Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	931,267	T→C	T3A (ACG→GCG)	trxB ←	thioredoxin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	931,267	0	T	C	100.0%	715.3 / NA	223	T3A (ACG→GCG)	trxB	thioredoxin reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/125); total (98/125)

Only 100 of 227 total aligned reads displayed.

CAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT  >  NC_000913/931177‑931355

caggttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCgcgc                                                                                        >  1:5929407/1‑93 (MQ=255)

  ggttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGccc                                                                                      >  1:1528311/1‑93 (MQ=255)

    ttgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCAt                                                                                    <  1:5521780/93‑1 (MQ=255)

     tgcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATg                                                                                   >  2:3051942/1‑93 (MQ=255)

      gcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATga                                                                                  >  2:2108907/1‑93 (MQ=255)

      gcaggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATga                                                                                  >  2:460286/1‑93 (MQ=255)

        aggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATgaga                                                                                >  1:5198052/1‑93 (MQ=255)

         ggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAt                                                                               >  1:4990849/1‑93 (MQ=255)

         ggttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAt                                                                               >  1:2853433/1‑93 (MQ=255)

          gttgGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATc                                                                              >  2:5223910/1‑93 (MQ=255)

             ggCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATcccc                                                                           >  2:222734/1‑93 (MQ=255)

             ggCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATcccc                                                                           <  1:2766284/93‑1 (MQ=255)

               cgcgcgcCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCAt                                                                         <  2:1241664/93‑1 (MQ=255)

                   cgccgcGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAgtt                                                                     <  2:2386232/93‑1 (MQ=255)

                    gccgcGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGATTGGTCGCGCCCATGAGATCCCCATAgttg                                                                    >  2:909834/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 >  2:4520385/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 >  2:427550/1‑93 (MQ=255)

                       gcgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGttgttg                                                                 <  2:1000251/93‑1 (MQ=255)

                        cgTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCCGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTgg                                                                >  2:3026705/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  1:5386440/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  1:3897830/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  2:5312094/1‑93 (MQ=255)

                         gTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGc                                                               >  2:5572588/1‑93 (MQ=255)

                            gACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGa                                                            >  1:1697646/1‑93 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         >  1:2818845/1‑93 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         <  1:1452444/93‑1 (MQ=255)

                               agcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACaa                                                         <  1:5959963/93‑1 (MQ=255)

                                gcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAt                                                        <  1:3089847/93‑1 (MQ=255)

                                gcagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAt                                                        <  2:4455207/93‑1 (MQ=255)

                                 cagcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATg                                                       <  1:6145110/93‑1 (MQ=255)

                                   gcGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATggg                                                     >  1:5345947/1‑93 (MQ=255)

                                       tgtATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACACTGGGCAgg                                                 <  2:6161604/93‑1 (MQ=255)

                                         tATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGAt                                               >  1:1329524/1‑93 (MQ=255)

                                          aTCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTTTTTGGTCGCGCCCATGAGATACCCATAGTTGTTGGCAGACAATGGGCAGGAtt                                              >  1:4788036/1‑93 (MQ=255)

                                          aTCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGAtt                                              >  1:3706371/1‑93 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             <  2:5466097/93‑1 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             >  1:1504546/1‑93 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             <  1:3029881/93‑1 (MQ=255)

                                           tCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTg                                             >  1:2982184/1‑93 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            <  2:3780856/93‑1 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            >  1:1136349/1‑93 (MQ=255)

                                            cccGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGt                                            >  1:4753459/1‑93 (MQ=255)

                                             ccgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTa                                           >  1:4611092/1‑93 (MQ=255)

                                             ccgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTa                                           <  1:2408475/93‑1 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          <  2:4855035/93‑1 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          >  2:2659025/1‑93 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          >  2:1093909/1‑93 (MQ=255)

                                              cgccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAg                                          <  1:1960366/93‑1 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         >  1:5077874/1‑93 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         >  1:2891448/1‑93 (MQ=255)

                                               gccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAgg                                         <  2:5154064/93‑1 (MQ=255)

                                                ccgGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAggg                                        <  2:3083456/93‑1 (MQ=255)

