Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	979,388	T→C	R1280R (CGT→CGC)	mukB →	MukB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	979,388	0	T	C	100.0%	685.0 / NA	212	R1280R (CGT→CGC)	mukB	MukB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (108/104); total (108/104)

Only 100 of 227 total aligned reads displayed.

CGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGTGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGA  >  NC_000913/979298‑979477

cgAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGa                                                                                         >  1:2089900/1‑93 (MQ=255)

  aGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGaaa                                                                                       <  1:2686/93‑1 (MQ=255)

  aGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGaaa                                                                                       <  1:1511778/93‑1 (MQ=255)

   gCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAac                                                                                      >  2:2113579/1‑93 (MQ=255)

   gCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAac                                                                                      <  2:4506609/93‑1 (MQ=255)

    cAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacg                                                                                     <  1:5057625/93‑1 (MQ=255)

    cAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacg                                                                                     <  1:5568157/93‑1 (MQ=255)

     aGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgc                                                                                    >  2:798551/1‑93 (MQ=255)

      gAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgca                                                                                   >  2:3027949/1‑93 (MQ=255)

      gAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgca                                                                                   <  2:1711456/93‑1 (MQ=255)

       aaCCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgcac                                                                                  <  2:4388931/93‑1 (MQ=255)

        aCCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgcacg                                                                                 <  2:3885773/93‑1 (MQ=255)

        aCCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAacgcacg                                                                                 >  2:5922069/1‑93 (MQ=255)

          cgtatccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGcc                                                                               >  1:2357918/1‑93 (MQ=255)

           gtatccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCa                                                                              <  2:4035900/93‑1 (MQ=255)

            tatccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACTTGCGCGAAACGCACGCCAt                                                                             <  2:6154936/93‑1 (MQ=255)

            tatccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCAt                                                                             >  1:4585844/1‑93 (MQ=255)

            tatccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCAt                                                                             >  1:3500006/1‑93 (MQ=255)

             atccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATg                                                                            <  2:582766/93‑1 (MQ=255)

             atccgtatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATg                                                                            >  2:2262227/1‑93 (MQ=255)

                  tatGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACt                                                                       >  1:1738264/1‑93 (MQ=255)

                   atGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGACACGCACGCCATGCTACTg                                                                      >  1:894677/1‑93 (MQ=255)

                   atGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTg                                                                      >  2:3406816/1‑93 (MQ=255)

                       tCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGAtg                                                                  >  1:5323604/1‑93 (MQ=255)

                        cAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGAtgt                                                                 <  1:4228092/93‑1 (MQ=255)

                         aaCCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGAtgtg                                                                >  2:2964159/1‑93 (MQ=255)

                          aCCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGc                                                               >  1:1641928/1‑93 (MQ=255)

                          aCCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGc                                                               <  2:3438364/93‑1 (MQ=255)

                           ccAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGct                                                              >  2:5966962/1‑93 (MQ=255)

                           ccAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGct                                                              >  2:3591466/1‑93 (MQ=255)

                           ccAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGct                                                              >  2:5568366/1‑93 (MQ=255)

                            cAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctc                                                             <  2:5888384/93‑1 (MQ=255)

                             aGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctct                                                            >  1:3194363/1‑93 (MQ=255)

                             aGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctct                                                            >  2:2137131/1‑93 (MQ=255)

                             aGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctct                                                            >  1:989814/1‑93 (MQ=255)

                              ggggTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctctc                                                           <  1:4829700/93‑1 (MQ=255)

                              ggggTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctctc                                                           >  1:907489/1‑93 (MQ=255)

                               gggTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctctct                                                          >  1:381577/1‑93 (MQ=255)

                               gggTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGctctct                                                          <  2:1691673/93‑1 (MQ=255)

                                 gTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGa                                                        >  2:3749682/1‑93 (MQ=255)

                                 gTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGa                                                        <  2:765490/93‑1 (MQ=255)

                                  ttGCAGAACGTATCGTTTGGTCAGGTGAGCAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGaa                                                       <  1:6138685/93‑1 (MQ=255)

                                  ttGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGaa                                                       <  1:324761/93‑1 (MQ=255)

                                   tGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAAc                                                      <  2:3558580/93‑1 (MQ=255)

                                     cAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAg                                                    <  1:2021322/93‑1 (MQ=255)

