94‑1 (MQ=60)

                                  ACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCC                                                            <  SRR4302533.1385169/94‑1 (MQ=60)

                                   CCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCG                                                           <  SRR4302533.345002/94‑1 (MQ=60)

                                   CCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCG                                                           >  SRR4302533.5401796/1‑94 (MQ=60)

                                   CCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCG                                                           >  SRR4302533.3334269/1‑94 (MQ=60)

                                    CTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGT                                                          >  SRR4302533.5385310/1‑94 (MQ=60)

                                     TTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTT                                                         <  SRR4302533.4918110/94‑1 (MQ=60)

                                      TCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTG                                                        <  SRR4302533.596703/94‑1 (MQ=60)

                                      TCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTG                                                        <  SRR4302533.3123224/94‑1 (MQ=60)

                                      TCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTG                                                        <  SRR4302533.6116211/94‑1 (MQ=60)

                                      TCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGACGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTG                                                        >  SRR4302533.4988348/1‑94 (MQ=60)

                                       CGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGT                                                       <  SRR4302533.3207450/94‑1 (MQ=60)

                                       CGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGT                                                       <  SRR4302533.5440041/94‑1 (MQ=60)

                                        GGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCCGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTC                                                      >  SRR4302533.646461/1‑94 (MQ=60)

                                        GGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTC                                                      <  SRR4302533.1883283/94‑1 (MQ=60)

                                        GGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTC                                                      <  SRR4302533.2947598/94‑1 (MQ=60)

                                         GCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCA                                                     <  SRR4302533.857568/94‑1 (MQ=60)

                                          CGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTGAAAGGCAAGATCGGCCGTTGTCAT                                                    >  SRR4302533.1699240/1‑94 (MQ=60)

                                          CGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCAT                                                    >  SRR4302533.4005922/1‑94 (MQ=60)

                                           GCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATA                                                   <  SRR4302533.856823/94‑1 (MQ=60)

                                           GCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATA                                                   <  SRR4302533.4632385/94‑1 (MQ=60)

                                           GCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATA                                                   <  SRR4302533.2244988/94‑1 (MQ=60)

                                           GCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATA                                                   <  SRR4302533.3920045/94‑1 (MQ=60)

                                            CTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAA                                                  >  SRR4302533.992987/1‑94 (MQ=60)

                                            CTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAA                                                  >  SRR4302533.1153882/1‑94 (MQ=60)

                                            CTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAA                                                  <  SRR4302533.138174/94‑1 (MQ=60)

                                            CTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGACAAGATCGTCCGTTGTCATAA                                                  >  SRR4302533.4827029/1‑94 (MQ=60)

                                              CACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATC                                                <  SRR4302533.3764456/94‑1 (MQ=60)

                                              CACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATC                                                <  SRR4302533.5129065/94‑1 (MQ=60)

                                              CACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATC                                                <  SRR4302533.2258068/94‑1 (MQ=60)

                                              CACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATC                                                <  SRR4302533.4011341/94‑1 (MQ=60)

                                               ACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCG                                               <  SRR4302533.1880406/94‑1 (MQ=60)

                                               ACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCG                                               <  SRR4302533.4672764/94‑1 (MQ=60)

                                                 CACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGAC                                             >  SRR4302533.1577592/1‑94 (MQ=60)

                                                 CACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGAC                                             <  SRR4302533.5676858/94‑1 (MQ=60)

                                                 CACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGAC                                             >  SRR4302533.5928977/1‑94 (MQ=60)

                                                  ACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACT                                            <  SRR4302533.4369184/94‑1 (MQ=60)

                                                   CCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTT                                           <  SRR4302533.168865/94‑1 (MQ=60)

                                                    CGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTG                                          >  SRR4302533.4663198/1‑94 (MQ=60)

                                                     GGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGT                                         <  SRR4302533.3215268/94‑1 (MQ=60)

                                                     GGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGT                                         >  SRR4302533.2336542/1‑94 (MQ=60)

                                                      GATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCTGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTA                                        <  SRR4302533.281622/94‑1 (MQ=60)

                                                      GATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTA                                        >  SRR4302533.4398629/1‑94 (MQ=60)

                                                      GATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTA                                        <  SRR4302533.2872746/94‑1 (MQ=60)

                                                      GATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTA                                        >  SRR4302533.4842601/1‑94 (MQ=60)

                                                         AAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAAC                                     <  SRR4302533.3470993/94‑1 (MQ=60)

                                                         AAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAAC                                     <  SRR4302533.5259584/94‑1 (MQ=60)

                                                         AAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAAC                                     <  SRR4302533.3142398/94‑1 (MQ=60)

                                                          AACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACC                                    >  SRR4302533.3419153/1‑94 (MQ=60)

                                                           ACCGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCA                                   <  SRR4302533.5350994/94‑1 (MQ=60)

