Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,060,946 A→G E823G (GAG→GGG)  torA → trimethylamine N‑oxide reductase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,060,9460AG100.0% 607.6 / NA 188E823G (GAG→GGG) torAtrimethylamine N‑oxide reductase subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (88/100);  total (88/100)

Only 100 of 193 total aligned reads displayed.

TGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGA  >  NC_000913/1060856‑1061034
                                                                                          |                                                                                        
tGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGc                                                                                        <  2:3630791/93‑1 (MQ=255)
 gACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCa                                                                                       <  1:3090347/93‑1 (MQ=255)
  aCCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAg                                                                                      >  2:5174032/1‑93 (MQ=255)
  aCCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACAAGTGCGCACACTACGCTGGGGGAAATTGAGAAGTACAGCGGAACTGTGGGGCAg                                                                                      <  2:1950841/93‑1 (MQ=255)
    cATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGGGGAAATTGAGAAGTACAACGGGACAGTGGGGCAggg                                                                                    >  2:3308670/1‑92 (MQ=255)
     aTCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTg                                                                                   >  2:4301670/1‑93 (MQ=255)
     aTCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTg                                                                                   <  1:5241926/93‑1 (MQ=255)
      tCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGa                                                                                  <  2:4373897/93‑1 (MQ=255)
      tCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGa                                                                                  <  2:5719005/93‑1 (MQ=255)
       cGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGAc                                                                                 <  2:6015930/93‑1 (MQ=255)
         aCATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACgg                                                                               >  2:6160849/1‑93 (MQ=255)
          cATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGc                                                                              <  2:6293341/93‑1 (MQ=255)
          cATCGGTACATCGCAGCTGGCGCAGGCAACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGc                                                                              <  1:1781716/93‑1 (MQ=255)
            tCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGGAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGt                                                                            >  2:5510885/1‑93 (MQ=255)
            tCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGt                                                                            >  1:2077497/1‑93 (MQ=255)
            tCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGt                                                                            >  2:2104563/1‑93 (MQ=255)
            tCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGt                                                                            >  1:3303976/1‑93 (MQ=255)
             cGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGtt                                                                           <  1:4300061/93‑1 (MQ=255)
              ggTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGttt                                                                          <  1:2273125/93‑1 (MQ=255)
              ggTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGttt                                                                          >  2:3566234/1‑93 (MQ=255)
               gTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGGGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTa                                                                         >  1:1669276/1‑93 (MQ=255)
                tACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTaa                                                                        <  1:5003389/93‑1 (MQ=255)
                tACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTaa                                                                        <  2:2720737/93‑1 (MQ=255)
                tACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTaa                                                                        <  1:999138/93‑1 (MQ=255)
                 aCATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAAc                                                                       <  1:785720/93‑1 (MQ=255)
                  cATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACg                                                                      <  1:615667/93‑1 (MQ=255)
                  cATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACg                                                                      >  1:5588358/1‑93 (MQ=255)
                  cATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACg                                                                      >  1:232891/1‑93 (MQ=255)
                   aTCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACgg                                                                     >  1:3884306/1‑93 (MQ=255)
                   aTCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACgg                                                                     >  2:747959/1‑93 (MQ=255)
                    tCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGc                                                                    <  1:1311789/93‑1 (MQ=255)
                    tCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGc                                                                    >  1:5878251/1‑93 (MQ=255)
                    tCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGc                                                                    >  1:263599/1‑93 (MQ=255)
                        aGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCg                                                                <  1:2361399/93‑1 (MQ=255)
                         gCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGt                                                               >  1:5656505/1‑93 (MQ=255)
                          cTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTg                                                              <  1:1922705/93‑1 (MQ=255)
                          cTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTg                                                              <  2:3226358/93‑1 (MQ=255)
                           tGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTgg                                                             <  2:4238235/93‑1 (MQ=255)
                            ggCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGga                                                            <  2:80599/93‑1 (MQ=255)
                            ggCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGga                                                            <  2:4872167/93‑1 (MQ=255)
