Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	903,254	A→G	V146A (GTC→GCC)	ybjP ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	903,254	0	A	G	100.0%	632.5 / NA	198	V146A (GTC→GCC)	ybjP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (91/107); total (91/107)

Only 100 of 203 total aligned reads displayed.

TTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGG  >  NC_000913/903163‑903343

ttGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGcc                                                                                         >  2:410045/1‑93 (MQ=255)

 tGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGccc                                                                                        <  1:3190688/93‑1 (MQ=255)

   aTCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACCTCGTCGATGGCACaa                                                                                      >  2:1183154/1‑93 (MQ=255)

     cagggCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAaca                                                                                    <  2:195816/90‑1 (MQ=255)

     cAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAaca                                                                                    >  2:266143/1‑93 (MQ=255)

       aGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACt                                                                                  >  1:1088342/1‑93 (MQ=255)

       aGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACt                                                                                  >  1:1735359/1‑93 (MQ=255)

       aGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACt                                                                                  >  1:3604587/1‑93 (MQ=255)

        ggCGTAGGCGATTCTCGATGGACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTg                                                                                 <  2:4651893/93‑1 (MQ=255)

          cGTTAGCGATTCTCGATGGACGGAGGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGc                                                                               <  1:5882087/93‑1 (MQ=255)

           gTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGcc                                                                              >  2:1761096/1‑93 (MQ=255)

           gTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAAAGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTCGcc                                                                              >  2:2180897/1‑93 (MQ=255)

            ttAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCt                                                                             >  1:3470152/1‑93 (MQ=255)

            ttAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTCGCCt                                                                             >  2:5654848/1‑93 (MQ=255)

             tAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCtt                                                                            <  1:5068368/93‑1 (MQ=255)

              aGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTc                                                                           <  1:70323/93‑1 (MQ=255)

               gCGATCCTCGATGAACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTcc                                                                          <  1:1259703/93‑1 (MQ=255)

                cGATTCTCGATGGACTGACGGAGCTTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCt                                                                         <  2:2382653/93‑1 (MQ=255)

                 gATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTg                                                                        >  2:3686322/1‑93 (MQ=255)

                  aTTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGa                                                                       >  1:3105132/1‑93 (MQ=255)

                  aTTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGa                                                                       <  2:2924459/93‑1 (MQ=255)

                  aTTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGa                                                                       >  1:3712052/1‑93 (MQ=255)

                  aTTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGa                                                                       >  1:5051370/1‑93 (MQ=255)

                   ttCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCttac                                                                      >  1:4002795/1‑90 (MQ=255)

                   ttCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGaa                                                                      >  1:2134686/1‑93 (MQ=255)

                    tctcGATGGACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAAt                                                                     <  1:3020732/93‑1 (MQ=255)

                    tctcGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAAt                                                                     >  2:4026051/1‑93 (MQ=255)

                    tctcGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAAt                                                                     >  2:2548258/1‑93 (MQ=255)

                     ctcGATGGACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATc                                                                    <  1:4609446/93‑1 (MQ=255)

                       cGATGGCCGGACGGAGGGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCAt                                                                  <  2:1153676/93‑1 (MQ=255)

                        gagggACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCAtt                                                                 <  1:2755387/90‑1 (MQ=255)

                        gATGGACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCAtt                                                                 <  2:4482973/93‑1 (MQ=255)

                        gATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCAtt                                                                 >  2:4984299/1‑93 (MQ=255)

                         aTGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTa                                                                >  1:4409546/1‑93 (MQ=255)

                         aTGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTa                                                                <  1:4178113/93‑1 (MQ=255)

                          tGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTaa                                                               <  1:4764831/93‑1 (MQ=255)

                           ggACTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAac                                                              <  1:5331103/93‑1 (MQ=255)

                            gACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAaca                                                             >  1:4854370/1‑93 (MQ=255)

                             aCTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAacac                                                            <  2:708113/93‑1 (MQ=255)

                              cTGACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACt                                                           <  2:4714413/93‑1 (MQ=255)

                               cgACGGCGCGTACCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACt                                                           <  2:4310735/92‑1 (MQ=255)

                                gACGGAGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTc                                                         <  1:6030552/93‑1 (MQ=255)

