Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	857,539	T→C	D249G (GAC→GGC)	ybiU ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	857,539	0	T	C	100.0%	790.1 / NA	244	D249G (GAC→GGC)	ybiU	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/118); total (126/118)

Only 100 of 260 total aligned reads displayed.

ACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGTCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACG  >  NC_000913/857449‑857628

acgacgTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGccc                                                                                         <  1:4381416/93‑1 (MQ=255)

 cgacgTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCa                                                                                        >  2:5498057/1‑93 (MQ=255)

  gacgTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCAc                                                                                       >  2:3087029/1‑93 (MQ=255)

  gacgTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCAc                                                                                       <  1:1681265/93‑1 (MQ=255)

   acgTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCAcc                                                                                      >  2:2641933/1‑93 (MQ=255)

     gTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCgt                                                                                    >  1:1525239/1‑93 (MQ=255)

          gcagcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTAct                                                                               >  1:3430452/1‑93 (MQ=255)

           cagcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTActc                                                                              <  2:3184639/93‑1 (MQ=255)

           cagcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTActc                                                                              <  2:2297469/93‑1 (MQ=255)

            agcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTActct                                                                             >  1:4370858/1‑93 (MQ=255)

             gcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCtt                                                                            >  2:1292767/1‑93 (MQ=255)

             gcCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCtt                                                                            >  2:1558372/1‑93 (MQ=255)

              ccccTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTc                                                                           <  1:4011758/93‑1 (MQ=255)

              ccccTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCATGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTc                                                                           <  2:5522779/93‑1 (MQ=255)

                ccTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCaa                                                                         >  2:4029368/1‑93 (MQ=255)

                   gACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACtt                                                                      >  2:3813609/1‑93 (MQ=255)

                    aCCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTc                                                                     >  2:1366388/1‑93 (MQ=255)

                    aCCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTc                                                                     >  2:1186417/1‑93 (MQ=255)

                    aCCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTc                                                                     <  2:424227/93‑1 (MQ=255)

                     ccAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGCATGTCCGAAACACGGAACATTTGGTGGTGTTGGCCACCGTGTACTCTTCAACTTcc                                                                    >  2:190516/1‑93 (MQ=255)

                     ccAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTcc                                                                    <  2:4751166/93‑1 (MQ=255)

                      cAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCg                                                                   >  1:6228051/1‑93 (MQ=255)

                       aGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGt                                                                  >  1:634623/1‑93 (MQ=255)

                       aGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGt                                                                  >  2:5051596/1‑93 (MQ=255)

                       aGGCAACATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGt                                                                  <  2:444470/93‑1 (MQ=255)

                        ggCAGCATATCAGAGAGCGCTGTCCAGCCCTGAAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTa                                                                 <  1:3250471/93‑1 (MQ=255)

                         gcagcaTATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTAc                                                                <  1:2135402/93‑1 (MQ=255)

                            gcaTATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAt                                                             <  1:1155443/93‑1 (MQ=255)

                            gcaTATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAt                                                             >  2:179056/1‑93 (MQ=255)

                              atatCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAtgt                                                           <  1:4509420/93‑1 (MQ=255)

                               tatCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAtgtg                                                          >  2:6107060/1‑93 (MQ=255)

                               tatCAGAGAGCGCTGTCCAGCCCTGGAATGTCAGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAtgtg                                                          <  1:1001683/93‑1 (MQ=255)

                                 tCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGcc                                                        <  2:2704764/93‑1 (MQ=255)

                                    gagagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCa                                                     <  1:4719313/93‑1 (MQ=255)

                                    gagagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCa                                                     >  1:5419827/1‑93 (MQ=255)

                                    gagagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCa                                                     >  1:3887053/1‑93 (MQ=255)

                                     agagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCAt                                                    <  2:6079386/93‑1 (MQ=255)

                                     agagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCAt                                                    <  1:3172805/93‑1 (MQ=255)

                                     agagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCAt                                                    <  1:1323379/93‑1 (MQ=255)

                                     agagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCAt                                                    <  1:588129/93‑1 (MQ=255)

                                      gagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATg                                                   >  1:4193812/1‑93 (MQ=255)

                                      gagCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATg                                                   >  2:1662067/1‑93 (MQ=255)

                                        gcgcTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGcc                                                 <  2:1450382/93‑1 (MQ=255)

                                          gcTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAg                                               <  1:283299/93‑1 (MQ=255)

                                          gcTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAg                                               >  2:4338558/1‑93 (MQ=255)

                                           cTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAgg                                              <  1:246158/93‑1 (MQ=255)