                                                    gCCTGAGCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAAtt                                    <  2:3415068/93‑1 (MQ=255)

                                                       tGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTAc                                 <  1:34546/93‑1 (MQ=255)

                                                        gAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACa                                <  2:5080469/93‑1 (MQ=255)

                                                        gAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACa                                <  2:2464616/93‑1 (MQ=255)

                                                         aaCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAg                               <  2:4993097/93‑1 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGGCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGGATTTACAGa                              >  1:2645296/1‑93 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              >  1:2922181/1‑93 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              <  2:688975/93‑1 (MQ=255)

                                                          aCCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGa                              <  1:5561449/93‑1 (MQ=255)

                                                           cccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAc                             <  1:2015166/93‑1 (MQ=255)

                                                           cccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAc                             >  1:5673448/1‑93 (MQ=255)

                                                            ccAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACg                            >  1:3932547/1‑93 (MQ=255)

                                                             cAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGt                           >  1:6249712/1‑93 (MQ=255)

                                                              tggttAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGCTCCCCATTGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  1:6301973/89‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  2:636528/93‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          >  1:813163/1‑93 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTa                          <  2:3458566/93‑1 (MQ=255)

                                                              aGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGGAGGGAATTTACAGACGTa                          >  2:3924485/1‑93 (MQ=255)

                                                               ggATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaa                         >  2:4769626/1‑93 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:3886115/93‑1 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:3396910/93‑1 (MQ=255)

                                                                gATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaa                        <  1:919288/93‑1 (MQ=255)

                                                                 aTAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaa                       >  2:2884237/1‑93 (MQ=255)

                                                                  tAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaaa                      <  1:2498051/93‑1 (MQ=255)

                                                                    aGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTaaaaaaa                    >  1:1245847/1‑93 (MQ=255)

                                                                     gCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAag                   <  1:3401817/93‑1 (MQ=255)

                                                                     gCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAag                   <  1:4355201/93‑1 (MQ=255)

                                                                        gTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGt                >  1:5850311/1‑93 (MQ=255)

                                                                         tttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTa               >  1:1056644/1‑93 (MQ=255)

                                                                          ttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAt              <  2:3846066/93‑1 (MQ=255)

                                                                          ttACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAt              <  2:1632841/93‑1 (MQ=255)

                                                                            aCTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGa            <  2:1899139/93‑1 (MQ=255)

                                                                            aCTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGa            <  1:2533946/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  1:3592363/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  2:5876688/93‑1 (MQ=255)

                                                                             cTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAc           <  2:5690329/93‑1 (MQ=255)

                                                                               gtgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGa         <  2:3305142/93‑1 (MQ=255)

                                                                                tgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAt        >  1:4661838/1‑93 (MQ=255)

                                                                                tgtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAt        <  1:4201102/93‑1 (MQ=255)

                                                                                 gtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtt       >  2:563886/1‑93 (MQ=255)

                                                                                 gtTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtt       <  2:1594138/93‑1 (MQ=255)

                                                                                  tttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAttt      <  2:1845499/93‑1 (MQ=255)

                                                                                  tttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAttt      <  2:3374423/93‑1 (MQ=255)

                                                                                   ttGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAtttt     <  1:2282700/93‑1 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGTGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  <  2:590281/93‑1 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  2:3568609/1‑93 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  2:6192140/1‑93 (MQ=255)

                                                                                      gTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGtt  >  1:4094040/1‑93 (MQ=255)

CAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT  >  NC_000913/931177‑931355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCACAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTTAACAA  >  NC_000913/931174‑931360

GCACAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGC                                                                                               <  SRR4302533.5918948/94‑1 (MQ=60)

  ACAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGC                                                                                             >  SRR4302533.5965251/1‑94 (MQ=60)

    AGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCC                                                                                           >  SRR4302533.2692980/1‑94 (MQ=60)

    AGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCC                                                                                           >  SRR4302533.1537507/1‑94 (MQ=60)

       TTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATG                                                                                        <  SRR4302533.5555120/94‑1 (MQ=60)

        TGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGA                                                                                       <  SRR4302533.2810395/94‑1 (MQ=60)

         GCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAG                                                                                      <  SRR4302533.470283/94‑1 (MQ=60)

          CAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGA                                                                                     >  SRR4302533.5229399/1‑94 (MQ=60)

          CAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGA                                                                                     <  SRR4302533.4078934/94‑1 (MQ=60)

          CAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGA                                                                                     >  SRR4302533.630510/1‑94 (MQ=60)

           AGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAT                                                                                    >  SRR4302533.5021108/1‑94 (MQ=60)

           AGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAT                                                                                    >  SRR4302533.2870988/1‑94 (MQ=60)

           AGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAT                                                                                    >  SRR4302533.5935569/1‑94 (MQ=60)

           AGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGACTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGAT                                                                                    >  SRR4302533.5979938/1‑94 (MQ=60)

              TTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCC                                                                                 <  SRR4302533.2494479/94‑1 (MQ=60)

                GGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCA                                                                               <  SRR4302533.2783242/94‑1 (MQ=60)

                     GCGCGGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTT                                                                          <  SRR4302533.3530835/94‑1 (MQ=60)

                       GCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGT                                                                        >  SRR4302533.391247/1‑94 (MQ=60)

                         CGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTG                                                                      >  SRR4302533.2515226/1‑94 (MQ=60)

                           CGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGC                                                                    >  SRR4302533.4327813/1‑94 (MQ=60)

                           CGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGC                                                                    >  SRR4302533.5418804/1‑94 (MQ=60)

                           CGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGC                                                                    >  SRR4302533.1311845/1‑94 (MQ=60)

                           CGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGC                                                                    >  SRR4302533.3921612/1‑94 (MQ=60)

                            GTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCA                                                                   >  SRR4302533.4943637/1‑94 (MQ=60)

                             TAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAG                                                                  <  SRR4302533.2931732/94‑1 (MQ=60)

                             TAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAG                                                                  <  SRR4302533.143740/94‑1 (MQ=60)

                              AGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGA                                                                 >  SRR4302533.1707929/1‑94 (MQ=60)

                               GACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGAC                                                                <  SRR4302533.5266026/94‑1 (MQ=60)

                               GACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGAC                                                                >  SRR4302533.1509002/1‑94 (MQ=60)

                               GACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGAC                                                                <  SRR4302533.2026006/94‑1 (MQ=60)

                               GACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGAC                                                                >  SRR4302533.4198013/1‑94 (MQ=60)

                                ACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACA                                                               <  SRR4302533.296845/94‑1 (MQ=60)

                                 CAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAA                                                              >  SRR4302533.2836191/1‑94 (MQ=60)

                                  AGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAT                                                             <  SRR4302533.95462/94‑1 (MQ=60)

                                  AGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAT                                                             <  SRR4302533.5996015/94‑1 (MQ=60)

                                  AGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAAT                                                             <  SRR4302533.1461207/94‑1 (MQ=60)

                                   GCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATG                                                            <  SRR4302533.3955278/94‑1 (MQ=60)

                                   GCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATG                                                            <  SRR4302533.743514/94‑1 (MQ=60)

                                   GCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATG                                                            <  SRR4302533.3108843/94‑1 (MQ=60)

                                    CAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGG                                                           <  SRR4302533.6182111/94‑1 (MQ=60)

                                     AGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGG                                                          >  SRR4302533.5378010/1‑94 (MQ=60)

                                        GGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAG                                                       <  SRR4302533.3039910/94‑1 (MQ=60)

                                         GTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGG                                                      <  SRR4302533.690100/94‑1 (MQ=60)

                                          TGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGA                                                     <  SRR4302533.5344894/94‑1 (MQ=60)

                                          TGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGA                                                     <  SRR4302533.564594/94‑1 (MQ=60)

                                           GTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGAT                                                    >  SRR4302533.1337501/1‑94 (MQ=60)

                                            TATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTTTTTGGTCGCGCCCATGAGATACCCATAGTTGTTGGCAGACAATGGGCAGGATT                                                   >  SRR4302533.4817037/1‑94 (MQ=60)

                                            TATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATT                                                   >  SRR4302533.4802130/1‑94 (MQ=60)