                                gACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTc                                                         <  2:1010891/93‑1 (MQ=255)

                                  cGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTACCGCCCATGGTCGATGCCCCATCACTGGCCTTCCTGAATCATTAACCCTTCAt                                                       <  2:4959424/93‑1 (MQ=255)

                                   ggAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATc                                                      >  1:2893005/1‑93 (MQ=255)

                                    gAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATcc                                                     <  2:809040/93‑1 (MQ=255)

                                     aGCGTC‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCt                                                    <  1:1030436/93‑1 (MQ=255)

                                        gTA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGcc                                                 >  2:373042/1‑93 (MQ=255)

                                         tA‑CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCa                                                >  1:1648872/1‑93 (MQ=255)

                                          tccccGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCa                                                <  2:615624/91‑1 (MQ=255)

                                           ccccGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCaa                                               <  1:2386127/92‑1 (MQ=255)

                                            cccGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAc                                              <  1:5956635/93‑1 (MQ=255)

                                             ccgccgTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAcc                                             >  1:3858015/1‑93 (MQ=255)

                                              cgccgTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAccc                                            >  1:4678433/1‑93 (MQ=255)

                                              cgccgTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAccc                                            <  1:3071095/93‑1 (MQ=255)

                                                ccgTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTg                                          >  1:121189/1‑93 (MQ=255)

                                                  gTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGt                                        >  1:2825357/1‑93 (MQ=255)

                                                  gTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGt                                        <  1:1573799/93‑1 (MQ=255)

                                                  gTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGt                                        <  2:1597356/93‑1 (MQ=255)

                                                  gTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGt                                        >  2:1686666/1‑93 (MQ=255)

                                                   tGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTc                                       <  2:5478857/93‑1 (MQ=255)

                                                   tGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTc                                       >  2:1335371/1‑93 (MQ=255)

                                                    ggCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCa                                      >  1:4454137/1‑93 (MQ=255)

                                                       aTGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAccc                                   >  2:3237770/1‑93 (MQ=255)

                                                       aTGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAccc                                   >  1:5003517/1‑93 (MQ=255)

                                                       aTGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAccc                                   >  2:66614/1‑93 (MQ=255)

                                                       aTGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCAccc                                   >  1:1451733/1‑93 (MQ=255)

                                                        tGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCTTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCt                                  <  2:5130537/93‑1 (MQ=255)

                                                        tGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCt                                  >  1:5718542/1‑93 (MQ=255)

                                                            cGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGttt                              <  2:3364256/93‑1 (MQ=255)

                                                              cTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTga                            <  2:5816736/93‑1 (MQ=255)

                                                              cTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTga                            <  1:5491807/93‑1 (MQ=255)

                                                              cTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTga                            <  1:5755258/93‑1 (MQ=255)

                                                                aCCGCC‑AAGTAACGCACATCGTCGNTGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTgaga                          <  2:1810061/93‑1 (MQ=255)

                                                                aCCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTgaga                          <  1:1168121/93‑1 (MQ=255)

                                                                aCCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTgaga                          <  1:6219246/93‑1 (MQ=255)

                                                                aCCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTgaga                          <  2:3266162/93‑1 (MQ=255)

                                                                   cgccaaGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATc                        <  1:913497/89‑1 (MQ=255)

                                                                    gccaaGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATcc                       >  1:3239753/4‑93 (MQ=255)

                                                                      caaGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAc                     <  1:4026051/92‑1 (MQ=255)

                                                                       aaGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcg                    >  1:736020/1‑93 (MQ=255)

                                                                        aGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcgc                   <  1:1848609/93‑1 (MQ=255)

                                                                        aGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAcgc                   <  1:2749547/93‑1 (MQ=255)

                                                                          tAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACgcgc                 <  2:6282231/93‑1 (MQ=255)

                                                                             cGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAAt              >  1:404198/1‑93 (MQ=255)

                                                                              gCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATg             >  2:188921/1‑93 (MQ=255)

                                                                              gCACATCGTCAATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATg             <  2:2724235/93‑1 (MQ=255)

                                                                               cacaTCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATgg            <  1:2667130/93‑1 (MQ=255)

                                                                                acaTCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGa           >  1:838917/1‑93 (MQ=255)