                                            tGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAggg                                             >  1:6125791/1‑93 (MQ=255)

                                             gTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGa                                            <  1:1609019/93‑1 (MQ=255)

                                              tCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAt                                           <  2:2206352/93‑1 (MQ=255)

                                               ccAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATc                                          >  1:2958880/1‑93 (MQ=255)

                                                cAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCa                                         >  2:5624618/1‑93 (MQ=255)

                                                cAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCa                                         >  2:933242/1‑93 (MQ=255)

                                                cAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCa                                         <  1:989376/93‑1 (MQ=255)

                                                 aGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCat                                        >  2:5254823/1‑93 (MQ=255)

                                                  gCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCata                                       <  1:2231486/93‑1 (MQ=255)

                                                  gCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCata                                       <  2:2598957/93‑1 (MQ=255)

                                                  gCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGCATCata                                       >  2:3525858/1‑93 (MQ=255)

                                                     cTGGAATGGTCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTg                                    <  2:2003071/93‑1 (MQ=255)

                                                       ggAATGTCCGAAACACGGACCATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcg                                  >  2:6164899/1‑93 (MQ=255)

                                                       ggAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgtg                                  >  1:5487923/1‑91 (MQ=255)

                                                       ggAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcg                                  >  2:1937002/1‑93 (MQ=255)

                                                        gAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcgc                                 <  2:592617/93‑1 (MQ=255)

                                                        gAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcgc                                 >  2:4051888/1‑93 (MQ=255)

                                                        gAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcgc                                 >  2:5121388/1‑93 (MQ=255)

                                                        gAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTgcgc                                 <  1:1415551/93‑1 (MQ=255)

                                                         aaTGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGcc                                <  2:6298968/93‑1 (MQ=255)

                                                            gTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGa                             >  1:1788890/1‑93 (MQ=255)

                                                            gTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGa                             >  1:5316527/1‑93 (MQ=255)

                                                            gTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGa                             <  1:5558903/93‑1 (MQ=255)

                                                            gTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCACCAGa                             >  2:2547626/1‑93 (MQ=255)

                                                             tCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGAt                            <  2:3312903/93‑1 (MQ=255)

                                                              ccGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGAtt                           <  1:564394/93‑1 (MQ=255)

                                                               cGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTg                          <  1:1379551/93‑1 (MQ=255)

                                                               cGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTg                          <  2:4890203/93‑1 (MQ=255)

                                                                  aaCACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCa                       >  1:5055084/1‑93 (MQ=255)

                                                                  aaCACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCa                       <  1:1907750/93‑1 (MQ=255)

                                                                    cacGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCAtt                     <  1:3343112/93‑1 (MQ=255)

                                                                     acGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTa                    <  1:794310/93‑1 (MQ=255)

                                                                     acGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTa                    <  1:672496/93‑1 (MQ=255)

                                                                     acGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTa                    >  1:2607673/1‑93 (MQ=255)

                                                                     acGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTa                    >  1:4054683/1‑93 (MQ=255)

                                                                     acGGAACATTTGGTGGTGTCGCGCACCGTGTACTCTTCAGCTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTa                    <  1:4986904/93‑1 (MQ=255)

                                                                      cGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTaa                   <  1:4116834/93‑1 (MQ=255)

                                                                      cGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTaa                   >  2:3159814/1‑93 (MQ=255)

                                                                        gAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAg                 >  2:4130468/1‑93 (MQ=255)

                                                                        gAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAg                 >  1:435691/1‑93 (MQ=255)

                                                                        gAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAg                 >  1:3764506/1‑93 (MQ=255)

                                                                         aaCATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGa                <  2:6276651/93‑1 (MQ=255)

                                                                          aCATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGag               >  2:1416091/1‑92 (MQ=255)

                                                                             tttGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGtt            <  2:838406/93‑1 (MQ=255)

                                                                             tttGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGtt            <  1:1642659/93‑1 (MQ=255)

                                                                              ttGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTg           <  1:4571078/93‑1 (MQ=255)

                                                                              ttGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTg           <  2:294136/93‑1 (MQ=255)

                                                                               tggtggTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTgg          <  1:443363/93‑1 (MQ=255)

                                                                                ggtggtGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGc         <  1:2033913/93‑1 (MQ=255)

                                                                                  tggtgTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGa       <  1:3240030/93‑1 (MQ=255)

                                                                                     tgttgcCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGaaaa    <  2:3071672/93‑1 (MQ=255)

                                                                                     tgttgcCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGaaaa    <  1:2343338/93‑1 (MQ=255)