                                            TATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATT                                                   <  SRR4302533.3707668/94‑1 (MQ=60)

                                            TATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATT                                                   >  SRR4302533.3729136/1‑94 (MQ=60)

                                             ATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTG                                                  >  SRR4302533.1513617/1‑94 (MQ=60)

                                             ATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTG                                                  >  SRR4302533.3000426/1‑94 (MQ=60)

                                              TCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGT                                                 <  SRR4302533.3048423/94‑1 (MQ=60)

                                              TCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGT                                                 >  SRR4302533.1143107/1‑94 (MQ=60)

                                              TCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGT                                                 <  SRR4302533.3048424/94‑1 (MQ=60)

                                              TCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGT                                                 >  SRR4302533.4782276/1‑94 (MQ=60)

                                               CCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTA                                                >  SRR4302533.4639027/1‑94 (MQ=60)

                                                CCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAG                                               <  SRR4302533.2423355/94‑1 (MQ=60)

                                                 CGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGG                                              <  SRR4302533.1972330/94‑1 (MQ=60)

                                                 CGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGG                                              >  SRR4302533.5108564/1‑94 (MQ=60)

                                                 CGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGG                                              >  SRR4302533.2661812/1‑94 (MQ=60)

                                                 CGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGG                                              >  SRR4302533.2909221/1‑94 (MQ=60)

                                                  GCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGG                                             <  SRR4302533.3126153/94‑1 (MQ=60)

                                                   CCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGA                                            >  SRR4302533.4982043/1‑94 (MQ=60)

                                                      GGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATT                                         >  SRR4302533.2346528/1‑94 (MQ=60)

                                                          TGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACA                                     <  SRR4302533.34778/94‑1 (MQ=60)

                                                          TGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACA                                     <  SRR4302533.5149777/94‑1 (MQ=60)

                                                           GAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAG                                    <  SRR4302533.5541021/94‑1 (MQ=60)

                                                            AACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGGCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGGATTTACAGA                                   >  SRR4302533.2661551/1‑94 (MQ=60)

                                                            AACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGA                                   >  SRR4302533.2940074/1‑94 (MQ=60)

                                                             ACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAC                                  >  SRR4302533.5707711/1‑94 (MQ=60)

                                                             ACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAC                                  >  SRR4302533.5093386/1‑94 (MQ=60)

                                                             ACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAC                                  <  SRR4302533.5595056/94‑1 (MQ=60)

                                                             ACCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGAC                                  <  SRR4302533.2878031/94‑1 (MQ=60)

                                                              CCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACG                                 <  SRR4302533.2027578/94‑1 (MQ=60)

                                                              CCCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACG                                 >  SRR4302533.3956553/1‑94 (MQ=60)

                                                               CCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGT                                >  SRR4302533.603576/1‑94 (MQ=60)

                                                               CCAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGT                                >  SRR4302533.6287103/1‑94 (MQ=60)

                                                                CAGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTA                               >  SRR4302533.817923/1‑94 (MQ=60)

                                                                 tggtTAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGCTCCCCATTGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAA                              <  SRR4302533.6339619/90‑1 (MQ=60)

                                                                 AGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAA                              <  SRR4302533.4506726/94‑1 (MQ=60)

                                                                 AGGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAA                              >  SRR4302533.856941/1‑94 (MQ=60)

                                                                 AGGATAAGCAGTTTACTGTGTTTGGCCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAA                              <  SRR4302533.1112762/94‑1 (MQ=60)

                                                                  GGATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAA                             >  SRR4302533.3560404/1‑94 (MQ=60)

                                                                   GATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAA                            <  SRR4302533.924688/94‑1 (MQ=60)

                                                                   GATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAA                            <  SRR4302533.3909823/94‑1 (MQ=60)

                                                                   GATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAA                            <  SRR4302533.3303583/94‑1 (MQ=60)

                                                                   GATAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAA                            <  SRR4302533.3417888/94‑1 (MQ=60)

                                                                   GATAAGCAGTTTACTGTGTGTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAA                            <  SRR4302533.1759207/94‑1 (MQ=60)

                                                                     TAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAA                          <  SRR4302533.2513462/94‑1 (MQ=60)

