Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	873,303	C→T	L368F (CTC→TTC)	b0833 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	873,303	0	C	T	100.0%	897.5 / NA	241	L368F (CTC→TTC)	b0833	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (105/136); total (105/136)

Only 100 of 248 total aligned reads displayed.

ATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGCTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG  >  NC_000913/873213‑873392

  tCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTtctc                                                                                       >  1:1218663/1‑93 (MQ=255)

  tCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTtctc                                                                                       <  2:1495939/93‑1 (MQ=255)

  tCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTtctc                                                                                       <  1:4913804/93‑1 (MQ=255)

   cGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCa                                                                                      <  2:2354689/93‑1 (MQ=255)

   cGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCa                                                                                      <  2:6016889/93‑1 (MQ=255)

       aaGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGa                                                                                  <  1:2351748/93‑1 (MQ=255)

         ggCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAtc                                                                                >  1:4771749/1‑93 (MQ=255)

          gCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAtct                                                                               >  2:5917770/1‑93 (MQ=255)

          gCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAtct                                                                               <  1:2824899/93‑1 (MQ=255)

          gCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAtct                                                                               >  1:4069071/1‑93 (MQ=255)

             aTGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCtt                                                                            >  1:1381897/1‑93 (MQ=255)

             aTGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCtt                                                                            >  2:5504765/1‑93 (MQ=255)

              tGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTa                                                                           <  2:2916036/93‑1 (MQ=255)

               gCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTAc                                                                          <  2:5743439/93‑1 (MQ=255)

               gCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTAc                                                                          <  1:1834634/93‑1 (MQ=255)

                 gAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGa                                                                        >  1:2607449/1‑93 (MQ=255)

                 gAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGa                                                                        >  1:1059751/1‑93 (MQ=255)

                 gAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGa                                                                        >  1:4618249/1‑93 (MQ=255)

                  aaaGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGAt                                                                       >  2:3308231/1‑93 (MQ=255)

                  aaaGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGAt                                                                       >  1:6131986/1‑93 (MQ=255)

                    agagATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCa                                                                     <  1:2764601/93‑1 (MQ=255)

                    agagATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCa                                                                     <  2:1204271/93‑1 (MQ=255)

                     gagaTTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAg                                                                    <  2:2312394/93‑1 (MQ=255)

                      agaTTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAgg                                                                   <  1:4824087/93‑1 (MQ=255)

                         ttATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGaaa                                                                >  1:4976362/1‑93 (MQ=255)

                         ttATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGaaa                                                                <  1:1148172/93‑1 (MQ=255)

                         ttATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGaaa                                                                <  2:4290514/93‑1 (MQ=255)

                         ttATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGaaa                                                                >  2:5201619/1‑93 (MQ=255)

                          tATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAg                                                               <  2:875446/93‑1 (MQ=255)

                          tATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAg                                                               >  1:5993632/1‑93 (MQ=255)

                          tATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAg                                                               >  2:3760186/1‑93 (MQ=255)

                           aTCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGt                                                              <  2:4862485/93‑1 (MQ=255)

                           aTCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGt                                                              <  1:5588470/93‑1 (MQ=255)

                              aGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGt                                                           <  2:2282814/93‑1 (MQ=255)

                                 aTCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGtttt                                                        >  1:1695614/1‑93 (MQ=255)

                                 aTCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGtttt                                                        <  2:3625860/93‑1 (MQ=255)

                                 aTCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGtttt                                                        <  2:2512487/93‑1 (MQ=255)

                                  tCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTtta                                                       <  1:3703309/93‑1 (MQ=255)

                                  tCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTtta                                                       >  1:811322/1‑93 (MQ=255)

                                    aaaaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTttatt                                                     <  2:2740868/93‑1 (MQ=255)

                                     aaaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTttatta                                                    <  2:1031339/93‑1 (MQ=255)

                                     aaaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTttatta                                                    <  2:629815/93‑1 (MQ=255)

                                     aaaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTttatta                                                    <  2:4012587/93‑1 (MQ=255)

                                      aaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTaa                                                   >  1:1640729/1‑93 (MQ=255)

                                      aaaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTaa                                                   >  1:6209813/1‑93 (MQ=255)

                                       aaTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGCGGTTTTATTaaa                                                  >  2:3345622/1‑93 (MQ=255)

                                        aTTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTaaaa                                                 >  1:5758047/1‑93 (MQ=255)

                                         ttCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTaaaaa                                                <  2:787460/93‑1 (MQ=255)