                                                                                     tgttgcCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGaaaa    <  2:85889/93‑1 (MQ=255)

                                                                                      gttgcCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAAc   <  2:1110250/93‑1 (MQ=255)

ACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGTCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACG  >  NC_000913/857449‑857628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGTCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGCGCT  >  NC_000913/857447‑857632

GCACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCC                                                                                              <  SRR4302533.956077/94‑1 (MQ=60)

GCACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCC                                                                                              >  SRR4302533.3446870/1‑94 (MQ=60)

 CACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCC                                                                                             <  SRR4302533.371470/94‑1 (MQ=60)

  ACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCA                                                                                            <  SRR4302533.4407870/94‑1 (MQ=60)

   CGACGTGCAGCAGCCCCAGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCAC                                                                                           >  SRR4302533.2451811/1‑94 (MQ=60)

    GACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACC                                                                                          >  SRR4302533.1116835/1‑94 (MQ=60)

    GACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACC                                                                                          <  SRR4302533.1691448/94‑1 (MQ=60)

    GACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACC                                                                                          <  SRR4302533.5525946/94‑1 (MQ=60)

     ACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCG                                                                                         <  SRR4302533.6144528/94‑1 (MQ=60)

      CGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGT                                                                                        <  SRR4302533.4044964/94‑1 (MQ=60)

      CGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGT                                                                                        >  SRR4302533.1534421/1‑94 (MQ=60)

        TGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGT                                                                                      >  SRR4302533.5495144/1‑94 (MQ=60)

          CAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTAC                                                                                    >  SRR4302533.4948025/1‑94 (MQ=60)

           AGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACT                                                                                   >  SRR4302533.3451645/1‑94 (MQ=60)

           AGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACT                                                                                   >  SRR4302533.4507022/1‑94 (MQ=60)

             CAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCT                                                                                 >  SRR4302533.4397243/1‑94 (MQ=60)

               GCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTC                                                                               >  SRR4302533.3269752/1‑94 (MQ=60)

                CCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCA                                                                              <  SRR4302533.4036186/94‑1 (MQ=60)

                CCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCA                                                                              >  SRR4302533.1829368/1‑94 (MQ=60)

                  CCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAAC                                                                            >  SRR4302533.4592171/1‑94 (MQ=60)

                    TGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTT                                                                          >  SRR4302533.4371640/1‑94 (MQ=60)

                     GACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTC                                                                         <  SRR4302533.5109740/94‑1 (MQ=60)

                     GACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTC                                                                         >  SRR4302533.2427771/1‑94 (MQ=60)

                       CCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCG                                                                       >  SRR4302533.4097775/1‑94 (MQ=60)

                       CCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCG                                                                       >  SRR4302533.2328634/1‑94 (MQ=60)

                       CCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCG                                                                       >  SRR4302533.6265362/1‑94 (MQ=60)

                        CAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGT                                                                      >  SRR4302533.638355/1‑94 (MQ=60)

                         AGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTA                                                                     <  SRR4302533.3186429/94‑1 (MQ=60)

                          GGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTGAACTTCCGTAC                                                                    >  SRR4302533.5073387/1‑94 (MQ=60)

                          GGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTAC                                                                    <  SRR4302533.5421005/94‑1 (MQ=60)

                          GGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTAC                                                                    <  SRR4302533.428899/94‑1 (MQ=60)

                          GGCAGCATATCAGAGAGCGCTGTCCAGCCCTGAAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTAC                                                                    <  SRR4302533.3270512/94‑1 (MQ=60)

                           GCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACG                                                                   <  SRR4302533.2148568/94‑1 (MQ=60)

                           GCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGCACG                                                                   <  SRR4302533.6313518/94‑1 (MQ=60)

                             AGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGAT                                                                 <  SRR4302533.700583/94‑1 (MQ=60)

                              GCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATG                                                                <  SRR4302533.1162373/94‑1 (MQ=60)

                               CATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGT                                                               <  SRR4302533.1392815/94‑1 (MQ=60)

                               CATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGT                                                               >  SRR4302533.3339706/1‑94 (MQ=60)

                                ATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTG                                                              >  SRR4302533.2251085/1‑94 (MQ=60)

                                ATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTG                                                              <  SRR4302533.4536730/94‑1 (MQ=60)

                                ATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTG                                                              <  SRR4302533.4630754/94‑1 (MQ=60)

                                 TATCAGAGAGCGCTGTCCAGCCCTGGAATGTCAGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGC                                                             <  SRR4302533.1007532/94‑1 (MQ=60)

                                  ATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCC                                                            <  SRR4302533.869838/94‑1 (MQ=60)

