Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 999,571 A→G Q378R (CAG→CGG)  ycbS → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913999,5710AG100.0% 685.1 / NA 211Q378R (CAG→CGG) ycbSputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (98/113);  total (98/113)

Only 100 of 226 total aligned reads displayed.

CGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACC  >  NC_000913/999481‑999660
                                                                                          |                                                                                         
cGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCggg                                                                                         <  2:855581/93‑1 (MQ=255)
cGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCggg                                                                                         <  1:4989711/93‑1 (MQ=255)
  ttCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGgag                                                                                       <  1:66732/93‑1 (MQ=255)
   tctcCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGgaga                                                                                      <  1:5541865/93‑1 (MQ=255)
   tctcCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGgaga                                                                                      <  2:1586824/93‑1 (MQ=255)
     tcCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGc                                                                                    >  1:636538/1‑93 (MQ=255)
     tcCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGc                                                                                    >  1:4011375/1‑93 (MQ=255)
     tcCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGc                                                                                    >  2:3575294/1‑93 (MQ=255)
        aGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCaaa                                                                                 <  1:3925183/93‑1 (MQ=255)
        aGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCaaa                                                                                 >  1:957276/1‑93 (MQ=255)
         gtgtGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAt                                                                                >  2:5189704/1‑93 (MQ=255)
           gtgCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAttt                                                                              <  2:1242506/93‑1 (MQ=255)
           gtgCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAttt                                                                              <  1:1740595/93‑1 (MQ=255)
            tgCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTg                                                                             <  2:4477304/93‑1 (MQ=255)
            tgCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTg                                                                             <  1:1842542/93‑1 (MQ=255)
               cATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGccc                                                                          >  2:558064/1‑93 (MQ=255)
               cATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGccc                                                                          >  1:5362955/1‑93 (MQ=255)
               cATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGccc                                                                          <  2:2147301/93‑1 (MQ=255)
                aTTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCa                                                                         <  1:5021903/93‑1 (MQ=255)
                aTTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCa                                                                         <  2:932598/93‑1 (MQ=255)
                    cTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGcc                                                                     >  1:1411400/1‑93 (MQ=255)
                     tCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCa                                                                    <  2:2438523/93‑1 (MQ=255)
                     tCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCa                                                                    <  1:3353943/93‑1 (MQ=255)
                       cAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACg                                                                  >  2:3617516/1‑93 (MQ=255)
                         gCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGtt                                                                >  1:4345977/1‑93 (MQ=255)
                           gTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGc                                                              <  1:3098007/93‑1 (MQ=255)
                             cAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAg                                                            <  2:2210288/93‑1 (MQ=255)
                             cAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAg                                                            <  2:3166828/93‑1 (MQ=255)
                             cAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAg                                                            >  2:4713992/1‑93 (MQ=255)
                              aGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGt                                                           <  2:3955737/93‑1 (MQ=255)
                               ggggCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTg                                                          <  1:2521626/93‑1 (MQ=255)
                                   cGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGc                                                      >  2:1970437/1‑93 (MQ=255)
                                      aTCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGa                                                   >  2:6304590/1‑93 (MQ=255)
                                       tCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGGGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGAc                                                  <  1:4439033/93‑1 (MQ=255)
                                         aaaTACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCg                                                >  1:1984260/1‑93 (MQ=255)
                                          aaTACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGt                                               <  2:4888750/93‑1 (MQ=255)
                                           aTACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTg                                              <  2:2169375/93‑1 (MQ=255)
                                            tACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTgg                                             >  1:1110305/1‑93 (MQ=255)
                                            tACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTgg                                             <  1:241505/93‑1 (MQ=255)
                                                cgGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGaa                                         <  1:5955843/93‑1 (MQ=255)
                                                     acacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGAcc                                    <  1:5181781/93‑1 (MQ=255)
                                                     acacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGAcc                                    <  1:353833/93‑1 (MQ=255)
                                                     acacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGACGGACCGTGGGGAACGAcc                                    <  2:6141672/93‑1 (MQ=255)
                                                      cacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCt                                   <  1:2377356/93‑1 (MQ=255)