                                                                                 caTCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGaa          <  2:4432943/93‑1 (MQ=255)

                                                                                   tcgtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATg        <  1:5561967/93‑1 (MQ=255)

                                                                                   tcgtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATg        >  2:6206812/1‑93 (MQ=255)

                                                                                    cgtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGt       >  2:2261560/1‑93 (MQ=255)

                                                                                     gtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGtt      >  2:621951/1‑93 (MQ=255)

                                                                                     gtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGtt      <  2:2832350/93‑1 (MQ=255)

                                                                                     gtcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGtt      <  2:1221546/93‑1 (MQ=255)

                                                                                      tcgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTa     >  2:5449481/1‑93 (MQ=255)

                                                                                       cgATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTAc    <  1:5246988/93‑1 (MQ=255)

                                                                                        gATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACg   >  1:612024/1‑93 (MQ=255)

                                                                                        gATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACg   <  2:902923/93‑1 (MQ=255)

TTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTA‑CCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGG  >  NC_000913/903163‑903343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAT  >  NC_000913/903161‑903347

GGTTGATCAAGGCGTCAGCGATTCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGC                                                                                              <  SRR4302533.3959243/94‑1 (MQ=60)

GGTTGAGCAAGCCGTTAGCGATTCTCGATGGACGGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGC                                                                                              <  SRR4302533.6073575/94‑1 (MQ=60)

   TGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCA                                                                                           <  SRR4302533.3210317/94‑1 (MQ=60)

     ATCAAGGCTTTAGCAATTCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAAC                                                                                         <  SRR4302533.4343367/94‑1 (MQ=60)

        AAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACT                                                                                      >  SRR4302533.1094752/1‑94 (MQ=60)

        AAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACT                                                                                      >  SRR4302533.1745885/1‑94 (MQ=60)

        AAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACT                                                                                      >  SRR4302533.4605694/1‑94 (MQ=60)

        AAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACT                                                                                      >  SRR4302533.3626772/1‑94 (MQ=60)

           gtaTTAGCGATTCTCGATGGGCTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGC                                                                                   <  SRR4302533.4704768/91‑1 (MQ=60)

            CGTTAGCGATTCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCC                                                                                  <  SRR4302533.138882/94‑1 (MQ=60)

            CGTTAGCGATTCTCGATGGACGGAGGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCC                                                                                  <  SRR4302533.5917636/94‑1 (MQ=60)

             GTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCT                                                                                 >  SRR4302533.3491573/1‑94 (MQ=60)

             GTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCT                                                                                 <  SRR4302533.6138387/94‑1 (MQ=60)

             GTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCT                                                                                 <  SRR4302533.2839303/94‑1 (MQ=60)

              TTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTT                                                                                <  SRR4302533.867631/94‑1 (MQ=60)

              TTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTT                                                                                >  SRR4302533.985192/1‑94 (MQ=60)

               TGGCGATTCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTC                                                                               <  SRR4302533.5351296/94‑1 (MQ=60)

               TAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTC                                                                               <  SRR4302533.3567261/94‑1 (MQ=60)

               TAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTC                                                                               <  SRR4302533.5098974/94‑1 (MQ=60)

                AGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCC                                                                              <  SRR4302533.70779/94‑1 (MQ=60)

                 GCGATCCTCGATGAACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCT                                                                             <  SRR4302533.1267239/94‑1 (MQ=60)

                  CGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTG                                                                            >  SRR4302533.5387707/1‑94 (MQ=60)

                  CGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTG                                                                            >  SRR4302533.1160337/1‑94 (MQ=60)

                   GATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGA                                                                           >  SRR4302533.3124219/1‑94 (MQ=60)

                   GATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGA                                                                           >  SRR4302533.3734848/1‑94 (MQ=60)

                   GATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGA                                                                           >  SRR4302533.5081916/1‑94 (MQ=60)

                    ATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTtac                                                                          >  SRR4302533.4027168/1‑91 (MQ=60)

                    ATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAA                                                                          >  SRR4302533.2147849/1‑94 (MQ=60)

                      TCTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATC                                                                        <  SRR4302533.3039220/94‑1 (MQ=60)

                       CTCGATGGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCA                                                                       <  SRR4302533.4637361/94‑1 (MQ=60)

                       CGCGATGGACTGACGAAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCA                                                                       <  SRR4302533.5038977/94‑1 (MQ=60)

                          GATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTA                                                                    >  SRR4302533.5091447/1‑94 (MQ=60)

                          GATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTA                                                                    >  SRR4302533.4436174/1‑94 (MQ=60)

                          GAGGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTA                                                                    <  SRR4302533.2772284/94‑1 (MQ=60)

                           ATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAA                                                                   <  SRR4302533.4203425/94‑1 (MQ=60)

                            TGGACTGGCGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAAC                                                                  <  SRR4302533.3791719/94‑1 (MQ=60)

                            TGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAAC                                                                  <  SRR4302533.4053117/94‑1 (MQ=60)

                            TGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAAC                                                                  <  SRR4302533.4793728/94‑1 (MQ=60)

                             GGACTGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACA                                                                 <  SRR4302533.5363057/94‑1 (MQ=60)

                             GGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACA                                                                 >  SRR4302533.4883789/1‑94 (MQ=60)

                              GACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACAC                                                                <  SRR4302533.5255339/94‑1 (MQ=60)

                                  GACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCA                                                            <  SRR4302533.6067099/94‑1 (MQ=60)

                                  GACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCA                                                            >  SRR4302533.3030841/1‑94 (MQ=60)

                                    CGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATC                                                          >  SRR4302533.1248598/1‑94 (MQ=60)

                                    CGGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATC                                                          >  SRR4302533.2910786/1‑94 (MQ=60)

                                     GGAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCC                                                         >  SRR4302533.3238152/1‑94 (MQ=60)

                                      gagctgcCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCT                                                        <  SRR4302533.4997788/87‑1 (MQ=60)

                                      GAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCT                                                        <  SRR4302533.5759010/94‑1 (MQ=60)

                                      GAGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCT                                                        <  SRR4302533.1737253/94‑1 (MQ=60)

                                      GAGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCT                                                        >  SRR4302533.5992651/1‑94 (MQ=60)

                                       AGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTG                                                       <  SRR4302533.1036497/94‑1 (MQ=60)

                                       AGCGTCCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTG                                                       <  SRR4302533.2472720/94‑1 (MQ=60)

                                       AGCGTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTG                                                       >  SRR4302533.731929/1‑94 (MQ=60)

                                          GTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCA                                                    <  SRR4302533.4930714/94‑1 (MQ=60)

                                          GTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCA                                                    >  SRR4302533.1658864/1‑94 (MQ=60)

                                          GTACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCA                                                    >  SRR4302533.4780278/1‑94 (MQ=60)

                                            CCCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAC                                                  <  SRR4302533.2400872/94‑1 (MQ=60)

                                            ACCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAAC                                                  >  SRR4302533.368873/1‑94 (MQ=60)

                                             CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACC                                                 <  SRR4302533.5992668/94‑1 (MQ=60)

                                             CCCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACC                                                 >  SRR4302533.3881572/1‑94 (MQ=60)

                                              CCGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCC                                                >  SRR4302533.4706787/1‑94 (MQ=60)

                                               CGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCT                                               <  SRR4302533.2761937/94‑1 (MQ=60)

                                               CGCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCT                                               <  SRR4302533.3089949/94‑1 (MQ=60)

                                                GCCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTG                                              >  SRR4302533.121955/1‑94 (MQ=60)

                                                 CCGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGG                                             >  SRR4302533.1594925/1‑94 (MQ=60)

                                                  CGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGT                                            >  SRR4302533.1092097/1‑94 (MQ=60)

                                                  CGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGT                                            <  SRR4302533.121760/94‑1 (MQ=60)

                                                  CGTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGT                                            >  SRR4302533.2842744/1‑94 (MQ=60)

                                                   GTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTC                                           <  SRR4302533.4440404/94‑1 (MQ=60)

                                                   GTGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTC                                           <  SRR4302533.1583276/94‑1 (MQ=60)

                                                    TGGCATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCA                                          >  SRR4302533.4481068/1‑94 (MQ=60)

                                                       CATGAACGCTACCGCC‑AAGTAACGCACATCGTCGGTGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCC                                       >  SRR4302533.5540518/1‑94 (MQ=60)

                                                       CATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCC                                       >  SRR4302533.1460493/1‑94 (MQ=60)