                                   TCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCG                                                           <  SRR4302533.5786586/94‑1 (MQ=60)

                                   TCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCG                                                           <  SRR4302533.6316114/94‑1 (MQ=60)

                                   TCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCG                                                           >  SRR4302533.1785169/1‑94 (MQ=60)

                                   TCAGAGAGCGCTGTCCAGCCATGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCG                                                           <  SRR4302533.4406969/94‑1 (MQ=60)

                                     AGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCA                                                         >  SRR4302533.3910768/1‑94 (MQ=60)

                                     AGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCA                                                         >  SRR4302533.5452436/1‑94 (MQ=60)

                                      GAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCAT                                                        <  SRR4302533.4747930/94‑1 (MQ=60)

                                       AGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATG                                                       <  SRR4302533.3192336/94‑1 (MQ=60)

                                       AGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATG                                                       >  SRR4302533.4219193/1‑94 (MQ=60)

                                       AGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATG                                                       <  SRR4302533.591602/94‑1 (MQ=60)

                                       AGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATG                                                       <  SRR4302533.1331317/94‑1 (MQ=60)

                                          GCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCA                                                    >  SRR4302533.543815/1‑94 (MQ=60)

                                           CGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAG                                                   >  SRR4302533.5840089/1‑94 (MQ=60)

                                            GCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGG                                                  <  SRR4302533.1369351/94‑1 (MQ=60)

                                            GCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGG                                                  <  SRR4302533.285034/94‑1 (MQ=60)

                                            GCTGTCAAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGG                                                  <  SRR4302533.2767260/94‑1 (MQ=60)

                                             CTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGG                                                 >  SRR4302533.6162712/1‑94 (MQ=60)

                                             CTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGG                                                 >  SRR4302533.3230998/1‑94 (MQ=60)

                                             CTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGG                                                 <  SRR4302533.247682/94‑1 (MQ=60)

                                              TGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGA                                                <  SRR4302533.3982939/94‑1 (MQ=60)

                                              TGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGA                                                >  SRR4302533.4451147/1‑94 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               >  SRR4302533.1470284/1‑94 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               >  SRR4302533.5566846/1‑94 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               <  SRR4302533.3275168/94‑1 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               <  SRR4302533.1618779/94‑1 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               >  SRR4302533.1682715/1‑94 (MQ=60)

                                               GTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGAT                                               >  SRR4302533.3879831/1‑94 (MQ=60)

                                                TCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATC                                              >  SRR4302533.2976964/1‑94 (MQ=60)

                                                 CCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCA                                             <  SRR4302533.3050422/94‑1 (MQ=60)

                                                  CAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCAT                                            <  SRR4302533.995164/94‑1 (MQ=60)

                                                    GCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATAT                                          <  SRR4302533.2245255/94‑1 (MQ=60)

                                                     CCCTGGAATGTCTGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAGCTTCCGTACGATGTGCCGCATGCCAGGGATCATATT                                         <  SRR4302533.3748863/94‑1 (MQ=60)

                                                      CCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTG                                        >  SRR4302533.2603158/1‑94 (MQ=60)

                                                      CCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTG                                        >  SRR4302533.6264029/1‑94 (MQ=60)

                                                       CTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGC                                       >  SRR4302533.1331191/1‑94 (MQ=60)

                                                        TGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGTG                                      >  SRR4302533.5521008/1‑94 (MQ=60)

                                                        TGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCG                                      <  SRR4302533.1248981/94‑1 (MQ=60)

                                                        TGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCG                                      >  SRR4302533.4385756/1‑94 (MQ=60)

                                                          GAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCC                                    >  SRR4302533.1639565/1‑94 (MQ=60)

                                                          GAATGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCC                                    <  SRR4302533.1424113/94‑1 (MQ=60)

                                                             TGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGA                                 >  SRR4302533.5348387/1‑94 (MQ=60)

                                                             TGTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGA                                 >  SRR4302533.1799767/1‑94 (MQ=60)

                                                              GTCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGAT                                <  SRR4302533.5592500/94‑1 (MQ=60)

                                                               TCCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATT                               <  SRR4302533.4779377/94‑1 (MQ=60)

                                                                CCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAGCTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTG                              <  SRR4302533.3824170/94‑1 (MQ=60)

                                                                CCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTG                              <  SRR4302533.567737/94‑1 (MQ=60)

                                                                CCGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTG                              <  SRR4302533.567736/94‑1 (MQ=60)

                                                                 CGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGC                             <  SRR4302533.1387852/94‑1 (MQ=60)

                                                                 CGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGC                             >  SRR4302533.902846/1‑94 (MQ=60)