                                                      cacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCt                                   <  2:3398492/93‑1 (MQ=255)
                                                      cacTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCt                                   <  1:3725668/93‑1 (MQ=255)
                                                       acTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTg                                  >  1:4674709/1‑93 (MQ=255)
                                                       acTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTg                                  <  1:3058103/93‑1 (MQ=255)
                                                        ctagCGAAATACAGAACCAATAGTAATGAACAGCGGGCGAGCAAATTTGCCCAGGCCACGCTGCAGAGGGGCGGACCGTGGGGGACGACCTgg                                 >  2:3442044/4‑93 (MQ=255)
                                                        cTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTgg                                 <  2:4226011/93‑1 (MQ=255)
                                                         tGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGt                                >  2:2611252/1‑93 (MQ=255)
                                                          ggCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAACTTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTCGGGAACGACCTGGtt                               >  1:181039/1‑92 (MQ=255)
                                                          ggCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTa                               <  1:612634/93‑1 (MQ=255)
                                                          ggCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTa                               <  1:1052600/93‑1 (MQ=255)
                                                          ggCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTa                               <  2:3688539/93‑1 (MQ=255)
                                                             gAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtgg                            >  1:1639629/1‑93 (MQ=255)
                                                             gAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtgg                            <  2:526707/93‑1 (MQ=255)
                                                              aaaTACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggt                           <  2:5702513/93‑1 (MQ=255)
                                                              aaaTACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggg                           >  2:782267/1‑92 (MQ=255)
                                                                 tACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggt                        >  1:4410290/1‑93 (MQ=255)
                                                                 tACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCAAGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggg                        >  2:4849154/1‑92 (MQ=255)
                                                                 tACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAGTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggt                        <  1:5520543/93‑1 (MQ=255)
                                                                   cAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggtgg                      <  1:4699298/93‑1 (MQ=255)
                                                                   cAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggtgg                      <  1:5335214/93‑1 (MQ=255)
                                                                   cAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggtgg                      >  1:1533510/1‑93 (MQ=255)
                                                                   cAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAtggtggtgg                      >  2:580291/1‑93 (MQ=255)
                                                                     gAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGAc                    >  2:4407131/1‑93 (MQ=255)
                                                                     gAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGAc                    <  1:4113367/93‑1 (MQ=255)
                                                                     gAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGAc                    >  2:2812787/1‑93 (MQ=255)
                                                                      aaCCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACa                   >  2:4395495/1‑93 (MQ=255)
                                                                       aCCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACaa                  >  1:2088949/1‑93 (MQ=255)
                                                                       aCCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACaa                  >  2:2774303/1‑93 (MQ=255)
                                                                        ccAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAat                 >  2:3652894/1‑93 (MQ=255)
                                                                        ccAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAat                 >  1:3342102/1‑93 (MQ=255)
                                                                        ccAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAat                 <  2:2358091/93‑1 (MQ=255)
                                                                         cAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAata                >  2:5373786/1‑93 (MQ=255)
                                                                         cAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAata                <  1:1554460/93‑1 (MQ=255)
                                                                         cAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAata                <  1:646529/93‑1 (MQ=255)
                                                                          aaTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAatat               <  1:3773626/93‑1 (MQ=255)
                                                                          aaTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAatat               >  2:824512/1‑93 (MQ=255)
                                                                          aaTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAatat               <  1:842226/93‑1 (MQ=255)
                                                                          aaTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAatat               <  2:5026804/93‑1 (MQ=255)
                                                                           aTAGTAATGAACAGGGGGAGAGCAATTTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATg              <  2:3118458/93‑1 (MQ=255)
                                                                           aTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATg              <  2:3939701/93‑1 (MQ=255)
                                                                           aTAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATg              >  2:447265/1‑93 (MQ=255)
                                                                            tAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGc             >  2:1104906/1‑93 (MQ=255)
                                                                            tAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGc             >  2:1482584/1‑93 (MQ=255)
                                                                             aGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCt            <  2:6124742/93‑1 (MQ=255)
                                                                             aGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCt            <  1:1517176/93‑1 (MQ=255)
                                                                              gTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTg           <  1:5067852/93‑1 (MQ=255)
                                                                               tAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGa          <  2:1829889/93‑1 (MQ=255)