                                                             CGGCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAA                                 <  SRR4302533.2002898/94‑1 (MQ=60)

                                                               GCAGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATT                               >  SRR4302533.1085774/1‑94 (MQ=60)

                                                                 AGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGA                             >  SRR4302533.635206/1‑94 (MQ=60)

                                                                 AGAGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGA                             >  SRR4302533.1642980/1‑94 (MQ=60)

                                                                   AGGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAA                           >  SRR4302533.5325215/1‑94 (MQ=60)

                                                                    GGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAA                          <  SRR4302533.485347/94‑1 (MQ=60)

                                                                    GGGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAA                          >  SRR4302533.3494578/1‑94 (MQ=60)

                                                                     GGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAG                         <  SRR4302533.4791168/94‑1 (MQ=60)

                                                                     GGGAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAG                         >  SRR4302533.3929941/1‑94 (MQ=60)

                                                                       GAGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGAT                       >  SRR4302533.3891015/1‑94 (MQ=60)

                                                                        AGGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATT                      <  SRR4302533.2993941/94‑1 (MQ=60)

                                                                         GGTCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTT                     <  SRR4302533.5271518/94‑1 (MQ=60)

                                                                           TCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAG                   >  SRR4302533.6202459/1‑94 (MQ=60)

                                                                           TCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAG                   <  SRR4302533.2474234/94‑1 (MQ=60)

                                                                           TCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAG                   <  SRR4302533.373407/94‑1 (MQ=60)

                                                                           TCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAG                   <  SRR4302533.2674341/94‑1 (MQ=60)

                                                                           TCATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAG                   <  SRR4302533.3984984/94‑1 (MQ=60)

                                                                            CATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGG                  <  SRR4302533.2560369/94‑1 (MQ=60)

                                                                            CATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGG                  >  SRR4302533.286911/1‑94 (MQ=60)

                                                                             ATGGATGTGTATGGGCGCCAGATATGGCGTTGTTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGT                 <  SRR4302533.5867865/94‑1 (MQ=60)

                                                                             ATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGT                 >  SRR4302533.4504870/1‑94 (MQ=60)

                                                                             ATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGT                 <  SRR4302533.5820065/94‑1 (MQ=60)

                                                                             ATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGT                 >  SRR4302533.4586964/1‑94 (MQ=60)

                                                                             ATGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGT                 >  SRR4302533.6286302/1‑94 (MQ=60)

                                                                              TGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTT                <  SRR4302533.2917090/94‑1 (MQ=60)

                                                                              TGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTT                >  SRR4302533.3550760/1‑94 (MQ=60)

                                                                              TGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTT                <  SRR4302533.746531/94‑1 (MQ=60)

                                                                              TGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTT                >  SRR4302533.2838004/1‑94 (MQ=60)

                                                                              TGGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTT                <  SRR4302533.4801817/94‑1 (MQ=60)

                                                                               GGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTT               >  SRR4302533.3027423/1‑94 (MQ=60)

                                                                               GGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTT               >  SRR4302533.5551532/1‑94 (MQ=60)

                                                                               GGATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTT               <  SRR4302533.567820/94‑1 (MQ=60)

                                                                                 ATGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTAC             >  SRR4302533.873884/1‑94 (MQ=60)

                                                                                  TGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACA            <  SRR4302533.2887716/94‑1 (MQ=60)

                                                                                  TGTGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACA            <  SRR4302533.2284328/94‑1 (MQ=60)

                                                                                    TGTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAG          <  SRR4302533.5791398/94‑1 (MQ=60)

                                                                                     GTATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGT         >  SRR4302533.5861705/1‑94 (MQ=60)

                                                                                      TATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTC        <  SRR4302533.2198714/94‑1 (MQ=60)

                                                                                      TATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTC        <  SRR4302533.2426831/94‑1 (MQ=60)

                                                                                      TATGGGCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTC        >  SRR4302533.3329606/1‑94 (MQ=60)

                                                                                           GCGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACAC   <  SRR4302533.5105178/94‑1 (MQ=60)

                                                                                            CGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  <  SRR4302533.3097640/94‑1 (MQ=60)

                                                                                            CGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  >  SRR4302533.1970445/1‑94 (MQ=60)

                                                                                            CGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  <  SRR4302533.5709603/94‑1 (MQ=60)

                                                                                            CGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  <  SRR4302533.1075606/94‑1 (MQ=60)

CCAGGCGTCTGCCGTCAGACAAAATCAGCTCGCAACCTTCGGCGCTCACCACCGGATAAACCGGCAGAGGGGAGGTCATGGATGTGTATGGGTGCCAGATATGGCGTTGGTCAAAGGCAAGATCGTCCGTTGTCATAATCGACTTGTAAACCAAATTGAAAAGATTTAGGTTTACAAGTCTACACC  >  NC_000913/808345‑808530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`