                            ggCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGga                                                            >  1:281339/1‑93 (MQ=255)
                               gcAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAt                                                         <  2:2858889/93‑1 (MQ=255)
                               gcAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAt                                                         >  1:2156650/1‑93 (MQ=255)
                                cAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtg                                                        <  2:3187605/93‑1 (MQ=255)
                                 aGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtgg                                                       <  1:4859948/93‑1 (MQ=255)
                                 aGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtgg                                                       <  1:4377786/93‑1 (MQ=255)
                                  ggCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtggt                                                      <  2:69322/93‑1 (MQ=255)
                                   gCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtggtg                                                     <  2:5281096/93‑1 (MQ=255)
                                    cGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAtggtgg                                                    >  2:558334/1‑93 (MQ=255)
                                      aCCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGgcg                                                  >  2:2039269/1‑93 (MQ=255)
                                       ccAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGgcgc                                                 <  2:1171486/93‑1 (MQ=255)
                                        cAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCa                                                >  2:5042406/1‑93 (MQ=255)
                                        cAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCa                                                <  1:1163440/93‑1 (MQ=255)
                                          gTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGt                                              <  1:291776/93‑1 (MQ=255)
                                          gTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGt                                              <  2:2992607/93‑1 (MQ=255)
                                            gcgcACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGc                                            <  1:4430046/93‑1 (MQ=255)
                                               cacaCTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGaa                                         >  2:1752945/1‑93 (MQ=255)
                                               cacaCTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGaa                                         <  2:4672191/93‑1 (MQ=255)
                                               cacaCTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGaa                                         >  2:2763377/1‑93 (MQ=255)
                                               cacaCTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGaa                                         <  2:3475462/93‑1 (MQ=255)
                                                acacTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAat                                        <  2:3152581/93‑1 (MQ=255)
                                                 cacTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAata                                       >  1:4161565/1‑93 (MQ=255)
                                                  acTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAatat                                      <  1:3605983/93‑1 (MQ=255)
                                                  acTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAatat                                      >  2:329252/1‑93 (MQ=255)
                                                    tACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGTCCCGTGGAGATGGTGGCGCAGTGCGAATATGt                                    >  1:4561720/1‑93 (MQ=255)
                                                      cGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTc                                  <  2:840633/93‑1 (MQ=255)
                                                      cGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTc                                  <  2:3580713/93‑1 (MQ=255)
                                                      cGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTc                                  <  2:2459731/93‑1 (MQ=255)
                                                        cTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTccc                                <  1:5400252/93‑1 (MQ=255)
                                                        cTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTccc                                <  1:4715939/93‑1 (MQ=255)
                                                         tggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGACTATGTTCCcg                               >  2:2829151/1‑93 (MQ=255)
                                                         tggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcg                               >  2:1576871/1‑93 (MQ=255)
                                                         tggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcg                               >  1:4660653/1‑93 (MQ=255)
                                                         tggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcg                               >  2:3865151/1‑93 (MQ=255)
                                                          gttggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcgc                              <  1:6032136/91‑1 (MQ=255)
                                                          ggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcgc                              >  1:2554855/1‑93 (MQ=255)
                                                          ggtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcgc                              >  1:1427165/1‑93 (MQ=255)
                                                           gtggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCcgcg                             <  2:4759228/93‑1 (MQ=255)
                                                            tggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGt                            <  1:3518215/93‑1 (MQ=255)
                                                            tggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGt                            <  1:4170567/93‑1 (MQ=255)
                                                             ggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTc                           <  2:4037719/93‑1 (MQ=255)
                                                             ggAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTc                           <  1:93378/93‑1 (MQ=255)
                                                              gAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCg                          >  1:1088417/1‑93 (MQ=255)
                                                               aaaTTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGc                         >  2:3716390/1‑93 (MQ=255)