                                                                                  tGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAata       >  1:889494/1‑93 (MQ=255)
                                                                                  tGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAata       <  2:6184926/93‑1 (MQ=255)
                                                                                  tGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAata       <  1:5733631/93‑1 (MQ=255)
                                                                                   gAACAGCGGGAGACCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAatat      <  2:120422/93‑1 (MQ=255)
                                                                                    aaCAGCGGGAGAGCAAATTTGCCCAGTCAACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATAtt     <  1:5699239/93‑1 (MQ=255)
                                                                                    aaCAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATAtt     >  2:4647524/1‑93 (MQ=255)
                                                                                    aaCAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATAtt     >  1:1088549/1‑93 (MQ=255)
                                                                                      cagcggGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTAc   <  2:132333/93‑1 (MQ=255)
                                                                                       agcggGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTAcc  <  1:6246117/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACC  >  NC_000913/999481‑999660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACCGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTGC  >  NC_000913/999479‑999664
                                                                                            |                                                                                             
ACCGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGG                                                                                              <  SRR4302533.5240544/94‑1 (MQ=60)
ACCGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGG                                                                                              >  SRR4302533.4774282/1‑94 (MQ=60)
  CGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGA                                                                                            <  SRR4302533.683709/94‑1 (MQ=60)
  CGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGA                                                                                            <  SRR4302533.5019962/94‑1 (MQ=60)
   GTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAG                                                                                           <  SRR4302533.2846081/94‑1 (MQ=60)
   GTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAAAAGCGGGAG                                                                                           >  SRR4302533.1318563/1‑94 (MQ=60)
    TTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGA                                                                                          <  SRR4302533.67167/94‑1 (MQ=60)
    TTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGA                                                                                          >  SRR4302533.2061700/1‑94 (MQ=60)
     TCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAG                                                                                         <  SRR4302533.1810213/94‑1 (MQ=60)
     TCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAG                                                                                         <  SRR4302533.5575334/94‑1 (MQ=60)
      CTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGC                                                                                        >  SRR4302533.640285/1‑94 (MQ=60)
      CTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGC                                                                                        >  SRR4302533.4392503/1‑94 (MQ=60)
      CTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGC                                                                                        >  SRR4302533.4035797/1‑94 (MQ=60)
       TCCGGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCA                                                                                       <  SRR4302533.6216393/94‑1 (MQ=60)
         CAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAA                                                                                     >  SRR4302533.1689645/1‑94 (MQ=60)
         CAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAA                                                                                     >  SRR4302533.962905/1‑94 (MQ=60)
          AGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAT                                                                                    <  SRR4302533.3949151/94‑1 (MQ=60)
           GTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATT                                                                                   <  SRR4302533.4478374/94‑1 (MQ=60)
           GTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATT                                                                                   >  SRR4302533.5378880/1‑94 (MQ=60)
             GTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTG                                                                                 <  SRR4302533.1751150/94‑1 (MQ=60)
             GTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTG                                                                                 <  SRR4302533.3969397/94‑1 (MQ=60)
              TGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGC                                                                                <  SRR4302533.1853778/94‑1 (MQ=60)
                CCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCC                                                                              >  SRR4302533.5395164/1‑94 (MQ=60)
                 CATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCA                                                                             >  SRR4302533.2474290/1‑94 (MQ=60)
                  ATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAG                                                                            <  SRR4302533.5052316/94‑1 (MQ=60)
                    TACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGC                                                                          >  SRR4302533.913394/1‑94 (MQ=60)
                     ACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCC                                                                         <  SRR4302533.5714201/94‑1 (MQ=60)
                     ACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCC                                                                         >  SRR4302533.1419933/1‑94 (MQ=60)
                      CTCTAGCGTCAGGGGCGACTCAAATACGCGGTGACACTGGCGAAATACAGAACCCATAGTAATGAACAGCCGGAGCGAAAATTTGCCTAGGCCA                                                                        >  SRR4302533.3434891/1‑94 (MQ=60)
                      CTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCA                                                                        >  SRR4302533.3434893/1‑94 (MQ=60)
                       TCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCAC                                                                       <  SRR4302533.3374669/94‑1 (MQ=60)
                          AGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTT                                                                    <  SRR4302533.154535/94‑1 (MQ=60)
                          AGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTT                                                                    >  SRR4302533.4372173/1‑94 (MQ=60)
                          AGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTT                                                                    >  SRR4302533.1734094/1‑94 (MQ=60)