                                         ttCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTaaaaa                                                >  1:3153430/1‑93 (MQ=255)

                                          tCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAat                                               <  1:3332333/93‑1 (MQ=255)

                                          tCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAat                                               >  2:3833943/1‑93 (MQ=255)

                                           cGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCTCTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAata                                              <  2:1639289/93‑1 (MQ=255)

                                           cGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAata                                              <  1:547051/93‑1 (MQ=255)

                                           cGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAata                                              <  1:2304322/93‑1 (MQ=255)

                                            gATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAatat                                             <  2:3427237/93‑1 (MQ=255)

                                             aTCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATg                                            >  2:4348229/1‑93 (MQ=255)

                                             aTCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATg                                            >  2:3444205/1‑93 (MQ=255)

                                             aTCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATg                                            <  2:1505163/93‑1 (MQ=255)

                                             aTCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATg                                            <  2:186141/93‑1 (MQ=255)

                                              tCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATgg                                           <  2:944873/93‑1 (MQ=255)

                                              tCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATgg                                           <  1:4396785/93‑1 (MQ=255)

                                               cgcgGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGc                                          <  2:4243797/93‑1 (MQ=255)

                                                gcgGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCg                                         <  2:1166914/93‑1 (MQ=255)

                                                  ggAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGat                                       <  1:563929/93‑1 (MQ=255)

                                                   gAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGatt                                      <  2:5831552/93‑1 (MQ=255)

                                                    aaaTGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGatta                                     <  1:5123499/93‑1 (MQ=255)

                                                      aTGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGGGattatt                                   >  2:5122775/1‑93 (MQ=255)

                                                      aTGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGattatt                                   <  1:4541061/93‑1 (MQ=255)

                                                        gAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGa                                 >  1:3003784/1‑93 (MQ=255)

                                                        gAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGa                                 <  1:5009815/93‑1 (MQ=255)

                                                         aaaGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAg                                >  1:5742895/1‑93 (MQ=255)

                                                         aaaGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAg                                >  1:4036059/1‑93 (MQ=255)

                                                          aaGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGt                               <  1:349693/93‑1 (MQ=255)

                                                           aGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTc                              <  2:4831420/93‑1 (MQ=255)

                                                           aGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTc                              <  2:2408800/93‑1 (MQ=255)

                                                            gATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGCTTATTGAGTCt                             >  2:1063022/1‑93 (MQ=255)

                                                            gATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCt                             >  1:584356/1‑93 (MQ=255)

                                                              tGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTaa                           <  2:6191243/93‑1 (MQ=255)

                                                                 cGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACaa                        <  1:3063407/93‑1 (MQ=255)

                                                                 cGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACaa                        >  2:5610497/1‑93 (MQ=255)

                                                                  gAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACaat                       <  1:2518366/93‑1 (MQ=255)

                                                                    aaTTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACaataa                     <  1:539685/93‑1 (MQ=255)

                                                                     aTTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACaataat                    <  2:4407158/93‑1 (MQ=255)

                                                                      ttGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATc                   >  2:5012371/1‑93 (MQ=255)

                                                                       tGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCa                  <  2:3531133/93‑1 (MQ=255)

                                                                       tGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCa                  >  2:557134/1‑93 (MQ=255)

                                                                       tGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGAGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCa                  >  1:390328/1‑93 (MQ=255)

                                                                        gAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAg                 >  1:2660256/1‑93 (MQ=255)

                                                                        gAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAg                 <  1:4168686/93‑1 (MQ=255)

                                                                          aCGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCGGGAAAGTGGTTTTTTTATAAATATGGCAATTATTGAGTCTAACAATAATCACTa               >  2:2834054/1‑93 (MQ=255)

                                                                          aCGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTa               <  1:2458271/93‑1 (MQ=255)

                                                                          aCGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTa               >  2:4586330/1‑93 (MQ=255)

                                                                            ggTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATc             <  1:4630793/93‑1 (MQ=255)

                                                                              tCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTg           >  2:5318200/1‑93 (MQ=255)

                                                                                aaataaatTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGc         >  2:5361029/1‑93 (MQ=255)

                                                                                 aataaatTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCt        >  1:4453855/1‑93 (MQ=255)

                                                                                  ataaatTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCtg       <  2:4463942/93‑1 (MQ=255)

                                                                                   taaatTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCtgt      <  1:475012/93‑1 (MQ=255)

                                                                                      atTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTggg   <  1:5343619/93‑1 (MQ=255)