                                      aGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGc                                                   >  2:3169605/1‑93 (MQ=255)

                                      aGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGc                                                   <  2:5221511/93‑1 (MQ=255)

                                       gAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCa                                                  <  1:5792760/93‑1 (MQ=255)

                                       gAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCa                                                  <  1:5271974/93‑1 (MQ=255)

                                       gAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCa                                                  >  1:2171032/1‑93 (MQ=255)

                                           gTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGag                                              >  1:1025723/1‑93 (MQ=255)

                                           gTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGag                                              >  1:6187384/1‑93 (MQ=255)

                                           gTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGag                                              >  1:3596563/1‑93 (MQ=255)

                                           gTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGAGCTCTCTGAACAGCACGag                                              >  2:4781246/1‑93 (MQ=255)

                                            tATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagc                                             >  2:3272577/1‑93 (MQ=255)

                                            tATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagc                                             >  2:4527144/1‑93 (MQ=255)

                                            tATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagc                                             >  1:4557799/1‑93 (MQ=255)

                                            tATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagc                                             <  1:2614575/93‑1 (MQ=255)

                                             aTCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagca                                            <  2:1597201/93‑1 (MQ=255)

                                             aTCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagca                                            <  2:282277/93‑1 (MQ=255)

                                              tCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGagcag                                           <  1:5719203/93‑1 (MQ=255)

                                               cGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATACTACTGGATGTGCTCTCTGAACAGCACGagcagc                                          >  2:2809688/1‑93 (MQ=255)

                                                 tttGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCAt                                        >  1:733515/1‑93 (MQ=255)

                                                  ttGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATc                                       <  2:2912247/93‑1 (MQ=255)

                                                  ttGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATc                                       <  2:2431515/93‑1 (MQ=255)

                                                   tGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCa                                      <  1:439369/93‑1 (MQ=255)

                                                    ggTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAg                                     >  2:5325685/1‑93 (MQ=255)

                                                     gTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAgg                                    >  2:4911060/1‑93 (MQ=255)

                                                     gTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAgg                                    >  1:2266286/1‑93 (MQ=255)

                                                        aGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATc                                 >  2:2213359/1‑93 (MQ=255)

                                                        aGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATc                                 <  1:2194598/93‑1 (MQ=255)

                                                         ggTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCt                                >  1:1167693/1‑93 (MQ=255)

                                                            gAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGtt                             >  2:5998288/1‑93 (MQ=255)

                                                              aCAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATGTGTTTa                           >  1:2243688/1‑93 (MQ=255)

                                                                aGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAAc                         >  2:422999/1‑93 (MQ=255)

                                                                   gtgcgtCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAga                      >  1:1351828/1‑92 (MQ=255)

                                                                    tgcgtCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCa                     >  2:206533/1‑93 (MQ=255)

                                                                      cgtCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAAc                   <  2:1155897/93‑1 (MQ=255)

                                                                      cgtCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAAc                   <  2:5544058/93‑1 (MQ=255)

                                                                       gtCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAAcc                  >  2:3124467/1‑93 (MQ=255)

                                                                        tctcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCg                 <  1:5198325/93‑1 (MQ=255)

                                                                        tctcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGAAGCATCAGGATCTGTTTAACAGCAACCg                 >  1:1664093/1‑93 (MQ=255)

                                                                         ctcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGt                >  1:290067/1‑93 (MQ=255)

                                                                         ctcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGt                <  1:698528/93‑1 (MQ=255)

                                                                         ctcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGt                >  1:4721420/1‑93 (MQ=255)

                                                                          tcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGtt               <  2:1904737/93‑1 (MQ=255)

                                                                          tcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGtt               >  1:2829123/1‑93 (MQ=255)

                                                                          tcAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGtt               >  1:1004275/1‑93 (MQ=255)

                                                                           cAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGttt              <  1:6056886/93‑1 (MQ=255)

                                                                            aacgtgaacgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTg             >  1:4280734/1‑93 (MQ=255)

                                                                            aacgtgaacgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTg             <  1:4125587/93‑1 (MQ=255)

                                                                                  aacgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTtc       <  2:1353098/93‑1 (MQ=255)

                                                                                   acgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTtct      >  2:3642159/1‑93 (MQ=255)

                                                                                   acgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTtct      >  1:3302560/1‑93 (MQ=255)