                                                                     TAAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAA                          >  SRR4302533.2433466/1‑94 (MQ=60)

                                                                      AAGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAA                         >  SRR4302533.1253284/1‑94 (MQ=60)

                                                                       AGCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAG                        >  SRR4302533.3942700/1‑94 (MQ=60)

                                                                        GCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGA                       <  SRR4302533.3422823/94‑1 (MQ=60)

                                                                        GCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGA                       <  SRR4302533.4381489/94‑1 (MQ=60)

                                                                        GCAGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGA                       <  SRR4302533.3775084/94‑1 (MQ=60)

                                                                          AGTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGT                     >  SRR4302533.5885683/1‑94 (MQ=60)

                                                                           GTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTA                    <  SRR4302533.4530101/94‑1 (MQ=60)

                                                                           GTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTA                    >  SRR4302533.1062857/1‑94 (MQ=60)

                                                                           GTTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTA                    <  SRR4302533.2868204/94‑1 (MQ=60)

                                                                            TTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAT                   <  SRR4302533.2069600/94‑1 (MQ=60)

                                                                            TTTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTAT                   <  SRR4302533.1621450/94‑1 (MQ=60)

                                                                             TTACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATG                  <  SRR4302533.6117757/94‑1 (MQ=60)

                                                                              TACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGA                 <  SRR4302533.2589125/94‑1 (MQ=60)

                                                                              TACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGA                 <  SRR4302533.293794/94‑1 (MQ=60)

                                                                              TACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGA                 <  SRR4302533.5412040/94‑1 (MQ=60)

                                                                               ACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAC                <  SRR4302533.2549546/94‑1 (MQ=60)

                                                                               ACTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGAC                >  SRR4302533.1210045/1‑94 (MQ=60)

                                                                                CTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACG               <  SRR4302533.1369973/94‑1 (MQ=60)

                                                                                CTGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACG               <  SRR4302533.3614474/94‑1 (MQ=60)

                                                                                 TGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGA              >  SRR4302533.3472757/1‑94 (MQ=60)

                                                                                 TGTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGA              >  SRR4302533.1716451/1‑94 (MQ=60)

                                                                                  GTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAT             <  SRR4302533.3419210/94‑1 (MQ=60)

                                                                                  GTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAT             <  SRR4302533.1523063/94‑1 (MQ=60)

                                                                                  GTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAT             >  SRR4302533.4690088/1‑94 (MQ=60)

                                                                                  GTGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGAT             <  SRR4302533.5573552/94‑1 (MQ=60)

                                                                                   TGTTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATT            <  SRR4302533.4226522/94‑1 (MQ=60)

                                                                                     TTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTT          <  SRR4302533.4657216/94‑1 (MQ=60)

                                                                                     GTTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTT          <  SRR4302533.5657942/94‑1 (MQ=60)

                                                                                      TTGGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTG         <  SRR4302533.2296830/94‑1 (MQ=60)

                                                                                      TTGGTCGCGCCCATGAGATCCCCATAGTTGTTGACAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTG         >  SRR4302533.5753348/1‑94 (MQ=60)

                                                                                        GGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT       >  SRR4302533.620117/1‑94 (MQ=60)

                                                                                        GGTCGCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTT       >  SRR4302533.4118962/1‑94 (MQ=60)

                                                                                            GCGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTTAACA   >  SRR4302533.2488882/1‑94 (MQ=60)

                                                                                            GCGCCCAAGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTCATAACA   >  SRR4302533.491037/1‑94 (MQ=60)

                                                                                             CGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTTAACAA  <  SRR4302533.5464601/94‑1 (MQ=60)

                                                                                             CGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTTAACAA  >  SRR4302533.2993190/1‑94 (MQ=60)

GCACAGGTTGCAGGTTGGCGCGCGCCGCGTAGACAGCAGCGGTGTATCCCGCCGGGCCTGAACCCAGGATAAGCAGTTTACTGTGTTTGGTCGTGCCCATGAGATCCCCATAGTTGTTGGCAGACAATGGGCAGGATTGTAGGGAATTTACAGACGTAAAAAAAGAGTATGACGATTTTGTTAACAA  >  NC_000913/931174‑931360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`