                            CGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGC                                                                  >  SRR4302533.4392606/1‑94 (MQ=60)
                             GTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCA                                                                 <  SRR4302533.3117053/94‑1 (MQ=60)
                                 GGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGG                                                             <  SRR4302533.2537162/94‑1 (MQ=60)
                                  GGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGG                                                            <  SRR4302533.5906540/94‑1 (MQ=60)
                                  GGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGG                                                            <  SRR4302533.851656/94‑1 (MQ=60)
                                    GCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGC                                                          >  SRR4302533.5109063/1‑94 (MQ=60)
                                     CGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCG                                                         >  SRR4302533.4355668/1‑94 (MQ=60)
                                      GAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGG                                                        >  SRR4302533.64489/1‑94 (MQ=60)
                                        ATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGAC                                                      <  SRR4302533.620660/94‑1 (MQ=60)
                                        ATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGAC                                                      >  SRR4302533.1833903/1‑94 (MQ=60)
                                         TCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGGGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACC                                                     <  SRR4302533.4465866/94‑1 (MQ=60)
                                          CAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCG                                                    <  SRR4302533.1064297/94‑1 (MQ=60)
                                          CAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCG                                                    >  SRR4302533.1996400/1‑94 (MQ=60)
                                          CAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCG                                                    >  SRR4302533.3334698/1‑94 (MQ=60)
                                            AATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTG                                                  <  SRR4302533.661323/94‑1 (MQ=60)
                                             ATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGG                                                 >  SRR4302533.2401243/1‑94 (MQ=60)
                                             ATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGG                                                 >  SRR4302533.1116892/1‑94 (MQ=60)
                                              TACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGG                                                <  SRR4302533.243002/94‑1 (MQ=60)
                                               ACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGG                                               >  SRR4302533.3082712/1‑94 (MQ=60)
                                                  CGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAAC                                            >  SRR4302533.1635026/1‑94 (MQ=60)
                                                  CGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAAC                                            <  SRR4302533.3753197/94‑1 (MQ=60)
                                                  CGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAAC                                            <  SRR4302533.5991870/94‑1 (MQ=60)
                                                  CGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGAGGGGAAC                                            <  SRR4302533.5471135/94‑1 (MQ=60)
                                                   GGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACG                                           <  SRR4302533.3905216/94‑1 (MQ=60)
                                                     TGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGAC                                         >  SRR4302533.2088527/1‑94 (MQ=60)
                                                      GACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACC                                        <  SRR4302533.2293491/94‑1 (MQ=60)
                                                       ACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCT                                       <  SRR4302533.355991/94‑1 (MQ=60)
                                                       ACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCT                                       <  SRR4302533.5213069/94‑1 (MQ=60)
                                                       ACACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCT                                       <  SRR4302533.4136543/94‑1 (MQ=60)
                                                        CACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTG                                      >  SRR4302533.4703035/1‑94 (MQ=60)
                                                        CACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTG                                      <  SRR4302533.3748526/94‑1 (MQ=60)
                                                        CACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTG                                      <  SRR4302533.2392065/94‑1 (MQ=60)
                                                         ACTGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGG                                     <  SRR4302533.3076868/94‑1 (MQ=60)
                                                           TGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAACTTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTCGGGAACGACCTGGTT                                   >  SRR4302533.182168/1‑94 (MQ=60)
                                                           TGGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTA                                   >  SRR4302533.471013/1‑94 (MQ=60)
                                                            GGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAT                                  <  SRR4302533.1534281/94‑1 (MQ=60)
                                                            GGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAT                                  <  SRR4302533.616235/94‑1 (MQ=60)
                                                            GGCGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTAT                                  <  SRR4302533.1058799/94‑1 (MQ=60)
                                                              CGAAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGG                                >  SRR4302533.1649558/1‑94 (MQ=60)
                                                                AAATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTG                              <  SRR4302533.1099411/94‑1 (MQ=60)
                                                                 AATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATCGTGG                             >  SRR4302533.3499983/1‑94 (MQ=60)
                                                                  ATACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGT                            >  SRR4302533.4436925/1‑94 (MQ=60)
                                                                   TACAGAACCAATAGTAATGAACAGCGGGAGAGCAAAGTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTG                           <  SRR4302533.5553874/94‑1 (MQ=60)
                                                                    ACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGG                          >  SRR4302533.1542720/1‑94 (MQ=60)
                                                                    ACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGG                          <  SRR4302533.6286692/94‑1 (MQ=60)