                                                                 CGAAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGC                             >  SRR4302533.2970988/1‑94 (MQ=60)

                                                                   AAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCA                           >  SRR4302533.5085643/1‑94 (MQ=60)

                                                                   AAACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCA                           <  SRR4302533.1777835/94‑1 (MQ=60)

                                                                    AACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCAT                          <  SRR4302533.1919388/94‑1 (MQ=60)

                                                                     ACACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATT                         <  SRR4302533.2822995/94‑1 (MQ=60)

                                                                      CACGGAACATTTGGTGGTGTTGCCCACCGTGTGCTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTA                        <  SRR4302533.2124270/94‑1 (MQ=60)

                                                                      CACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTA                        >  SRR4302533.4079370/1‑94 (MQ=60)

                                                                      CACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTA                        >  SRR4302533.2623687/1‑94 (MQ=60)

                                                                      CACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTA                        <  SRR4302533.3363772/94‑1 (MQ=60)

                                                                       ACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAA                       <  SRR4302533.676468/94‑1 (MQ=60)

                                                                       ACGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAA                       <  SRR4302533.798982/94‑1 (MQ=60)

                                                                       ACGGAACATTTGGTGGTGTCGCGCACCGTGTACTCTTCAGCTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAA                       <  SRR4302533.5017141/94‑1 (MQ=60)

                                                                        CGGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAA                      <  SRR4302533.4141841/94‑1 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.3400840/1‑94 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     <  SRR4302533.1575620/94‑1 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     <  SRR4302533.699357/94‑1 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     <  SRR4302533.3238360/94‑1 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.1643942/1‑94 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.4144454/1‑94 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.438286/1‑94 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.3787582/1‑94 (MQ=60)

                                                                         GGAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAG                     >  SRR4302533.4484944/1‑94 (MQ=60)

                                                                          GAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGA                    <  SRR4302533.3529813/94‑1 (MQ=60)

                                                                          GAACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGA                    >  SRR4302533.4162670/1‑94 (MQ=60)

                                                                           gaccTTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGAC                   <  SRR4302533.4575968/90‑1 (MQ=60)

                                                                            ACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACG                  <  SRR4302533.6496/94‑1 (MQ=60)

                                                                            ACATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACG                  <  SRR4302533.4402144/94‑1 (MQ=60)

                                                                             CATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGT                 >  SRR4302533.2056066/1‑94 (MQ=60)

                                                                             CATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGT                 <  SRR4302533.5204640/94‑1 (MQ=60)

                                                                              ATTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGCTTGCCATTAAAGACGTT                >  SRR4302533.1495150/1‑94 (MQ=60)

                                                                               TTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTG               <  SRR4302533.5944381/94‑1 (MQ=60)

                                                                               TTTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTG               <  SRR4302533.1652607/94‑1 (MQ=60)

                                                                                TTGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGG              <  SRR4302533.4598782/94‑1 (MQ=60)

                                                                                 TGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGC             <  SRR4302533.446014/94‑1 (MQ=60)

                                                                                 TGGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGC             <  SRR4302533.2042334/94‑1 (MQ=60)

                                                                                  GGTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCG            <  SRR4302533.2046459/94‑1 (MQ=60)

                                                                                   GTGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGA           <  SRR4302533.1394164/94‑1 (MQ=60)

                                                                                    TGGTGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAA          <  SRR4302533.3259996/94‑1 (MQ=60)

                                                                                       TGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAAC       <  SRR4302533.2244260/94‑1 (MQ=60)

                                                                                       TGTTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAAC       <  SRR4302533.2357843/94‑1 (MQ=60)

                                                                                         TTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGC     <  SRR4302533.1826576/94‑1 (MQ=60)

                                                                                         TTGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGC     <  SRR4302533.4063208/94‑1 (MQ=60)

                                                                                          TGCCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGCG    >  SRR4302533.3018574/1‑94 (MQ=60)

                                                                                            CCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGGATGCCAGGGATGATATTGCGCAAGAATGCCATTAAAGACGTTGGCGAAAACGCGCT  >  SRR4302533.4102028/1‑94 (MQ=60)

                                                                                            CCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGCGCT  >  SRR4302533.678803/1‑94 (MQ=60)

GCACGACGTGCAGCAGCCCCTGACCAGGCAGCATATCAGAGAGCGCTGTCCAGCCCTGGAATGTCCGAAACACGGAACATTTGGTGGTGTTGTCCACCGTGTACTCTTCAACTTCCGTACGATGTGCCGCATGCCAGGGATCATATTGCGCCAGATTGCCATTAAAGACGTTGGCGAAAACGCGCT  >  NC_000913/857447‑857632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`