Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,017,437 T→C D29G (GAC→GGC)  b0955 ← putative ATP‑dependent protease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,017,4370TC100.0% 690.1 / NA 219D29G (GAC→GGC) b0955putative ATP‑dependent protease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (114/105);  total (114/105)

Only 100 of 230 total aligned reads displayed.

TAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTT  >  NC_000913/1017348‑1017526
                                                                                         |                                                                                         
tAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaa                                                                                        <  2:4203038/93‑1 (MQ=255)
 aaaaGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaat                                                                                       >  1:431929/1‑93 (MQ=255)
  aaaGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaatc                                                                                      <  1:5919894/93‑1 (MQ=255)
     gaggagGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCaaa                                                                                   <  1:528994/93‑1 (MQ=255)
      aggaggATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAt                                                                                  <  2:3994824/93‑1 (MQ=255)
      aggaggATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAt                                                                                  >  2:1495899/1‑93 (MQ=255)
       ggaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtg                                                                                 >  2:423448/1‑93 (MQ=255)
        gaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtgt                                                                                >  2:1983351/1‑93 (MQ=255)
        gaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtgt                                                                                >  2:4171346/1‑93 (MQ=255)
           gaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGc                                                                             >  1:4424125/1‑93 (MQ=255)
           gaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGc                                                                             <  2:2614127/93‑1 (MQ=255)
             tGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTg                                                                           <  2:534902/93‑1 (MQ=255)
               cTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAg                                                                         <  1:5370581/93‑1 (MQ=255)
                tCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGc                                                                        >  2:3099636/1‑93 (MQ=255)
                 cgcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCa                                                                       >  1:267718/1‑93 (MQ=255)
                  gcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaa                                                                      >  2:3282106/1‑93 (MQ=255)
                  gcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaa                                                                      <  2:4332909/93‑1 (MQ=255)
                  gcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaa                                                                      >  1:3968441/1‑93 (MQ=255)
                   cgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaaa                                                                     <  1:3773189/93‑1 (MQ=255)
                     tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAata                                                                   <  2:4880753/93‑1 (MQ=255)
                     tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAata                                                                   >  2:720209/1‑93 (MQ=255)
                       tGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATAtt                                                                 <  2:2797420/93‑1 (MQ=255)
                        gcagcaACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATAttt                                                                <  1:422047/93‑1 (MQ=255)
                           gcaCCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCt                                                             <  2:3188316/93‑1 (MQ=255)
                           gcaACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCt                                                             >  1:476608/1‑93 (MQ=255)
                            caACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTg                                                            <  1:1579331/93‑1 (MQ=255)
                             aaCTGCTCCAGCGCAAATTGCAGCCGCTGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGa                                                           <  1:986384/93‑1 (MQ=255)
                             aaCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGa                                                           <  1:4643190/93‑1 (MQ=255)
                             aaCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGa                                                           <  1:5574586/93‑1 (MQ=255)
                              aCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAt                                                          >  1:4397288/1‑93 (MQ=255)
                              aCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAt                                                          >  2:2553155/1‑93 (MQ=255)
                               cTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATa                                                         <  1:1617244/93‑1 (MQ=255)
                               cTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATa                                                         >  2:3430116/1‑93 (MQ=255)
                                tGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAg                                                        >  1:4040510/1‑93 (MQ=255)
                                 gCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGc                                                       <  2:2342750/93‑1 (MQ=255)
                                   tCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTa                                                     >  2:4968501/1‑93 (MQ=255)
                                    ccAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTAt                                                    >  2:2223620/1‑93 (MQ=255)
                                    ccAGCGCAAATTGCAGCCGAGGTTAAGTATCACTGAGTCCAGGATCATTTACGCCAATCAAATGTGGCTAAGCAAATATTTCCTGATAGCTAt                                                    <  1:6304433/93‑1 (MQ=255)
                                     cAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATc                                                   <  1:2939649/93‑1 (MQ=255)
                                      aGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCg                                                  >  1:4941448/1‑93 (MQ=255)
                                       gcgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCgg                                                 >  2:3747790/1‑93 (MQ=255)
                                       gcgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCgg                                                 >  2:1631409/1‑93 (MQ=255)
                                        cgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGt                                                <  1:2322592/93‑1 (MQ=255)
                                         gcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATTGCTATCGGtc                                               >  2:5499019/1‑92 (MQ=255)
