Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,061,601	T→C	C194R (TGC→CGC)	torD →	TorD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,061,601	0	T	C	99.4%	1018.8 / ‑5.6	320	C194R (TGC→CGC)	torD	TorD
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (146/171); total (148/172)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 335 total aligned reads displayed.

TGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG  >  NC_000913/1061511‑1061690

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         <  2:7030033/93‑1 (MQ=255)

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         >  1:1321485/1‑93 (MQ=255)

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         >  2:8913854/1‑93 (MQ=255)

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         >  2:1200937/1‑93 (MQ=255)

 ggTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGcgcg                                                                                        >  1:4749110/1‑93 (MQ=255)

   ttACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGac                                                                                      >  1:5449513/1‑93 (MQ=255)

   ttACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGac                                                                                      >  2:8319692/1‑93 (MQ=255)

    tACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGacc                                                                                     >  1:5666906/1‑93 (MQ=255)

      ccAGAGTTTGTTGCGCGTTGTCGTCAGTATGACCGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGaccac                                                                                   <  1:9707303/93‑1 (MQ=255)

      ccAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGaccac                                                                                   <  1:5247890/93‑1 (MQ=255)

       cAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGaccacc                                                                                  >  1:6076023/1‑93 (MQ=255)

        agagTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGAccacca                                                                                 >  1:8509670/1‑93 (MQ=255)

           gTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCaaaa                                                                              >  1:7497423/1‑93 (MQ=255)

           gTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCaaaa                                                                              <  1:4573409/93‑1 (MQ=255)

            tttGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAc                                                                             >  1:10044248/1‑93 (MQ=255)

             ttgttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACa                                                                            <  2:6241908/93‑1 (MQ=255)

               gttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGa                                                                          >  1:2791140/1‑93 (MQ=255)

               gttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGa                                                                          <  1:1634431/93‑1 (MQ=255)

               gttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGa                                                                          >  1:1492186/1‑93 (MQ=255)

                ttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGAt                                                                         >  2:8280715/1‑93 (MQ=255)

                ttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGAt                                                                         <  2:4492371/93‑1 (MQ=255)

                ttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGAAGAGCGCGACCACCAAAACAAAt                                                                         <  1:8972461/93‑1 (MQ=255)

                  gcgcGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATaa                                                                       <  1:740002/93‑1 (MQ=255)

                  gcgcGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATaa                                                                       <  1:6541384/93‑1 (MQ=255)

                  gcgcGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATaa                                                                       <  1:5339048/93‑1 (MQ=255)

                    gcgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcg                                                                     <  2:9283540/93‑1 (MQ=255)

                    gcgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcg                                                                     <  1:5604454/93‑1 (MQ=255)

                     cgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgt                                                                    <  1:3966449/93‑1 (MQ=255)

                       ttGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtcg                                                                  <  1:5620749/93‑1 (MQ=255)

                       ttGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtcg                                                                  >  1:1624742/1‑93 (MQ=255)

                       ttGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtag                                                                  >  1:7700512/1‑91 (MQ=255)

                        tGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtcgt                                                                 >  2:6042535/1‑93 (MQ=255)

                           cgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtg                                                              <  2:1802404/93‑1 (MQ=255)

                           cgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtg                                                              <  1:3391199/93‑1 (MQ=255)

                             tcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgtg                                                            <  1:6954377/93‑1 (MQ=255)

                              cAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgc                                                           <  2:9797832/93‑1 (MQ=255)

                              cAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgc                                                           <  2:9858870/93‑1 (MQ=255)

                               aGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgcg                                                          >  2:3870941/1‑93 (MQ=255)

                                 tATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGcc                                                        >  1:4486227/1‑93 (MQ=255)

                                   tGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTg                                                      >  2:2368071/1‑93 (MQ=255)

                                   tGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTg                                                      >  2:4884956/1‑93 (MQ=255)

                                    gACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGa                                                     <  2:5637030/93‑1 (MQ=255)

                                     aCAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaa                                                    <  1:6301722/93‑1 (MQ=255)

                                      cAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaa                                                   >  1:2993766/1‑93 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  <  2:5991173/93‑1 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  <  1:3225743/93‑1 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  >  1:5068648/1‑93 (MQ=255)

                                        gCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAg                                                 >  1:6648041/1‑93 (MQ=255)

                                        gCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAg                                                 >  2:3111456/1‑93 (MQ=255)

                                         cTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGa                                                <  1:4190335/93‑1 (MQ=255)

                                         cTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGa                                                <  1:228062/93‑1 (MQ=255)

                                          tttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAc                                               <  1:9777865/93‑1 (MQ=255)

                                          tttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAc                                               <  1:5410367/93‑1 (MQ=255)

                                          tttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAc                                               <  2:461612/93‑1 (MQ=255)

                                             ggTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcgcg                                            >  1:241547/1‑93 (MQ=255)

                                              gTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGt                                           >  2:3585153/1‑93 (MQ=255)

                                              gTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGt                                           >  2:6650616/1‑93 (MQ=255)