                                                                 aTTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAg                       <  2:5859468/93‑1 (MQ=255)
                                                                  ttGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAgg                      <  2:1663196/93‑1 (MQ=255)
                                                                   tGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGt                     <  2:1320353/93‑1 (MQ=255)
                                                                    gagaAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTg                    >  2:4591507/1‑93 (MQ=255)
                                                                    gagaAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTg                    <  1:5726225/93‑1 (MQ=255)
                                                                       aaGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGaaa                 <  1:1602429/93‑1 (MQ=255)
                                                                         gTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATc               <  1:2388590/93‑1 (MQ=255)
                                                                            cAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATg            >  2:540628/1‑93 (MQ=255)
                                                                             aaCGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGa           >  2:4508873/1‑93 (MQ=255)
                                                                                 gAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAc       >  1:348558/1‑93 (MQ=255)
                                                                                 gAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAc       <  1:4106066/93‑1 (MQ=255)
                                                                                 gAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAc       >  1:1459053/1‑93 (MQ=255)
                                                                                   aCAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGc     >  1:2517831/1‑93 (MQ=255)
                                                                                      gTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGa  <  1:1892056/93‑1 (MQ=255)
                                                                                      gTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGa  <  2:2151136/93‑1 (MQ=255)
                                                                                      gTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGa  >  1:5454648/1‑93 (MQ=255)
                                                                                          |                                                                                        
TGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGA  >  NC_000913/1060856‑1061034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGC  >  NC_000913/1060853‑1061038
                                                                                             |                                                                                            
TGTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGG                                                                                              <  SRR4302533.6318381/94‑1 (MQ=60)
TGTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGG                                                                                              >  SRR4302533.5359562/1‑94 (MQ=60)
TGTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGG                                                                                              >  SRR4302533.1732417/1‑94 (MQ=60)
 GTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGG                                                                                             <  SRR4302533.520880/94‑1 (MQ=60)
  TTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGC                                                                                            <  SRR4302533.3978338/94‑1 (MQ=60)
   TGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCA                                                                                           <  SRR4302533.2704769/94‑1 (MQ=60)
    GACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAG                                                                                          <  SRR4302533.3109347/94‑1 (MQ=60)
    GACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAG                                                                                          >  SRR4302533.2373281/1‑94 (MQ=60)
        ATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGA                                                                                      <  SRR4302533.5273435/94‑1 (MQ=60)
         TCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGAC                                                                                     <  SRR4302533.1815802/94‑1 (MQ=60)
             CATCGGTACATCGCAGCTGGCGCAGGCAACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCG                                                                                 <  SRR4302533.1792556/94‑1 (MQ=60)
              ATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGT                                                                                >  SRR4302533.3324380/1‑94 (MQ=60)
              ATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGT                                                                                >  SRR4302533.3615826/1‑94 (MQ=60)
              ATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGT                                                                                >  SRR4302533.2090283/1‑94 (MQ=60)
              ATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGT                                                                                >  SRR4302533.449544/1‑94 (MQ=60)
                CGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTT                                                                              >  SRR4302533.4778038/1‑94 (MQ=60)
                CGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTT                                                                              <  SRR4302533.2150888/94‑1 (MQ=60)
                CGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTT                                                                              <  SRR4302533.4325922/94‑1 (MQ=60)
                 GGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTA                                                                             <  SRR4302533.2287195/94‑1 (MQ=60)
                 GGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGGGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTA                                                                             >  SRR4302533.1679361/1‑94 (MQ=60)
                  GTACATCGCAGCTGGCGCAGGCGACCAGTACGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAA                                                                            <  SRR4302533.3020366/94‑1 (MQ=60)
                   TACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAAC                                                                           <  SRR4302533.1004970/94‑1 (MQ=60)
                   TACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAAC                                                                           <  SRR4302533.2343007/94‑1 (MQ=60)