                                         gcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTa                                               <  1:3983591/93‑1 (MQ=255)
                                           aaaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATc                                             >  1:4561347/1‑93 (MQ=255)
                                           aaaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCCGATAGCTATCGGTATc                                             >  1:1989945/1‑93 (MQ=255)
                                            aaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCa                                            >  1:5079983/1‑93 (MQ=255)
                                            aaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCa                                            >  2:3619439/1‑93 (MQ=255)
                                               tGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGa                                         <  2:3237632/93‑1 (MQ=255)
                                               tGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGa                                         <  2:2487766/93‑1 (MQ=255)
                                                gCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGaa                                        <  1:3587847/93‑1 (MQ=255)
                                                gCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGaa                                        <  1:6018281/93‑1 (MQ=255)
                                                 cAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAc                                       >  2:3920884/1‑93 (MQ=255)
                                                  ggCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAcc                                      <  2:4773879/92‑1 (MQ=255)
                                                  aGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAcc                                      >  2:5538556/1‑93 (MQ=255)
                                                  aGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAcc                                      <  2:5117966/93‑1 (MQ=255)
                                                   gCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCa                                     <  1:78886/93‑1 (MQ=255)
                                                   gCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCa                                     >  1:1903391/1‑93 (MQ=255)
                                                   gCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCa                                     >  1:5198510/1‑93 (MQ=255)
                                                   gCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCa                                     >  1:146687/1‑93 (MQ=255)
                                                    ccGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAg                                    <  1:115037/93‑1 (MQ=255)
                                                     cgcgGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAgg                                   >  2:340149/1‑93 (MQ=255)
                                                      gcgGTTGAGTATCACTGAATAAAGGATCGTTTTCGCTAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGt                                  <  1:5826616/93‑1 (MQ=255)
                                                      gcgGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGt                                  >  2:4714138/1‑93 (MQ=255)
                                                       cgGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTc                                 <  2:2435226/93‑1 (MQ=255)
                                                          ttGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACg                              <  2:761046/93‑1 (MQ=255)
                                                            gAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGcc                            >  2:2929636/1‑93 (MQ=255)
                                                            gAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGcc                            >  1:873959/1‑93 (MQ=255)
                                                            gAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGcc                            >  1:3523625/1‑93 (MQ=255)
                                                             aGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCa                           <  2:5929265/93‑1 (MQ=255)
                                                             aGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCa                           <  1:241683/93‑1 (MQ=255)
                                                              gTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCAt                          >  1:6041784/1‑93 (MQ=255)
                                                                 tCACTGAATAAAGTATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCa                       >  2:6121461/1‑93 (MQ=255)
                                                                    cTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGt                    <  1:1996080/93‑1 (MQ=255)
                                                                      gAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTGTCGGTATCAGGAACCAGGTCACGCCATGCAAGttt                  <  1:4693000/93‑1 (MQ=255)
                                                                      gAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGttt                  <  1:4162446/93‑1 (MQ=255)
                                                                      gAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGttt                  <  1:602272/93‑1 (MQ=255)
                                                                      gAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGttt                  <  2:4367875/93‑1 (MQ=255)
                                                                      gAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGttt                  >  1:2297923/1‑93 (MQ=255)
                                                                       aaTAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTGCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTc                 <  1:1337292/93‑1 (MQ=255)
                                                                         tAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGt               >  2:1288782/1‑93 (MQ=255)
                                                                          aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTa              >  1:2439573/1‑93 (MQ=255)
                                                                          aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTa              >  2:4296868/1‑93 (MQ=255)
                                                                          aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTa              <  1:6130913/93‑1 (MQ=255)
                                                                           aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             <  2:215636/93‑1 (MQ=255)
                                                                           aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             >  2:4484237/1‑93 (MQ=255)
                                                                            aGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            >  2:5761091/1‑93 (MQ=255)
                                                                            aGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            >  2:106223/1‑93 (MQ=255)
                                                                            aGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            >  2:2724107/1‑93 (MQ=255)
                                                                             ggATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATg           >  1:6174720/1‑93 (MQ=255)
