Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,003,385 |
Δ1 bp |
coding (186/681 nt) |
ycbF → |
putative chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,003,384 | 0 | A | . | 88.8%
| 707.3
/ 75.4
| 206 | coding (185/681 nt) | ycbF | putative chaperone |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (119/64); minor base G (12/11); total (131/75) |
| Fisher's exact test for biased strand distribution p-value = 2.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.01e-02 |
Only 100 of 235 total aligned reads displayed.
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAA > NC_000913/1003292‑1003473
|
gaATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGGag > 2:4775400/1‑92 (MQ=255)
aTCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGGGAGc > 1:3481190/1‑93 (MQ=255)
gATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCCACCGCCCCAC‑GCGTTGGGCCGGGGGGG‑AGCGTca > 1:1265852/1‑92 (MQ=255)
gATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCg > 2:6532288/1‑93 (MQ=255)
atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGa < 1:1301201/93‑1 (MQ=255)
atatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGa > 2:9195902/1‑93 (MQ=255)
tatCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGAc > 1:5865793/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACa > 2:6591525/1‑93 (MQ=255)
atCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACa > 1:6064901/1‑93 (MQ=255)
atCTATTTAAGGGACTAGTACGAGTCAGGAAGCGTGGCTGATTAGCAGTAAATACACCGTCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACa < 2:5013940/93‑1 (MQ=255)
tCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑GGCGTCGACAg > 2:3749487/1‑93 (MQ=255)
cTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGt > 2:9648603/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGGGAGCGTCGACAGt > 1:9840881/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTg > 1:579434/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTg < 1:5237066/93‑1 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTg > 1:2650358/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTg > 2:2187289/1‑93 (MQ=255)
tATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTg > 1:4201741/1‑93 (MQ=255)
tttttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGc < 1:4828423/92‑1 (MQ=255)
ttttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGcc > 1:4340453/1‑93 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAg > 2:9626112/1‑93 (MQ=255)
ttACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAg > 1:3662093/1‑93 (MQ=255)
tcTGACCAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCa < 1:1065218/92‑1 (MQ=255)
aCTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCa > 2:3358436/1‑93 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCa < 1:4974177/93‑1 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCa < 2:3423119/93‑1 (MQ=255)
gACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCa > 1:2238474/1‑93 (MQ=255)
tAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTa > 1:5964082/1‑93 (MQ=255)
aaTACCAGTCAGGAATCCTGTCTTATAAACAGTAAAATCACCCGCCCAAC‑GGGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTAc < 2:8452388/93‑1 (MQ=255)
aTACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACt > 2:9663329/1‑93 (MQ=255)
tACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTg > 1:9575780/1‑93 (MQ=255)
aaCCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTg < 2:6417741/92‑1 (MQ=255)
ccAGTGAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGc < 2:7823055/93‑1 (MQ=255)
aGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGccc > 1:3083211/1‑92 (MQ=255)
gTCAGGAATCCTGGCTTATAAACAGTAAAATCAACCGCCCAAC‑GGGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGACGc < 1:6254923/93‑1 (MQ=255)
tCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCt > 1:7348410/1‑93 (MQ=255)
tCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCt > 1:1919354/1‑93 (MQ=255)
agaaaTCCGGGTTTATAAAAATAAAAACCACCCGCCCAAC‑GCTTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 2:9476113/90‑1 (MQ=255)
aGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTcc < 1:8470737/93‑1 (MQ=255)
ggAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCg > 1:6488188/1‑93 (MQ=255)
gAATCCTGGCTTATTGACACTAAAATCAACCGCCCAAC‑CCGATGGGCCGGGGGGG‑CGCCTCCGCCGAGCCAGCACCCTTACCGGGCGCCCCGc > 2:2111335/1‑93 (MQ=255)
aTCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGG‑‑AGCCTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 2:4488878/1‑93 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc < 2:6879093/93‑1 (MQ=255)
tCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAc > 2:2784858/1‑93 (MQ=255)
ccTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACt > 1:475187/1‑93 (MQ=255)
ccTGGCTTATTAACAGAAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACt < 1:8372651/93‑1 (MQ=255)
cTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACtt > 1:3291910/1‑93 (MQ=255)
ggCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAt > 2:9099418/1‑93 (MQ=255)
ggCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAt > 2:4777289/1‑93 (MQ=255)
ggCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAt > 1:4929602/1‑93 (MQ=255)
ttattaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtct > 1:9199603/1‑93 (MQ=255)
tattaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATtctc > 2:9610668/1‑93 (MQ=255)
attaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTcc > 1:8796054/1‑93 (MQ=255)
ttaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCt > 2:5245894/1‑93 (MQ=255)
ttaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCt > 2:3980093/1‑93 (MQ=255)
ttaACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCt > 2:6319752/1‑93 (MQ=255)
aaCAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGa > 1:9915344/1‑93 (MQ=255)
aaCAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGGGCCAGCACCATACCTGGCCGCTCCCCCCCTTATtctcttta > 2:6092860/1‑89 (MQ=255)
aGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGc > 1:2506038/1‑93 (MQ=255)
aaaaaTCAACCGCCCAAC‑GGGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGccc < 2:3080475/92‑1 (MQ=255)
aaaaTCACCCGCCCAAG‑GCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGccc < 1:5336383/93‑1 (MQ=255)
aaaaTCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCg < 1:5004741/93‑1 (MQ=255)
aaTCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGt > 2:8065891/1‑93 (MQ=255)
accAACCCCCCAGC‑G‑GTTGGGGCCGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa < 1:2337087/91‑1 (MQ=255)
aTCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa > 2:6474207/1‑93 (MQ=255)
aTCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa > 2:6869085/1‑93 (MQ=255)
aTCAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa > 2:8307329/1‑93 (MQ=255)
aTCAACCCCCCAACGGCGTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGt < 2:4337854/93‑1 (MQ=255)
acAACCGCCCACC‑GCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTa < 1:1467968/92‑1 (MQ=255)
cAACCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACg > 1:8123036/1‑93 (MQ=255)
aaCCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGa > 1:6546445/1‑93 (MQ=255)
aaCCGCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGCACGa > 1:3340188/1‑93 (MQ=255)
aCCGCCCACC‑GCGTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGAc < 2:1447215/93‑1 (MQ=255)
ccccccACC‑GCGTTGGCCCGGGGGGG‑‑GCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAg < 2:2866999/90‑1 (MQ=255)
ccGCCCACC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACa < 1:2658072/93‑1 (MQ=255)
cGCCTAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAg < 1:1668510/93‑1 (MQ=255)
gCCCAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAgg > 2:3579502/1‑93 (MQ=255)
cccAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGc > 2:6101856/1‑93 (MQ=255)
cacAAC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGATCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGc < 2:5277240/91‑1 (MQ=255)
ccACC‑GGGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCa < 2:8422991/93‑1 (MQ=255)
aC‑GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGt > 1:9004479/1‑93 (MQ=255)
gcgTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg > 2:4598438/1‑93 (MQ=255)
gcgTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTg < 1:3588448/93‑1 (MQ=255)
gTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcg > 2:1751079/1‑93 (MQ=255)
gTTGGGCCCGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgc < 2:2475726/93‑1 (MQ=255)
ttGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTgcgc < 2:10014209/93‑1 (MQ=255)
tGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCt < 2:4988894/93‑1 (MQ=255)
ggggCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCt < 2:3021462/92‑1 (MQ=255)
gggCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCtt > 1:7023998/1‑93 (MQ=255)
ggCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTg < 1:4887026/93‑1 (MQ=255)
gCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGc < 2:1329072/93‑1 (MQ=255)
gCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGc > 2:3163394/1‑93 (MQ=255)
gcggggggGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCt < 1:2834143/91‑1 (MQ=255)
ggggggGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTga < 2:492155/93‑1 (MQ=255)
ggggggGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTga > 2:7280146/1‑93 (MQ=255)
ggggggGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTga < 2:2039221/93‑1 (MQ=255)
cggggggggCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTga < 1:9710324/92‑1 (MQ=255)
ggggggAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTgag > 2:710450/1‑93 (MQ=255)
ggggAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGaa > 1:945328/1‑93 (MQ=255)
ggggAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGaa < 2:9773666/93‑1 (MQ=255)
|
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAAC‑GCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAA > NC_000913/1003292‑1003473
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAA > NC_000913/1003292‑1003478
|
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAG < SRR4302540.6254978/94‑1 (MQ=60)
AATCGATATCTATTTTGCTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCG > SRR4302540.9909221/1‑94 (MQ=60)
AATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGAGC > SRR4302540.3519091/1‑94 (MQ=60)
CGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCG > SRR4302540.3830036/1‑94 (MQ=60)
CGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCG > SRR4302540.1278866/1‑94 (MQ=60)
taattTATTTTACTGAATAATACCAGTCAGGAATCCTGGCTTATCAACAGTAAAATCAACCGCCCACCGCGTTGGGCCGGGGGGG‑AGCGTCGAC < SRR4302540.1314688/89‑1 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGTTTATAAACAGTAAAATCACCCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGAC < SRR4302540.2504399/94‑1 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGAC > SRR4302540.5930645/1‑94 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGAC > SRR4302540.5930646/1‑94 (MQ=60)
ATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGAC < SRR4302540.1314689/94‑1 (MQ=60)
TATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACA > SRR4302540.6132326/1‑94 (MQ=60)
ATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAG > SRR4302540.7135112/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGAGCGTCGACAGT > SRR4302540.9955931/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTG > SRR4302540.2679108/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTG > SRR4302540.585705/1‑94 (MQ=60)
CTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTG > SRR4302540.4247461/1‑94 (MQ=60)
TATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGC < SRR4302540.5294196/94‑1 (MQ=60)
TTTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCC < SRR4302540.4880128/94‑1 (MQ=60)
ATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCC > SRR4302540.4387704/1‑94 (MQ=60)
ATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCA > SRR4302540.5350876/1‑94 (MQ=60)
TTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAG > SRR4302540.3702178/1‑94 (MQ=60)
TTACTGACTAATCCCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGGTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGC < SRR4302540.1218218/94‑1 (MQ=60)
TACTGACTAATACCAGTCATAAACCCTGGCTTATTAAAAGTAAAATCAACCGCCCAGCGGGTTGGGCCGGGGGGG‑‑GCGTCGACAGTGCCAGCAC < SRR4302540.6980998/94‑1 (MQ=60)
TACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑CGCGTCGACAGTGCCAGCC > SRR4302540.8489494/1‑94 (MQ=60)
TCTGACCAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCAC < SRR4302540.1076070/94‑1 (MQ=60)
CTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACC > SRR4302540.6834400/1‑94 (MQ=60)
CTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACC > SRR4302540.9397087/1‑94 (MQ=60)
TGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCA > SRR4302540.2262545/1‑94 (MQ=60)
TGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCA > SRR4302540.3689988/1‑94 (MQ=60)
TGACTAAGACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCA > SRR4302540.9958336/1‑94 (MQ=60)
GACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCAT < SRR4302540.5028006/94‑1 (MQ=60)
CTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTA > SRR4302540.6030070/1‑94 (MQ=60)
aacaccaagaaaaaatccttgttttaaaaaaaaaaaaaccccccccccaggggttgGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTAC < SRR4302540.328486/38‑1 (MQ=60)
TAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCACCGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTAC < SRR4302540.6574509/94‑1 (MQ=60)
AATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTAC > SRR4302540.9650246/1‑94 (MQ=60)
AATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACT > SRR4302540.8351572/1‑94 (MQ=60)
AATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACT < SRR4302540.6889548/94‑1 (MQ=60)
AATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACT > SRR4302540.3369157/1‑94 (MQ=60)
aacaccagtaagaattcctgctttattaacagaaaaaccaccccccaaccgcgTGGGCCCGGGGGGGAGCGTCGACAGTGCCAGCACCATTACT < SRR4302540.5755114/41‑1 (MQ=59)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTG > SRR4302540.9688878/1‑94 (MQ=60)
ATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTG < SRR4302540.3478793/94‑1 (MQ=60)
ctggccataacgctttgaaaataagcgaaaaaccccccccgcgcgcgcgTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCC < SRR4302540.7662738/45‑1 (MQ=60)
CAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCG > SRR4302540.348881/1‑94 (MQ=60)
CAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCC > SRR4302540.3117043/1‑94 (MQ=60)
AGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGC > SRR4302540.8894252/1‑94 (MQ=60)
GTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302540.7430394/1‑94 (MQ=60)
GTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302540.1940296/1‑94 (MQ=60)
GTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCT > SRR4302540.2017012/1‑94 (MQ=60)
GTCAGGAATCCTGGCTTATAAACAGTAAAATCACCCGCCCAACGCGTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGACGCT < SRR4302540.6324518/94‑1 (MQ=60)
GTCAGGAATCCTGGCTTATAAACAGTAAAATCAACCGCCCAACGGGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGACGCT < SRR4302540.6324517/94‑1 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG > SRR4302540.9207957/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG < SRR4302540.8569110/94‑1 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG > SRR4302540.6560341/1‑94 (MQ=60)
AGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCG > SRR4302540.9880211/1‑94 (MQ=60)
GAACCCTGGCTTATTAACAGAAAAACCAACCGCCCAACGCGTTGGGCCGGGGGAG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCC < SRR4302540.3909094/94‑1 (MQ=60)
ATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAC > SRR4302540.123628/1‑94 (MQ=60)
ATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCAC > SRR4302540.2334898/1‑94 (MQ=60)
TCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACT > SRR4302540.480276/1‑94 (MQ=60)
TCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACT > SRR4302540.480277/1‑94 (MQ=60)
ctgggtttatcaacagaaaaatgaccccccacacggGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302540.4212690/58‑1 (MQ=60)
ccgtttttaaaaccaaaaacaccaccgcccagaggtGTTGGCCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302540.5826639/58‑1 (MQ=60)
CCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT > SRR4302540.3327928/1‑94 (MQ=60)
CCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302540.3575058/94‑1 (MQ=60)
CCTGGCTTATTAACAGAAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302540.8469820/94‑1 (MQ=60)
ctggctttaaaaaaaaaaaaccaccccccaccgcgtggtggcccGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTT < SRR4302540.5826638/50‑1 (MQ=60)
ttgttaataaaaaaaaaaaccacccccccccgcggggGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAT < SRR4302540.237502/57‑1 (MQ=60)
tgttttaaaaaaaaaaaaaccacccccccaacggtTTGGGCCCGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTA < SRR4302540.9016174/59‑1 (MQ=60)
TGTCTTATAAACAGTAAAATCAACCGCCAAACGGGTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAT < SRR4302540.2683821/94‑1 (MQ=60)
TGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGTCGATCCGCCACTTAT > SRR4302540.4982734/1‑94 (MQ=60)
TGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTAT > SRR4302540.4982735/1‑94 (MQ=60)
tttataaacaaaaaacccccccccccccgcttgtgcGCCGGGGGGG‑‑GCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTC < SRR4302540.2445961/58‑1 (MQ=60)
CTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCT > SRR4302540.9309967/1‑94 (MQ=60)
TTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTC > SRR4302540.466773/1‑94 (MQ=60)
aataaaaaaaaaaccccccccccagcggggggggcCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTC < SRR4302540.9306061/59‑1 (MQ=60)
TATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCC < SRR4302540.4994135/94‑1 (MQ=60)
TATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCC > SRR4302540.8897770/1‑94 (MQ=60)
TTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTG > SRR4302540.2822431/1‑94 (MQ=60)
TAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGA > SRR4302540.10031149/1‑94 (MQ=60)
acaaaaaaactcacccccccaccgcttgGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAA < SRR4302540.4159411/66‑1 (MQ=60)
ACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAG < SRR4302540.3065295/94‑1 (MQ=60)
cagtaaacccccccccccacCGCGTTGGCCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGC < SRR4302540.7806124/74‑1 (MQ=60)
aataAAAATCAACCCCCAAACCCGTTGGCCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCTCCACTTATTCTCCTGAAGC < SRR4302540.7806125/90‑1 (MQ=60)
CAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGC > SRR4302540.1683347/1‑94 (MQ=60)
CAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGC > SRR4302540.2533095/1‑94 (MQ=60)
AGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCC > SRR4302540.5086905/1‑94 (MQ=60)
aaaaaaccccccccccagcggGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCC < SRR4302540.2621170/73‑1 (MQ=60)
TAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG < SRR4302540.4955592/94‑1 (MQ=60)
aacacaacccccccgcggggtgGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGG < SRR4302540.5788514/72‑1 (MQ=60)
AAAATCACCCGCCCAAGGCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCG < SRR4302540.5394875/94‑1 (MQ=60)
AAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGG > SRR4302540.5948208/1‑94 (MQ=60)
AAAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGG < SRR4302540.5058946/94‑1 (MQ=60)
AAATCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGA > SRR4302540.1385518/1‑94 (MQ=60)
acccccccccaccggggggGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302540.2039628/75‑1 (MQ=60)
accaaccccccagcggttgGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302540.2362272/75‑1 (MQ=60)
ccaccgcccccgcgcgtgggccgGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302540.7593184/71‑1 (MQ=60)
TCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACG > SRR4302540.5861345/1‑94 (MQ=60)
TCAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACG > SRR4302540.8217317/1‑94 (MQ=60)
ACAACCGCCCACCGCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTAC < SRR4302540.1483990/94‑1 (MQ=60)
CAACCGCCCAACGCGTTGGGCCGGGGGGG‑CGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302540.262787/1‑94 (MQ=60)
CAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302540.262788/1‑94 (MQ=60)
CAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302540.4891579/1‑94 (MQ=60)
CAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302540.6619072/1‑94 (MQ=60)
CAACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGCACGA > SRR4302540.3376849/1‑94 (MQ=60)
AACCGCCCAACGCGTTGGGCCGGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGA > SRR4302540.4767647/1‑94 (MQ=60)
ACCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACA < SRR4302540.5163792/94‑1 (MQ=60)
CCGCCCACCGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAG < SRR4302540.2686917/94‑1 (MQ=60)
CCGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAG > SRR4302540.3289756/1‑94 (MQ=60)
CGCCTAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGG < SRR4302540.1686667/94‑1 (MQ=60)
CGCCCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGG > SRR4302540.8455466/1‑94 (MQ=60)
CGCCCAACGCGTGGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGG < SRR4302540.612596/94‑1 (MQ=60)
CCCCAACGCTTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGC < SRR4302540.2502491/94‑1 (MQ=60)
CCAACGCGTTGGTCCGGGGGGG‑AGCGTCGACAGTGTCAGCACCATTACTGGCAGCTCCGCCACTTATTCTCCTGAAGCCAGGTACGACAGGCAC > SRR4302540.6578906/1‑94 (MQ=60)
CCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC < SRR4302540.6226755/94‑1 (MQ=60)
CCAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCAC > SRR4302540.9061653/1‑94 (MQ=60)
CAACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACG < SRR4302540.950560/94‑1 (MQ=60)
AACGCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGT > SRR4302540.9112508/1‑94 (MQ=60)
GCGTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGC < SRR4302540.3627645/94‑1 (MQ=60)
GTTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGC > SRR4302540.1480741/1‑94 (MQ=60)
TTGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCT < SRR4302540.1787176/94‑1 (MQ=60)
TGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTT > SRR4302540.7102019/1‑94 (MQ=60)
TGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTT < SRR4302540.4355214/94‑1 (MQ=60)
TGGGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTT < SRR4302540.2869395/94‑1 (MQ=60)
GGCCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGC < SRR4302540.4939539/94‑1 (MQ=60)
CCGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTG < SRR4302540.5056726/94‑1 (MQ=60)
gcGGGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTG < SRR4302540.2864796/92‑1 (MQ=60)
CGGGGGGG‑AGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGA < SRR4302540.8643985/94‑1 (MQ=60)
CGGGGGGG‑‑GCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAG < SRR4302540.9824446/94‑1 (MQ=60)
GGGGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGA < SRR4302540.2188634/94‑1 (MQ=60)
GGGGG‑‑GCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAC < SRR4302540.2097503/94‑1 (MQ=60)
tggggAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAA > SRR4302540.955188/6‑94 (MQ=60)
GGGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAAG > SRR4302540.2001525/1‑94 (MQ=60)
GGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACG > SRR4302540.3388081/1‑94 (MQ=60)
GGGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACG < SRR4302540.10123084/94‑1 (MQ=60)
GGAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGG > SRR4302540.5535115/1‑94 (MQ=60)
GAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGA < SRR4302540.1749409/94‑1 (MQ=60)
GAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGA > SRR4302540.4821835/1‑94 (MQ=60)
NGNNTNGNCNNTNCCNGCACNNTNANNGGCCGCTNCGCCACTTATTCTCCTGAAGCCNGGTACNACAGGNACGTTGCGCTTGCTGAGAACGGAA < SRR4302540.9456080/94‑1 (MQ=60)
|
AGAATCGATATCTATTTTACTGACTAATACCAGTCAGGAATCCTGGCTTATTAACAGTAAAATCAACCGCCCAACGCGTTGGGCCGGGGGGGAAGCGTCGACAGTGCCAGCACCATTACTGGCCGCTCCGCCACTTATTCTCCTGAAGCCCGGTACGACAGGCACGTTGCGCTTGCTGAGAACGGAA > NC_000913/1003292‑1003478
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