                                                                                       ttGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAGTCAGTATCTGGCTGTgggg  <  2:6146362/93‑1 (MQ=255)

ATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGCTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG  >  NC_000913/873213‑873392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGCTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATCA  >  NC_000913/873210‑873396

AAAATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGT                                                                                               >  SRR4302533.1541488/1‑94 (MQ=60)

 AAATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTT                                                                                              <  SRR4302533.5442953/94‑1 (MQ=60)

  AATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTC                                                                                             <  SRR4302533.468242/94‑1 (MQ=60)

   ATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCT                                                                                            <  SRR4302533.1703886/94‑1 (MQ=60)

    TTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTC                                                                                           <  SRR4302533.2617320/94‑1 (MQ=60)

    TTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTC                                                                                           >  SRR4302533.1225980/1‑94 (MQ=60)

     TCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCA                                                                                          <  SRR4302533.4795579/94‑1 (MQ=60)

     TCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCA                                                                                          <  SRR4302533.4943568/94‑1 (MQ=60)

      CGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCAC                                                                                         >  SRR4302533.4821868/1‑94 (MQ=60)

       GTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACT                                                                                        >  SRR4302533.5672758/1‑94 (MQ=60)

        TGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTG                                                                                       >  SRR4302533.1366165/1‑94 (MQ=60)

          AAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAT                                                                                     <  SRR4302533.5218710/94‑1 (MQ=60)

          AAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGAT                                                                                     <  SRR4302533.2366297/94‑1 (MQ=60)

           AGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATC                                                                                    >  SRR4302533.4800669/1‑94 (MQ=60)

            GGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCT                                                                                   >  SRR4302533.4093841/1‑94 (MQ=60)

             GCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAATATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTC                                                                                  <  SRR4302533.3403928/94‑1 (MQ=60)

             GCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTC                                                                                  <  SRR4302533.2842283/94‑1 (MQ=60)

               GATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTT                                                                                >  SRR4302533.4629888/1‑94 (MQ=60)

               GATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTT                                                                                <  SRR4302533.4174636/94‑1 (MQ=60)

               GATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTT                                                                                >  SRR4302533.1390216/1‑94 (MQ=60)

                 TGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTAC                                                                              <  SRR4302533.2644580/94‑1 (MQ=60)

                 GGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTAC                                                                              <  SRR4302533.2747171/94‑1 (MQ=60)

                  GCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACG                                                                             <  SRR4302533.1845830/94‑1 (MQ=60)

                  GCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACG                                                                             <  SRR4302533.5072591/94‑1 (MQ=60)

                   CGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGA                                                                            >  SRR4302533.2623463/1‑94 (MQ=60)

                   CGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGA                                                                            >  SRR4302533.4991827/1‑94 (MQ=60)

                   CGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGA                                                                            <  SRR4302533.4442006/94‑1 (MQ=60)

                   CGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGA                                                                            >  SRR4302533.4646237/1‑94 (MQ=60)

                   CGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGA                                                                            >  SRR4302533.1065982/1‑94 (MQ=60)

                    GAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGAT                                                                           >  SRR4302533.3145157/1‑94 (MQ=60)

                    GAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGAT                                                                           >  SRR4302533.6168931/1‑94 (MQ=60)

                    GAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGAT                                                                           <  SRR4302533.1806750/94‑1 (MQ=60)

                     AAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATC                                                                          <  SRR4302533.6056472/94‑1 (MQ=60)

                      AAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCA                                                                         >  SRR4302533.5137840/1‑94 (MQ=60)

                       AGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAG                                                                        <  SRR4302533.2781551/94‑1 (MQ=60)

                       AGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAG                                                                        >  SRR4302533.2838166/1‑94 (MQ=60)

                         AGATTATCAGCATGAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGA                                                                      >  SRR4302533.3425385/1‑94 (MQ=60)

                         AGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGA                                                                      <  SRR4302533.4853309/94‑1 (MQ=60)

                         AGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGA                                                                      >  SRR4302533.4310136/1‑94 (MQ=60)

                           ATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAA                                                                    >  SRR4302533.5006536/1‑94 (MQ=60)

                            TTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAG                                                                   <  SRR4302533.1155028/94‑1 (MQ=60)

                            TTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAG                                                                   <  SRR4302533.3851225/94‑1 (MQ=60)

                            TTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAG                                                                   >  SRR4302533.3259404/1‑94 (MQ=60)

                            TTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAG                                                                   <  SRR4302533.4521411/94‑1 (MQ=60)