                                                                    ACAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGG                          >  SRR4302533.755833/1‑94 (MQ=60)
                                                                     CAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGA                         <  SRR4302533.4727788/94‑1 (MQ=60)
                                                                     CAGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGA                         <  SRR4302533.5367193/94‑1 (MQ=60)
                                                                      AGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGAC                        >  SRR4302533.5302817/1‑94 (MQ=60)
                                                                      AGAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGAC                        >  SRR4302533.3373480/1‑94 (MQ=60)
                                                                       GAACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACA                       <  SRR4302533.4138364/94‑1 (MQ=60)
                                                                        AACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAA                      >  SRR4302533.2101812/1‑94 (MQ=60)
                                                                        AACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAA                      >  SRR4302533.5034313/1‑94 (MQ=60)
                                                                         ACCAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAAT                     >  SRR4302533.3362759/1‑94 (MQ=60)
                                                                           CAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATAT                   <  SRR4302533.650338/94‑1 (MQ=60)
                                                                           CAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATAT                   <  SRR4302533.1563819/94‑1 (MQ=60)
                                                                           CAATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATAT                   <  SRR4302533.5719434/94‑1 (MQ=60)
                                                                            AATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATG                  >  SRR4302533.4445489/1‑94 (MQ=60)
                                                                            AATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATG                  <  SRR4302533.3796758/94‑1 (MQ=60)
                                                                            AATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATA                  <  SRR4302533.847151/94‑1 (MQ=60)
                                                                             ATAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAAGGACCTGGTATGGTGGTGGACAATATGC                 >  SRR4302533.4900203/1‑94 (MQ=60)
                                                                              TAGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCT                >  SRR4302533.1955985/1‑94 (MQ=60)
                                                                               AGTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTG               <  SRR4302533.1526310/94‑1 (MQ=60)
                                                                                GTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGA              <  SRR4302533.5574004/94‑1 (MQ=60)
                                                                                GTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGA              >  SRR4302533.3689726/1‑94 (MQ=60)
                                                                                GTAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGA              <  SRR4302533.5098457/94‑1 (MQ=60)
                                                                                 TAATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAA             <  SRR4302533.1436728/94‑1 (MQ=60)
                                                                                  AATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAAT            >  SRR4302533.5096809/1‑94 (MQ=60)
                                                                                  AATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAAT            <  SRR4302533.3997139/94‑1 (MQ=60)
                                                                                  AATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAAT            <  SRR4302533.2839375/94‑1 (MQ=60)
                                                                                   ATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATA           >  SRR4302533.894718/1‑94 (MQ=60)
                                                                                   ATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATA           >  SRR4302533.6043751/1‑94 (MQ=60)
                                                                                   ATGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATA           >  SRR4302533.147594/1‑94 (MQ=60)
                                                                                    TGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATAT          <  SRR4302533.992214/94‑1 (MQ=60)
                                                                                    TGAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATAT          <  SRR4302533.5768248/94‑1 (MQ=60)
                                                                                     GAACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATT         >  SRR4302533.1094960/1‑94 (MQ=60)
                                                                                      AACAGCGGGAGAGCAAATTTGCCCAGTCAACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTA        <  SRR4302533.5733658/94‑1 (MQ=60)
                                                                                       ACAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTAC       <  SRR4302533.5248694/94‑1 (MQ=60)
                                                                                        CAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACC      <  SRR4302533.5745580/94‑1 (MQ=60)
                                                                                        CAGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGGGGACAATATGCTGAATATTACC      >  SRR4302533.4959892/1‑94 (MQ=60)
                                                                                         AGCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCG     <  SRR4302533.6283500/94‑1 (MQ=60)
                                                                                          GCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGT    <  SRR4302533.4399238/94‑1 (MQ=60)
                                                                                          GCGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGT    <  SRR4302533.5401115/94‑1 (MQ=60)
                                                                                           CGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTG   <  SRR4302533.2464775/94‑1 (MQ=60)
                                                                                           CGGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTG   <  SRR4302533.5733655/94‑1 (MQ=60)
                                                                                            GGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTGC  <  SRR4302533.610727/94‑1 (MQ=60)
                                                                                            GGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTGC  >  SRR4302533.571010/1‑94 (MQ=60)
                                                                                            |                                                                                             
ACCGTTCTCCAGTGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATAGTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACCTGGTATGGTGGTGGACAATATGCTGAATATTACCGTGC  >  NC_000913/999479‑999664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