                                                       CATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCC                                       >  SRR4302533.5033842/1‑94 (MQ=60)

                                                        ATGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCT                                      >  SRR4302533.5753073/1‑94 (MQ=60)

                                                         TGAACGCTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTG                                     >  SRR4302533.1483735/1‑94 (MQ=60)

                                                               CTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAG                               <  SRR4302533.5789984/94‑1 (MQ=60)

                                                               CTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAG                               >  SRR4302533.5654972/1‑94 (MQ=60)

                                                               CTACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAG                               <  SRR4302533.5524935/94‑1 (MQ=60)

                                                                 ACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGAT                             <  SRR4302533.1175129/94‑1 (MQ=60)

                                                                 ACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGAT                             <  SRR4302533.6256533/94‑1 (MQ=60)

                                                                 ACCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGAT                             <  SRR4302533.3285851/94‑1 (MQ=60)

                                                                  CCGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATC                            <  SRR4302533.698836/94‑1 (MQ=60)

                                                                   CGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCC                           <  SRR4302533.918866/94‑1 (MQ=60)

                                                                   CGCC‑AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCC                           >  SRR4302533.3259718/1‑94 (MQ=60)

                                                                      CCAAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCAC                         <  SRR4302533.4039924/94‑1 (MQ=60)

                                                                       CAAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACG                        >  SRR4302533.740350/1‑94 (MQ=60)

                                                                       CAAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACG                        <  SRR4302533.4050560/94‑1 (MQ=60)

                                                                       CAAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACG                        <  SRR4302533.1749977/94‑1 (MQ=60)

                                                                        AAGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGC                       <  SRR4302533.2340082/94‑1 (MQ=60)

                                                                         AGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCG                      <  SRR4302533.2766403/94‑1 (MQ=60)

                                                                         AGTAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCG                      <  SRR4302533.1859882/94‑1 (MQ=60)

                                                                           TAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCGACCCTGGTCACCCTGTTTGAGATCCACGCGCA                    >  SRR4302533.2842965/1‑94 (MQ=60)

                                                                           TAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCA                    >  SRR4302533.826231/1‑94 (MQ=60)

                                                                           TAACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCA                    >  SRR4302533.5868165/1‑94 (MQ=60)

                                                                             ACGCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAAT                  >  SRR4302533.406633/1‑94 (MQ=60)

                                                                               GCACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGG                >  SRR4302533.3154654/1‑94 (MQ=60)

                                                                                CACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGA               <  SRR4302533.2683495/94‑1 (MQ=60)

                                                                                CACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGA               <  SRR4302533.3108778/94‑1 (MQ=60)

                                                                                CACATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGA               >  SRR4302533.843830/1‑94 (MQ=60)

                                                                                   ATCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATG            >  SRR4302533.4809624/1‑94 (MQ=60)

                                                                                    TCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGT           <  SRR4302533.6004446/94‑1 (MQ=60)

                                                                                    TCGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGT           <  SRR4302533.5595580/94‑1 (MQ=60)

                                                                                     CGTCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTT          >  SRR4302533.3932756/1‑94 (MQ=60)

                                                                                       TCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTAC        <  SRR4302533.6209264/94‑1 (MQ=60)

                                                                                       TCGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTAC        <  SRR4302533.419471/94‑1 (MQ=60)

                                                                                        CGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACG       >  SRR4302533.615622/1‑94 (MQ=60)

                                                                                        CGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACG       <  SRR4302533.671592/94‑1 (MQ=60)

                                                                                        CGATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACG       <  SRR4302533.5278535/94‑1 (MQ=60)

                                                                                         GATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGG      <  SRR4302533.2098375/94‑1 (MQ=60)

                                                                                         GATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGG      <  SRR4302533.3073814/94‑1 (MQ=60)

                                                                                          ATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGG     <  SRR4302533.2767266/94‑1 (MQ=60)

                                                                                          ATGGCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGG     <  SRR4302533.4783729/94‑1 (MQ=60)

                                                                                             GCCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAT  <  SRR4302533.5821910/94‑1 (MQ=60)

GGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCCTGCCAACCCTGGTCACCCTGTTTGAGATCCACGCGCAATGGAATGTTACGGGCAT  >  NC_000913/903161‑903347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`