                            TTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAG                                                                   >  SRR4302533.6029935/1‑94 (MQ=60)

                             TATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATCAATTGTTCTCACTGATCTCTTACGATCAGGAAAGT                                                                  >  SRR4302533.5813469/1‑94 (MQ=60)

                             TATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGT                                                                  >  SRR4302533.2327865/1‑94 (MQ=60)

                              ATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTG                                                                 <  SRR4302533.5622234/94‑1 (MQ=60)

                               TCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGG                                                                <  SRR4302533.3628760/94‑1 (MQ=60)

                                CAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGT                                                               <  SRR4302533.316637/94‑1 (MQ=60)

                                 AGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGCT                                                              >  SRR4302533.1674285/1‑94 (MQ=60)

                                  GCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTT                                                             <  SRR4302533.569239/94‑1 (MQ=60)

                                   CATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTT                                                            >  SRR4302533.1705882/1‑94 (MQ=60)

                                    ATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTA                                                           >  SRR4302533.4216809/1‑94 (MQ=60)

                                    ATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTA                                                           >  SRR4302533.816077/1‑94 (MQ=60)

                                    ATCAAAAATTCGATCACGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTT                                                           >  SRR4302533.4715656/1‑94 (MQ=60)

                                     TCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTAT                                                          <  SRR4302533.3726055/94‑1 (MQ=60)

                                     ACAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTAT                                                          <  SRR4302533.4812663/94‑1 (MQ=60)

                                       AAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTA                                                        <  SRR4302533.5396085/94‑1 (MQ=60)

                                       AAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTA                                                        <  SRR4302533.544319/94‑1 (MQ=60)

                                        AAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAA                                                       >  SRR4302533.6247057/1‑94 (MQ=60)

                                        AAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAA                                                       >  SRR4302533.1650670/1‑94 (MQ=60)

                                          AATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAA                                                     >  SRR4302533.120816/1‑94 (MQ=60)

                                          AATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAA                                                     >  SRR4302533.5792793/1‑94 (MQ=60)

                                           ATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAA                                                    >  SRR4302533.3172815/1‑94 (MQ=60)

                                            TTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAAT                                                   <  SRR4302533.4093066/94‑1 (MQ=60)

                                            TTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAAT                                                   <  SRR4302533.2273434/94‑1 (MQ=60)

                                            TTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAAT                                                   >  SRR4302533.4891442/1‑94 (MQ=60)

                                             TCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATA                                                  <  SRR4302533.4025099/94‑1 (MQ=60)

                                             TCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATA                                                  <  SRR4302533.4084421/94‑1 (MQ=60)

                                             TCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATA                                                  <  SRR4302533.3352926/94‑1 (MQ=60)

                                              CGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATAT                                                 <  SRR4302533.550300/94‑1 (MQ=60)

                                              CGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATAT                                                 <  SRR4302533.2318596/94‑1 (MQ=60)

                                                 TCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGC                                              <  SRR4302533.4423331/94‑1 (MQ=60)

                                                  CGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCG                                             >  SRR4302533.4647984/1‑94 (MQ=60)

                                                  CGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCG                                             <  SRR4302533.62621/94‑1 (MQ=60)

                                                    CGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGAT                                           >  SRR4302533.6213930/1‑94 (MQ=60)

                                                     GGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATT                                          <  SRR4302533.567270/94‑1 (MQ=60)

                                                       AAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTAT                                        <  SRR4302533.5154453/94‑1 (MQ=60)

                                                       AAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTAT                                        <  SRR4302533.4916180/94‑1 (MQ=60)

                                                        AATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATT                                       <  SRR4302533.2910729/94‑1 (MQ=60)

                                                        AATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATT                                       >  SRR4302533.2733829/1‑94 (MQ=60)

                                                         ATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTG                                      <  SRR4302533.4568556/94‑1 (MQ=60)

                                                         ATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTG                                      <  SRR4302533.5788952/94‑1 (MQ=60)

                                                          TGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGA                                     <  SRR4302533.1078192/94‑1 (MQ=60)

                                                          TGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGA                                     >  SRR4302533.5716342/1‑94 (MQ=60)

                                                          TGAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGA                                     >  SRR4302533.3022159/1‑94 (MQ=60)

                                                           GAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAG                                    >  SRR4302533.5777552/1‑94 (MQ=60)

                                                           GAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAG                                    <  SRR4302533.5040167/94‑1 (MQ=60)

                                                           GAAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAG                                    >  SRR4302533.4060625/1‑94 (MQ=60)

                                                            AAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGT                                   >  SRR4302533.2483678/1‑94 (MQ=60)