                                                                                tCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTc        <  1:3635444/93‑1 (MQ=255)
                                                                                 cGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCa       >  2:78428/1‑93 (MQ=255)
                                                                                  gTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCaa      >  2:5919010/1‑93 (MQ=255)
                                                                                  gTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCaa      <  1:3151390/93‑1 (MQ=255)
                                                                                   ttttCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCaaa     >  2:4569197/1‑93 (MQ=255)
                                                                                   ttttCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCaaa     >  2:2033406/1‑93 (MQ=255)
                                                                                      tCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGtt  <  2:4909234/93‑1 (MQ=255)
                                                                                      tCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGtt  <  1:1037466/93‑1 (MQ=255)
                                                                                      tCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGtt  <  1:1384301/93‑1 (MQ=255)
                                                                                         |                                                                                         
TAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTT  >  NC_000913/1017348‑1017526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGATG  >  NC_000913/1017347‑1017530
                                                                                          |                                                                                             
ATAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAA                                                                                            >  SRR4302533.3200925/1‑94 (MQ=60)
 TAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAAT                                                                                           >  SRR4302533.434503/1‑94 (MQ=60)
 TAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAAT                                                                                           <  SRR4302533.3706282/94‑1 (MQ=60)
   AAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCA                                                                                         <  SRR4302533.6019114/94‑1 (MQ=60)
   AAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCA                                                                                         <  SRR4302533.5955677/94‑1 (MQ=60)
   AAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCA                                                                                         <  SRR4302533.1432164/94‑1 (MQ=60)
     AGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAA                                                                                       <  SRR4302533.4127771/94‑1 (MQ=60)
     AGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAA                                                                                       <  SRR4302533.612480/94‑1 (MQ=60)
      GAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAT                                                                                      <  SRR4302533.532139/94‑1 (MQ=60)
      GAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAT                                                                                      <  SRR4302533.5127697/94‑1 (MQ=60)
       AGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATG                                                                                     >  SRR4302533.5946953/1‑94 (MQ=60)
         GAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCTCTGAATAAAGGATCGTTTTCGCCAATCAAATGTG                                                                                   <  SRR4302533.6179706/94‑1 (MQ=60)
         GAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTG                                                                                   <  SRR4302533.257112/94‑1 (MQ=60)
          AGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGG                                                                                  >  SRR4302533.4732772/1‑94 (MQ=60)
          AGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGG                                                                                  <  SRR4302533.3582355/94‑1 (MQ=60)
           GGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGC                                                                                 >  SRR4302533.4450868/1‑94 (MQ=60)
             ATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTG                                                                               <  SRR4302533.2446448/94‑1 (MQ=60)
              TGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATATGGCTGA                                                                              >  SRR4302533.6320189/1‑94 (MQ=60)
               GCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAG                                                                             <  SRR4302533.968942/94‑1 (MQ=60)
                CTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGC                                                                            <  SRR4302533.5402850/94‑1 (MQ=60)
                CTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGC                                                                            >  SRR4302533.3799753/1‑94 (MQ=60)
                 TCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCA                                                                           >  SRR4302533.269345/1‑94 (MQ=60)
                  CGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAA                                                                          >  SRR4302533.3992613/1‑94 (MQ=60)
                    CGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAAT                                                                        <  SRR4302533.3796319/94‑1 (MQ=60)
                     CTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATA                                                                       <  SRR4302533.1392307/94‑1 (MQ=60)
                        TGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTT                                                                    >  SRR4302533.1602193/1‑94 (MQ=60)
                        TGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTT                                                                    >  SRR4302533.437436/1‑94 (MQ=60)
                         GCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTC                                                                   <  SRR4302533.424572/94‑1 (MQ=60)
                          CAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCCATCAAATGTGGCTGAGCAAATATTTCC                                                                  >  SRR4302533.1936731/1‑94 (MQ=60)
                           AGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCT                                                                 >  SRR4302533.378171/1‑94 (MQ=60)
                           AGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCT                                                                 >  SRR4302533.1587990/1‑94 (MQ=60)
                           AGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCT                                                                 >  SRR4302533.479452/1‑94 (MQ=60)
                            GCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTG                                                                <  SRR4302533.1689152/94‑1 (MQ=60)