                                                                                   acgtgCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGGTTAACAGCAACCGTTTGACCTtct      >  1:3087139/1‑93 (MQ=255)

                                                                                    cgtgcgcgAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTtctc     <  1:6240876/93‑1 (MQ=255)

                                                                                     gtgcgcgAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCg    <  2:4635768/93‑1 (MQ=255)

                                                                                     gtgcgcgAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCg    >  2:4609947/1‑93 (MQ=255)

                                                                                       gcgcgAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGa  >  2:4309544/1‑93 (MQ=255)

                                                                                       gcgcgAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGa  <  2:926153/93‑1 (MQ=255)

CGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGTGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGA  >  NC_000913/979298‑979477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGCGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGTGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGCG  >  NC_000913/979295‑979481

GCGCGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGC                                                                                               >  SRR4302533.3084162/1‑94 (MQ=60)

  GCGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGA                                                                                             >  SRR4302533.2102768/1‑94 (MQ=60)

     AGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAAC                                                                                          <  SRR4302533.2707/94‑1 (MQ=60)

     AGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAAC                                                                                          >  SRR4302533.165324/1‑94 (MQ=60)

     AGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAAC                                                                                          <  SRR4302533.1520889/94‑1 (MQ=60)

       CAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCCACGTGGACGTGCGCGCAACGC                                                                                        >  SRR4302533.2275381/1‑94 (MQ=60)

       CAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGC                                                                                        <  SRR4302533.5088191/94‑1 (MQ=60)

       CAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGC                                                                                        >  SRR4302533.236887/1‑94 (MQ=60)

       CAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGC                                                                                        <  SRR4302533.5601814/94‑1 (MQ=60)

        AGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCA                                                                                       >  SRR4302533.1895763/1‑94 (MQ=60)

         GAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCAC                                                                                      <  SRR4302533.4864513/94‑1 (MQ=60)

           ACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGC                                                                                    >  SRR4302533.4334126/1‑94 (MQ=60)

           ACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGC                                                                                    >  SRR4302533.1093245/1‑94 (MQ=60)

            CCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCC                                                                                   >  SRR4302533.2372493/1‑94 (MQ=60)

             CGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCA                                                                                  >  SRR4302533.2184072/1‑94 (MQ=60)

              GTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCAT                                                                                 >  SRR4302533.4613624/1‑94 (MQ=60)

              GTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCAT                                                                                 >  SRR4302533.3521592/1‑94 (MQ=60)

               TATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATG                                                                                <  SRR4302533.550581/94‑1 (MQ=60)

               TATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATG                                                                                >  SRR4302533.2398708/1‑94 (MQ=60)

                ATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGC                                                                               <  SRR4302533.5985544/94‑1 (MQ=60)

                  CCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTA                                                                             >  SRR4302533.5313463/1‑94 (MQ=60)

                  CCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTA                                                                             >  SRR4302533.4161499/1‑94 (MQ=60)

                    GTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACT                                                                           >  SRR4302533.1748809/1‑94 (MQ=60)

                     TATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGACACGCACGCCATGCTACTG                                                                          >  SRR4302533.899935/1‑94 (MQ=60)

                        GCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGAT                                                                       >  SRR4302533.302637/1‑94 (MQ=60)

                         CTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATG                                                                      >  SRR4302533.3568359/1‑94 (MQ=60)

                         CTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATG                                                                      >  SRR4302533.5355507/1‑94 (MQ=60)

                         CTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATG                                                                      <  SRR4302533.1581778/94‑1 (MQ=60)

                           CAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTG                                                                    <  SRR4302533.4253654/94‑1 (MQ=60)

                            AACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGC                                                                   >  SRR4302533.1651874/1‑94 (MQ=60)

                              CCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTC                                                                 >  SRR4302533.2231907/1‑94 (MQ=60)

                              CCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTC                                                                 >  SRR4302533.3480415/1‑94 (MQ=60)

                              CCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTC                                                                 >  SRR4302533.5072698/1‑94 (MQ=60)

                              CCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTC                                                                 >  SRR4302533.2898407/1‑94 (MQ=60)

                               CAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCT                                                                >  SRR4302533.3214015/1‑94 (MQ=60)

                               CAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCT                                                                >  SRR4302533.995605/1‑94 (MQ=60)

                               CAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCT                                                                >  SRR4302533.4457697/1‑94 (MQ=60)