                                                            AAAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGT                                   >  SRR4302533.6103948/1‑94 (MQ=60)

                                                             AANANGNCNAAATNGAACGGTCAAATAAATNGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTC                                  <  SRR4302533.610769/94‑1 (MQ=60)

                                                             AAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTC                                  <  SRR4302533.2918981/94‑1 (MQ=60)

                                                             AAGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTC                                  <  SRR4302533.351825/94‑1 (MQ=60)

                                                              AGATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCT                                 >  SRR4302533.587802/1‑94 (MQ=60)

                                                                ATGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAA                               <  SRR4302533.1448402/94‑1 (MQ=60)

                                                                 TGCCGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAAC                              >  SRR4302533.2614505/1‑94 (MQ=60)

                                                                    CGAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAAT                           <  SRR4302533.3082214/94‑1 (MQ=60)

                                                                     GAAATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATA                          <  SRR4302533.2533881/94‑1 (MQ=60)

                                                                       AATTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAAT                        <  SRR4302533.542894/94‑1 (MQ=60)

                                                                         TTGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGAGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCA                      >  SRR4302533.392688/1‑94 (MQ=60)

                                                                          TGAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAG                     >  SRR4302533.2676592/1‑94 (MQ=60)

                                                                           GAACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGT                    <  SRR4302533.4193950/94‑1 (MQ=60)

                                                                            AACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTA                   >  SRR4302533.670161/1‑94 (MQ=60)

                                                                             ACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTAT                  <  SRR4302533.4636695/94‑1 (MQ=60)

                                                                             ACGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTAT                  <  SRR4302533.2473439/94‑1 (MQ=60)

                                                                              CGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAATGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATC                 >  SRR4302533.2386772/1‑94 (MQ=60)

                                                                              CGGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATC                 <  SRR4302533.3869467/94‑1 (MQ=60)

                                                                               GGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCT                <  SRR4302533.2374380/94‑1 (MQ=60)

                                                                               GGTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCT                <  SRR4302533.4658857/94‑1 (MQ=60)

                                                                                GTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTG               >  SRR4302533.5022777/1‑94 (MQ=60)

                                                                                GTCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTG               >  SRR4302533.4979456/1‑94 (MQ=60)

                                                                                 TCAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGG              >  SRR4302533.4667682/1‑94 (MQ=60)

                                                                                  CAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGC             >  SRR4302533.5879023/1‑94 (MQ=60)

                                                                                  CAAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGC             <  SRR4302533.5526239/94‑1 (MQ=60)

                                                                                   AAATAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCT            >  SRR4302533.4480784/1‑94 (MQ=60)

                                                                                      TAAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTG         <  SRR4302533.477849/94‑1 (MQ=60)

                                                                                       AAATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGG        >  SRR4302533.2047499/1‑94 (MQ=60)

                                                                                        AATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGG       >  SRR4302533.3056150/1‑94 (MQ=60)

                                                                                         ATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG      <  SRR4302533.579263/94‑1 (MQ=60)

                                                                                         ATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG      >  SRR4302533.5572579/1‑94 (MQ=60)

                                                                                         ATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG      >  SRR4302533.5407109/1‑94 (MQ=60)

                                                                                         ATTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGG      <  SRR4302533.5375663/94‑1 (MQ=60)

                                                                                          TTGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGA     <  SRR4302533.1287178/94‑1 (MQ=60)

                                                                                           TGTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGAT    >  SRR4302533.3472149/1‑94 (MQ=60)

                                                                                            GTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATC   >  SRR4302533.2618512/1‑94 (MQ=60)

                                                                                            GTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATC   >  SRR4302533.2071225/1‑94 (MQ=60)

                                                                                            GTTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATC   <  SRR4302533.3746544/94‑1 (MQ=60)

                                                                                             TTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATCA  <  SRR4302533.5960664/94‑1 (MQ=60)

                                                                                             TTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATCA  >  SRR4302533.3567149/1‑94 (MQ=60)

                                                                                             TTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATCA  >  SRR4302533.4116322/1‑94 (MQ=60)

AAAATTCGTGAAGGCGATGCGAAAGAGATTATCAGCATCAAAAATTCGATCGCGGAAATGAAAGATGCCGAAATTGAACGGTCAAATAAATTGCTCTCACTGATCTCTTACGATCAGGAAAGTGGTTTTATTAAAAATATGGCGATTATTGAGTCTAACAATAATCAGTATCTGGCTGTGGGGATCA  >  NC_000913/873210‑873396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`