                             CAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGA                                                               <  SRR4302533.1588844/94‑1 (MQ=60)
                              AACTGCTCCAGCGCAAATTGCAGCCGCTGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAT                                                              <  SRR4302533.992158/94‑1 (MQ=60)
                              AACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAT                                                              <  SRR4302533.4671321/94‑1 (MQ=60)
                              AACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAT                                                              <  SRR4302533.5608274/94‑1 (MQ=60)
                              AACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGAT                                                              >  SRR4302533.4423837/1‑94 (MQ=60)
                                CTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAG                                                            >  SRR4302533.4065102/1‑94 (MQ=60)
                                CTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAG                                                            <  SRR4302533.1627044/94‑1 (MQ=60)
                                 TGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGC                                                           <  SRR4302533.5492835/94‑1 (MQ=60)
                                   CTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTA                                                         <  SRR4302533.219308/94‑1 (MQ=60)
                                    TCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTAT                                                        >  SRR4302533.4284538/1‑94 (MQ=60)
                                    TCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTAT                                                        >  SRR4302533.39961/1‑94 (MQ=60)
                                     CCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATC                                                       <  SRR4302533.3131963/94‑1 (MQ=60)
                                     CCAGCGCAAATTGCAGCCGAGGTTAAGTATCACTGAGTCCAGGATCATTTACGCCAATCAAATGTGGCTAAGCAAATATTTCCTGATAGCTATC                                                       <  SRR4302533.6342136/94‑1 (MQ=53)
                                      CAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCG                                                      <  SRR4302533.2957608/94‑1 (MQ=60)
                                      CAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCG                                                      >  SRR4302533.4971361/1‑94 (MQ=60)
                                         CGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTA                                                   <  SRR4302533.2336966/94‑1 (MQ=60)
                                          GCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTAT                                                  <  SRR4302533.4007846/94‑1 (MQ=60)
                                           CAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATC                                                 <  SRR4302533.2272578/94‑1 (MQ=60)
                                           CAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATC                                                 >  SRR4302533.4589010/1‑94 (MQ=60)
                                           CAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCCGATAGCTATCGGTATC                                                 >  SRR4302533.2002129/1‑94 (MQ=60)
                                            AAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCA                                                >  SRR4302533.4688886/1‑94 (MQ=60)
                                            AAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCA                                                >  SRR4302533.5110688/1‑94 (MQ=60)
                                                TGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAA                                            <  SRR4302533.5034136/94‑1 (MQ=60)
                                                 GCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAC                                           <  SRR4302533.3609941/94‑1 (MQ=60)
                                                 GCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAC                                           <  SRR4302533.6054749/94‑1 (MQ=60)
                                                   AGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCA                                         >  SRR4302533.1915005/1‑94 (MQ=60)
                                                   AGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCA                                         >  SRR4302533.147626/1‑94 (MQ=60)
                                                   AGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCA                                         >  SRR4302533.5229857/1‑94 (MQ=60)
                                                    GCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGTAAATATTTCCTGATAGCTATCGGTATCAGGAACCAG                                        <  SRR4302533.4980267/94‑1 (MQ=60)
                                                    GCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAG                                        <  SRR4302533.458984/94‑1 (MQ=60)
                                                    GCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAG                                        <  SRR4302533.79391/94‑1 (MQ=60)
                                                     CCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGG                                       <  SRR4302533.115770/94‑1 (MQ=60)
                                                     CCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGG                                       >  SRR4302533.5366114/1‑94 (MQ=60)
                                                      CGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGT                                      >  SRR4302533.5365867/1‑94 (MQ=60)
                                                       GCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCTAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTC                                     <  SRR4302533.5861824/94‑1 (MQ=60)
                                                       GCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTC                                     <  SRR4302533.570335/94‑1 (MQ=60)
                                                        CGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCA                                    >  SRR4302533.2627971/1‑94 (MQ=60)
                                                         GGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAC                                   <  SRR4302533.4349237/94‑1 (MQ=60)
                                                         GGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAC                                   >  SRR4302533.2004535/1‑94 (MQ=60)
                                                         GGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAC                                   <  SRR4302533.405716/94‑1 (MQ=60)
                                                         GGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAC                                   >  SRR4302533.4201416/1‑94 (MQ=60)
                                                          GTTGAGTATCACTGAATAAAGGATCGTTTTCGCTAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACG                                  <  SRR4302533.59413/94‑1 (MQ=60)
                                                            TGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCC                                >  SRR4302533.879091/1‑94 (MQ=60)
                                                            TGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCC                                >  SRR4302533.3545343/1‑94 (MQ=60)