                               CAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCT                                                                <  SRR4302533.4658956/94‑1 (MQ=60)

                                AGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTC                                                               >  SRR4302533.912811/1‑94 (MQ=60)

                                 GGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCT                                                              >  SRR4302533.383879/1‑94 (MQ=60)

                                 GGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCT                                                              <  SRR4302533.637950/94‑1 (MQ=60)

                                 GGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCT                                                              <  SRR4302533.4858969/94‑1 (MQ=60)

                                    GTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAA                                                           <  SRR4302533.1178463/94‑1 (MQ=60)

                                     TTGCAGAACGTATCGTTTGGTCAGGTGAGCAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAAC                                                          <  SRR4302533.6175663/94‑1 (MQ=60)

                                     TTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAAC                                                          <  SRR4302533.326742/94‑1 (MQ=60)

                                     TTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAAC                                                          >  SRR4302533.1400489/1‑94 (MQ=60)

                                        CAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGC                                                       <  SRR4302533.2033771/94‑1 (MQ=60)

                                        CAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGC                                                       <  SRR4302533.2656866/94‑1 (MQ=60)

                                         AGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCA                                                      >  SRR4302533.2184385/1‑94 (MQ=60)

                                          GAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCAC                                                     <  SRR4302533.5303589/94‑1 (MQ=60)

                                          GAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCAC                                                     <  SRR4302533.5827756/94‑1 (MQ=60)

                                           AACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACG                                                    <  SRR4302533.5268416/94‑1 (MQ=60)

                                             CGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAG                                                  <  SRR4302533.3298908/94‑1 (MQ=60)

                                             CGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAG                                                  >  SRR4302533.1031750/1‑94 (MQ=60)

                                             CGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAG                                                  >  SRR4302533.3618693/1‑94 (MQ=60)

                                             CGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAG                                                  >  SRR4302533.6224523/1‑94 (MQ=60)

                                              GTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGC                                                 <  SRR4302533.5588984/94‑1 (MQ=60)

                                              GTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGC                                                 >  SRR4302533.4585439/1‑94 (MQ=60)

                                              GTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGC                                                 >  SRR4302533.3893002/1‑94 (MQ=60)

                                               TATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCA                                                <  SRR4302533.2630624/94‑1 (MQ=60)

                                                ATCGTGTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCAGGCTACTGGATGTGCTCTCTGAACAGCACGAGCAG                                               <  SRR4302533.3188127/94‑1 (MQ=60)

                                                 TCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGC                                              <  SRR4302533.5753738/94‑1 (MQ=60)

                                                 TCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGC                                              <  SRR4302533.395850/94‑1 (MQ=60)

                                                  CGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTGTCTGAACAGCACGAGCAGCA                                             <  SRR4302533.2043081/94‑1 (MQ=60)

                                                   GTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCAT                                            >  SRR4302533.737831/1‑94 (MQ=60)

                                                     TTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCAAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCA                                          <  SRR4302533.4775432/94‑1 (MQ=60)

                                                      TGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAG                                         <  SRR4302533.441989/94‑1 (MQ=60)

                                                       GGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGG                                        >  SRR4302533.2280305/1‑94 (MQ=60)

                                                       GGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGG                                        <  SRR4302533.689670/94‑1 (MQ=60)

                                                       GGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGG                                        <  SRR4302533.5619299/94‑1 (MQ=60)

                                                        GTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGA                                       >  SRR4302533.707944/1‑94 (MQ=60)

                                                         TCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGAT                                      <  SRR4302533.2242514/94‑1 (MQ=60)

                                                         TCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGAT                                      <  SRR4302533.4580373/94‑1 (MQ=60)

                                                         TCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGAT                                      <  SRR4302533.1942638/94‑1 (MQ=60)

                                                           AGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCT                                    >  SRR4302533.1174699/1‑94 (MQ=60)

                                                           AGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCT                                    <  SRR4302533.2208122/94‑1 (MQ=60)

                                                           AGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCT                                    >  SRR4302533.575474/1‑94 (MQ=60)

                                                                AACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATGTGTTTA                               >  SRR4302533.2257555/1‑94 (MQ=60)

                                                                AACAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTA                               >  SRR4302533.3487195/1‑94 (MQ=60)

                                                                  CAGCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAAC                             <  SRR4302533.6193313/94‑1 (MQ=60)