                   TACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAAC                                                                           <  SRR4302533.5033714/94‑1 (MQ=60)
                    ACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACG                                                                          >  SRR4302533.5622122/1‑94 (MQ=60)
                    ACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACG                                                                          >  SRR4302533.234328/1‑94 (MQ=60)
                    ACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACG                                                                          <  SRR4302533.790340/94‑1 (MQ=60)
                     CATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGG                                                                         >  SRR4302533.3908006/1‑94 (MQ=60)
                     CATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGG                                                                         <  SRR4302533.619283/94‑1 (MQ=60)
                      ATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGC                                                                        >  SRR4302533.5913782/1‑94 (MQ=60)
                      ATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGC                                                                        >  SRR4302533.265197/1‑94 (MQ=60)
                       TCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCC                                                                       <  SRR4302533.1319662/94‑1 (MQ=60)
                         GCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCC                                                                     >  SRR4302533.6317540/1‑94 (MQ=60)
                           AGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGT                                                                   <  SRR4302533.2375987/94‑1 (MQ=60)
                           AGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGT                                                                   >  SRR4302533.5690687/1‑94 (MQ=60)
                             CTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGG                                                                 <  SRR4302533.1934439/94‑1 (MQ=60)
                              TGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGA                                                                >  SRR4302533.283060/1‑94 (MQ=60)
                              TGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACAGCCCCGCGGA                                                                >  SRR4302533.5525430/1‑94 (MQ=60)
                                 CGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAT                                                             <  SRR4302533.4432126/94‑1 (MQ=60)
                                 CGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGAT                                                             >  SRR4302533.2169928/1‑94 (MQ=60)
                                  GCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATG                                                            >  SRR4302533.4721622/1‑94 (MQ=60)
                                  GCAGGAGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATG                                                            <  SRR4302533.146274/94‑1 (MQ=60)
                                   CAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGG                                                           >  SRR4302533.5298383/1‑94 (MQ=60)
                                    AGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGT                                                          <  SRR4302533.4404215/94‑1 (MQ=60)
                                    AGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGT                                                          <  SRR4302533.4889406/94‑1 (MQ=60)
                                       CGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGC                                                       <  SRR4302533.5853353/94‑1 (MQ=60)
                                           CAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAG                                                   <  SRR4302533.1170418/94‑1 (MQ=60)
                                             GTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTG                                                 <  SRR4302533.293557/94‑1 (MQ=60)
                                               GCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCG                                               <  SRR4302533.4456825/94‑1 (MQ=60)
                                                CGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGA                                              >  SRR4302533.1714625/1‑94 (MQ=60)
                                                CGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGA                                              >  SRR4302533.2572835/1‑94 (MQ=60)
                                                 GCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAA                                             >  SRR4302533.4337732/1‑94 (MQ=60)
                                                 GCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAA                                             >  SRR4302533.5103406/1‑94 (MQ=60)
                                                   ACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATA                                           >  SRR4302533.4186783/1‑94 (MQ=60)
                                                     ACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATG                                         <  SRR4302533.3628177/94‑1 (MQ=60)
                                                      CTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGTCCCGTGGAGATGGTGGCGCAGTGCGAATATGT                                        >  SRR4302533.4589384/1‑94 (MQ=60)
                                                      CTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGT                                        >  SRR4302533.4101575/1‑94 (MQ=60)
                                                      CTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGT                                        >  SRR4302533.2270556/1‑94 (MQ=60)
                                                          GCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCC                                    >  SRR4302533.969347/1‑94 (MQ=60)
                                                           CTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCG                                   >  SRR4302533.4909043/1‑94 (MQ=60)
                                                           CTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCG                                   <  SRR4302533.4744525/94‑1 (MQ=60)
                                                           CTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCG                                   >  SRR4302533.4688897/1‑94 (MQ=60)
                                                           CTGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCG                                   <  SRR4302533.5432702/94‑1 (MQ=60)
                                                            TGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGC                                  >  SRR4302533.6001004/1‑94 (MQ=60)