                                                            TGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCC                                >  SRR4302533.6104649/1‑94 (MQ=60)
                                                              AGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCAT                              <  SRR4302533.243181/94‑1 (MQ=60)
                                                              AGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCAT                              >  SRR4302533.6078394/1‑94 (MQ=60)
                                                                TATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGC                            >  SRR4302533.6076275/1‑94 (MQ=60)
                                                                TATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGC                            <  SRR4302533.6057627/94‑1 (MQ=60)
                                                                 ATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCA                           >  SRR4302533.1825789/1‑94 (MQ=60)
                                                                  TCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAA                          >  SRR4302533.4096432/1‑94 (MQ=60)
                                                                   CACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAG                         <  SRR4302533.719333/94‑1 (MQ=60)
                                                                     CTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTT                       <  SRR4302533.811358/94‑1 (MQ=60)
                                                                     CTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTT                       <  SRR4302533.2008341/94‑1 (MQ=60)
                                                                      TGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTT                      >  SRR4302533.2312176/1‑94 (MQ=60)
                                                                       GAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTGTCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTC                     <  SRR4302533.4721442/94‑1 (MQ=60)
                                                                       GAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTC                     <  SRR4302533.4187668/94‑1 (MQ=60)
                                                                       GAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTC                     <  SRR4302533.605812/94‑1 (MQ=60)
                                                                        AATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTGCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCG                    <  SRR4302533.1345317/94‑1 (MQ=60)
                                                                          TAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTA                  >  SRR4302533.2454637/1‑94 (MQ=60)
                                                                          TAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTA                  <  SRR4302533.1443918/94‑1 (MQ=60)
                                                                          TAAAGGATCGTTTTCGCCAACCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTA                  <  SRR4302533.997110/94‑1 (MQ=60)
                                                                           AAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAA                 <  SRR4302533.5308319/94‑1 (MQ=60)
                                                                           AAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAA                 <  SRR4302533.6167855/94‑1 (MQ=60)
                                                                             AGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATG               >  SRR4302533.690421/1‑94 (MQ=60)
                                                                             AGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATG               >  SRR4302533.6211825/1‑94 (MQ=60)
                                                                               GATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGT             <  SRR4302533.3526030/94‑1 (MQ=60)
                                                                                ATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTC            >  SRR4302533.4548248/1‑94 (MQ=60)
                                                                                 TCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCA           <  SRR4302533.3657799/94‑1 (MQ=60)
                                                                                 TCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCA           <  SRR4302533.3657797/94‑1 (MQ=60)
                                                                                 TCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCA           >  SRR4302533.2350257/1‑94 (MQ=60)
                                                                                  CGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAA          >  SRR4302533.4629482/1‑94 (MQ=60)
                                                                                  CGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAA          <  SRR4302533.2715741/94‑1 (MQ=60)
                                                                                   GTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAA         <  SRR4302533.4450273/94‑1 (MQ=60)
                                                                                   GTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAA         <  SRR4302533.3170765/94‑1 (MQ=60)
                                                                                   GTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAA         >  SRR4302533.1161476/1‑94 (MQ=60)
                                                                                    TTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAG        <  SRR4302533.1147264/94‑1 (MQ=60)
                                                                                      TTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTT      <  SRR4302533.2331849/94‑1 (MQ=60)
                                                                                       TCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTG     <  SRR4302533.1392630/94‑1 (MQ=60)
                                                                                       TCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTG     <  SRR4302533.1043565/94‑1 (MQ=60)
                                                                                       TCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTG     <  SRR4302533.4867489/94‑1 (MQ=60)
                                                                                         GCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGAT   >  SRR4302533.2073254/1‑94 (MQ=60)
                                                                                         GCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGAT   <  SRR4302533.1288554/94‑1 (MQ=60)
                                                                                         GCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGAT   <  SRR4302533.5422872/94‑1 (MQ=60)
                                                                                         GCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGAT   <  SRR4302533.4473000/94‑1 (MQ=60)
                                                                                          CCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGATG  >  SRR4302533.3035677/1‑94 (MQ=60)
                                                                                          CCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGATG  >  SRR4302533.3292299/1‑94 (MQ=60)
                                                                                          |                                                                                             
ATAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTTGATG  >  NC_000913/1017347‑1017530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