                                                                    GCGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAG                           <  SRR4302533.1694475/94‑1 (MQ=60)

                                                                     CGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGC                          <  SRR4302533.6145999/94‑1 (MQ=60)

                                                                     CGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGC                          <  SRR4302533.5098866/94‑1 (MQ=60)

                                                                     CGTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGA                          >  SRR4302533.1359960/1‑94 (MQ=60)

                                                                      GTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCA                         <  SRR4302533.1508621/94‑1 (MQ=60)

                                                                      GTGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCA                         <  SRR4302533.1013391/94‑1 (MQ=60)

                                                                       TGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAA                        <  SRR4302533.984298/94‑1 (MQ=60)

                                                                       TGCGTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAA                        <  SRR4302533.922751/94‑1 (MQ=60)

                                                                          GTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCG                     >  SRR4302533.2763883/1‑94 (MQ=60)

                                                                          GTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCG                     >  SRR4302533.3809195/1‑94 (MQ=60)

                                                                          GTCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGAAGCATCAGGATCTGTTTAACAGCAACCG                     >  SRR4302533.1674151/1‑94 (MQ=60)

                                                                          GTCGCAACGTGAACGTGCGCGAAGCGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCG                     <  SRR4302533.2189459/94‑1 (MQ=60)

                                                                           TCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGT                    <  SRR4302533.4611002/94‑1 (MQ=60)

                                                                           TCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGT                    <  SRR4302533.5229672/94‑1 (MQ=60)

                                                                           TCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGT                    >  SRR4302533.291833/1‑94 (MQ=60)

                                                                           TCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGT                    >  SRR4302533.6240353/1‑94 (MQ=60)

                                                                           TCTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGT                    >  SRR4302533.4750047/1‑94 (MQ=60)

                                                                            CTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTT                   <  SRR4302533.702660/94‑1 (MQ=60)

                                                                            CTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTT                   >  SRR4302533.2846530/1‑94 (MQ=60)

                                                                            CTCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTT                   >  SRR4302533.1010148/1‑94 (MQ=60)

                                                                             TCAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTT                  >  SRR4302533.845626/1‑94 (MQ=60)

                                                                              CAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTG                 <  SRR4302533.6093561/94‑1 (MQ=60)

                                                                              CAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTG                 >  SRR4302533.4306469/1‑94 (MQ=60)

                                                                              CAACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTA                 >  SRR4302533.4276858/1‑94 (MQ=60)

                                                                               AACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGA                <  SRR4302533.4150631/94‑1 (MQ=60)

                                                                               AACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGA                <  SRR4302533.912286/94‑1 (MQ=60)

                                                                                ACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGAC               <  SRR4302533.3228966/94‑1 (MQ=60)

                                                                                ACGTGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGAC               <  SRR4302533.5906580/94‑1 (MQ=60)

                                                                                   TGAACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTT            >  SRR4302533.2611109/1‑94 (MQ=60)

                                                                                     AACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCT          >  SRR4302533.3322952/1‑94 (MQ=60)

                                                                                     AACGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGGTTAACAGCAACCGTTTGACCTTCT          >  SRR4302533.3106120/1‑94 (MQ=60)

                                                                                       CGTGCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCG        <  SRR4302533.6278243/94‑1 (MQ=60)

                                                                                          GCGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAA     <  SRR4302533.3062588/94‑1 (MQ=60)

                                                                                           CGCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAG    >  SRR4302533.6087064/1‑94 (MQ=60)

                                                                                            GCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGC   <  SRR4302533.623348/94‑1 (MQ=60)

                                                                                            GCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGC   <  SRR4302533.5409204/94‑1 (MQ=60)

                                                                                            GCGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGC   <  SRR4302533.6175603/94‑1 (MQ=60)

                                                                                             CGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGCG  >  SRR4302533.4617985/1‑94 (MQ=60)

                                                                                             CGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGCG  >  SRR4302533.5442961/1‑94 (MQ=60)

GCGCGAGCAGAACCGTATCCGTATGCTCAACCAGGGGTTGCAGAACGTATCGTTTGGTCAGGTGAACAGCGTGCGTCTCAACGTGAACGTGCGTGAAACGCACGCCATGCTACTGGATGTGCTCTCTGAACAGCACGAGCAGCATCAGGATCTGTTTAACAGCAACCGTTTGACCTTCTCGGAAGCG  >  NC_000913/979295‑979481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`