                                                            TGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGC                                  >  SRR4302533.2570572/1‑94 (MQ=60)
                                                            TGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGC                                  <  SRR4302533.3512373/94‑1 (MQ=60)
                                                            TGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGC                                  >  SRR4302533.1435790/1‑94 (MQ=60)
                                                            TGGTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGC                                  <  SRR4302533.4137767/94‑1 (MQ=60)
                                                             GTTGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCG                                 <  SRR4302533.6068693/94‑1 (MQ=60)
                                                               TGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTC                               <  SRR4302533.3539905/94‑1 (MQ=60)
                                                               TGGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTC                               <  SRR4302533.4195838/94‑1 (MQ=60)
                                                                GGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCG                              <  SRR4302533.93967/94‑1 (MQ=60)
                                                                GGAAATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCG                              >  SRR4302533.1094827/1‑94 (MQ=60)
                                                                   AATTGAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAG                           <  SRR4302533.2414287/94‑1 (MQ=60)
                                                                       GAGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGA                       <  SRR4302533.5760796/94‑1 (MQ=60)
                                                                        AGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAA                      >  SRR4302533.2080178/1‑94 (MQ=60)
                                                                        AGAAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAA                      >  SRR4302533.4257048/1‑94 (MQ=60)
                                                                        AGAAGTACAACGGAACAGCGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGTATATGTTCCCGCGTCGCAGGTGAA                      >  SRR4302533.3215235/1‑94 (MQ=60)
                                                                          AAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAAT                    >  SRR4302533.2547739/1‑94 (MQ=60)
                                                                          AAGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAAT                    <  SRR4302533.1612133/94‑1 (MQ=60)
                                                                           AGTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATC                   <  SRR4302533.1350633/94‑1 (MQ=60)
                                                                            GTACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCA                  <  SRR4302533.2403345/94‑1 (MQ=60)
                                                                             TACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCAT                 <  SRR4302533.1502760/94‑1 (MQ=60)
                                                                             TACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCAT                 <  SRR4302533.1208934/94‑1 (MQ=60)
                                                                              ACAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATG                <  SRR4302533.1627479/94‑1 (MQ=60)
                                                                               CAACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGA               <  SRR4302533.5451566/94‑1 (MQ=60)
                                                                                AACGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGAC              >  SRR4302533.907228/1‑94 (MQ=60)
                                                                                  CGGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCA            >  SRR4302533.5687173/1‑94 (MQ=60)
                                                                                   GGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAC           >  SRR4302533.1467849/1‑94 (MQ=60)
                                                                                   GGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAC           >  SRR4302533.350686/1‑94 (MQ=60)
                                                                                   GGAACAGTGGGGCAGGTGACGGCGTTTAACGGCCACGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCAC           >  SRR4302533.6181997/1‑94 (MQ=60)
                                                                                    GAACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACG          <  SRR4302533.4131037/94‑1 (MQ=60)
                                                                                     AACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGC         >  SRR4302533.2533345/1‑94 (MQ=60)
                                                                                      ACAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCT        <  SRR4302533.3355020/94‑1 (MQ=60)
                                                                                       CAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTG       <  SRR4302533.1912739/94‑1 (MQ=60)
                                                                                       CAGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTG       >  SRR4302533.3796865/1‑94 (MQ=60)
                                                                                        AGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGA      >  SRR4302533.4594271/1‑94 (MQ=60)
                                                                                        AGTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGA      >  SRR4302533.5487507/1‑94 (MQ=60)
                                                                                         GTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGAC     <  SRR4302533.2850653/94‑1 (MQ=60)
                                                                                         GTGGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGAC     <  SRR4302533.1903603/94‑1 (MQ=60)
                                                                                           GGGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAG   <  SRR4302533.309313/94‑1 (MQ=60)
                                                                                            GGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGC  <  SRR4302533.4586714/94‑1 (MQ=60)
                                                                                            GGGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGC  >  SRR4302533.5603804/1‑94 (MQ=60)
                                                                                             |                                                                                            
TGTTGACCATCGACATCGGTACATCGCAGCTGGCGCAGGCGACCAGTGCGCACACTACGCTGGTGGAAATTGAGAAGTACAACGGAACAGTGGAGCAGGTGACGGCGTTTAACGGCCCCGTGGAGATGGTGGCGCAGTGCGAATATGTTCCCGCGTCGCAGGTGAAATCATGACCACGCTGACAGC  >  NC_000913/1060853‑1061038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