                                              gTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGt                                           >  1:7984004/1‑93 (MQ=255)

                                               tttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGtt                                          <  2:8769453/93‑1 (MQ=255)

                                               tttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGtt                                          >  1:7168673/1‑93 (MQ=255)

                                                ttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGttt                                         <  2:4246438/93‑1 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        <  1:6926475/93‑1 (MQ=255)

                                                 tttACGCGGCACTAAACCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        <  2:9447067/93‑1 (MQ=255)

                                                     cgcgGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGt                                    <  2:7752838/93‑1 (MQ=255)

                                                          cACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCAt                               >  2:8088139/1‑93 (MQ=255)

                                                           aCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATc                              <  1:1677081/93‑1 (MQ=255)

                                                           aCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATc                              <  2:6747028/93‑1 (MQ=255)

                                                              aaGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAgg                           <  2:1609656/93‑1 (MQ=255)

                                                              aaGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAgg                           >  1:2598419/1‑93 (MQ=255)

                                                              aaGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAgg                           <  1:5966037/93‑1 (MQ=255)

                                                               aGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGc                          <  1:9218771/93‑1 (MQ=255)

                                                               aGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGc                          <  1:8295695/93‑1 (MQ=255)

                                                                gCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCa                         <  1:2040276/93‑1 (MQ=255)

                                                                  cAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAtt                       >  2:7566313/1‑93 (MQ=255)

                                                                   aGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                      <  1:2707188/93‑1 (MQ=255)

                                                                   aGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                      <  2:9613912/93‑1 (MQ=255)

                                                                   aGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                      >  1:9444336/1‑93 (MQ=255)

                                                                     ttATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATg                    >  2:8863678/1‑93 (MQ=255)

                                                                     ttATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATg                    <  2:2876029/93‑1 (MQ=255)

                                                                      tATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATgg                   <  2:3426656/93‑1 (MQ=255)

                                                                      tATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATgg                   <  2:8495836/93‑1 (MQ=255)

                                                                       aTTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgc                  <  1:3439323/93‑1 (MQ=255)

                                                                           cTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAg              <  2:8580383/93‑1 (MQ=255)

                                                                            tGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGt             <  2:7374256/93‑1 (MQ=255)

                                                                            tGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGt             <  1:1861894/93‑1 (MQ=255)

                                                                            tGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGt             <  2:504540/93‑1 (MQ=255)

                                                                            tGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGt             <  1:735173/93‑1 (MQ=255)

                                                                             ggTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGtt            <  2:5464833/93‑1 (MQ=255)

                                                                             ggTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGtt            <  2:5546681/93‑1 (MQ=255)

                                                                              gtgtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTg           <  2:2427861/93‑1 (MQ=255)

                                                                               tgtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGc          >  2:7236640/1‑93 (MQ=255)

                                                                               tgtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGc          >  2:909377/1‑93 (MQ=255)

                                                                                gtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGcc         <  1:4816465/93‑1 (MQ=255)

                                                                                gtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGcc         <  1:3838996/93‑1 (MQ=255)

                                                                                    ggggAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAt     <  2:7791481/91‑1 (MQ=255)

                                                                                    gTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAt     <  1:8812955/93‑1 (MQ=255)

                                                                                    gTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAt     <  1:9967600/93‑1 (MQ=255)

                                                                                    gTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAt     <  2:265769/93‑1 (MQ=255)

                                                                                     tGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATg    >  1:1137612/1‑93 (MQ=255)

                                                                                       gAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcg  <  2:2059194/93‑1 (MQ=255)

TGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG  >  NC_000913/1061511‑1061690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  NC_000913/1061508‑1061694

CAATGTTTACCAGAGTTTGTTGCGCGTTGTCGTCAGGATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               <  SRR4302540.2383603/94‑1 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               >  SRR4302540.3174060/1‑94 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               <  SRR4302540.7490994/94‑1 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               <  SRR4302540.3089477/94‑1 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               <  SRR4302540.3658870/94‑1 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               <  SRR4302540.2383601/94‑1 (MQ=60)

 AATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCG                                                                                              >  SRR4302540.52347/1‑94 (MQ=60)

 AATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCG                                                                                              <  SRR4302540.7616365/94‑1 (MQ=60)

  ATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGC                                                                                             <  SRR4302540.1679211/94‑1 (MQ=60)

  ATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGC                                                                                             >  SRR4302540.1335254/1‑94 (MQ=60)

   TGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCG                                                                                            >  SRR4302540.4799790/1‑94 (MQ=60)

    GGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGA                                                                                           >  SRR4302540.5211732/1‑94 (MQ=60)

     GTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGAC                                                                                          >  SRR4302540.5509483/1‑94 (MQ=60)

     GTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGAC                                                                                          <  SRR4302540.1653063/94‑1 (MQ=60)

     GTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGAC                                                                                          <  SRR4302540.5685539/94‑1 (MQ=60)

      TTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACC                                                                                         >  SRR4302540.7353828/1‑94 (MQ=60)

      TTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACC                                                                                         <  SRR4302540.1648835/94‑1 (MQ=60)

      TTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACC                                                                                         <  SRR4302540.8389883/94‑1 (MQ=60)

      TTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACC                                                                                         >  SRR4302540.5729314/1‑94 (MQ=60)

       TACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCA                                                                                        >  SRR4302540.9840439/1‑94 (MQ=60)

       TACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCA                                                                                        >  SRR4302540.7178714/1‑94 (MQ=60)

       TACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCA                                                                                        >  SRR4302540.9777805/1‑94 (MQ=60)

        ACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTACGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCAC                                                                                       >  SRR4302540.7535148/1‑94 (MQ=60)

        ACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCAC                                                                                       >  SRR4302540.35634/1‑94 (MQ=60)

        ACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCAC                                                                                       >  SRR4302540.7535147/1‑94 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACCGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      <  SRR4302540.9821392/94‑1 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      <  SRR4302540.5721861/94‑1 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      <  SRR4302540.5305129/94‑1 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      >  SRR4302540.6143589/1‑94 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      >  SRR4302540.6143587/1‑94 (MQ=60)

          CAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCA                                                                                     <  SRR4302540.2060918/94‑1 (MQ=60)

          CAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCA                                                                                     <  SRR4302540.1667216/94‑1 (MQ=60)

          CAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCA                                                                                     >  SRR4302540.8608564/1‑94 (MQ=60)

           AGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCTAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAA                                                                                    >  SRR4302540.4943710/1‑94 (MQ=60)

           AGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAA                                                                                    >  SRR4302540.7022862/1‑94 (MQ=60)

           AGAGTTTGTTGCGCGTTGTCATCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAA                                                                                    >  SRR4302540.9854281/1‑94 (MQ=60)

             AGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAA                                                                                  >  SRR4302540.7581184/1‑94 (MQ=60)

             AGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAA                                                                                  >  SRR4302540.7581185/1‑94 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 <  SRR4302540.4622755/94‑1 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 <  SRR4302540.6733683/94‑1 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 >  SRR4302540.9287192/1‑94 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 <  SRR4302540.3965696/94‑1 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 >  SRR4302540.5398134/1‑94 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 >  SRR4302540.10161018/1‑94 (MQ=60)

              GTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAAC                                                                                 <  SRR4302540.5243483/94‑1 (MQ=60)

                 TGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGA                                                                              >  SRR4302540.1508600/1‑94 (MQ=60)

                 TGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGA                                                                              >  SRR4302540.2821277/1‑94 (MQ=60)

                  GTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGAT                                                                             <  SRR4302540.1652310/94‑1 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            <  SRR4302540.2642584/94‑1 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            >  SRR4302540.5586455/1‑94 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            >  SRR4302540.7439025/1‑94 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGAAGAGCGCGACCACCAAAACAAATA                                                                            <  SRR4302540.9079055/94‑1 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTAGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            <  SRR4302540.1490130/94‑1 (MQ=60)

                    TGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAA                                                                           <  SRR4302540.1670576/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          <  SRR4302540.5397585/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          <  SRR4302540.747900/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          <  SRR4302540.6613972/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          >  SRR4302540.2408362/1‑94 (MQ=60)

                      CGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTGGGGGAGCGCGACCACCAAAACAGATAACG                                                                         >  SRR4302540.3011581/1‑94 (MQ=60)

                       GCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGT                                                                        <  SRR4302540.5666118/94‑1 (MQ=60)

                        CGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTC                                                                       >  SRR4302540.6226358/1‑94 (MQ=60)

                        CGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTC                                                                       <  SRR4302540.4009210/94‑1 (MQ=60)

                        CGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTC                                                                       >  SRR4302540.3339507/1‑94 (MQ=60)

                         GTTGTCGTCAGTATTACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      <  SRR4302540.3181154/94‑1 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      >  SRR4302540.943431/1‑94 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      >  SRR4302540.1642538/1‑94 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      >  SRR4302540.1642539/1‑94 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      <  SRR4302540.483975/94‑1 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTAG                                                                      >  SRR4302540.7788464/1‑94 (MQ=60)

                          TTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGT                                                                     <  SRR4302540.5682591/94‑1 (MQ=60)

                          TTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGT                                                                     <  SRR4302540.451319/94‑1 (MQ=60)

                           TGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTT                                                                    <  SRR4302540.372656/94‑1 (MQ=60)

                           TGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTT                                                                    >  SRR4302540.459139/1‑94 (MQ=60)

                           TGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTT                                                                    <  SRR4302540.9810621/94‑1 (MQ=60)

                            GTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGGGTTAGTGGAGCGCGACCACCAAAACAGATAACGCCGTTT                                                                   >  SRR4302540.926954/1‑94 (MQ=60)

                              cgtgcGTATGACCGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGT                                                                 <  SRR4302540.2336151/89‑1 (MQ=60)

                              CGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGT                                                                 <  SRR4302540.3428197/94‑1 (MQ=60)

                              CGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGT                                                                 >  SRR4302540.5163421/1‑94 (MQ=60)

                               GTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTG                                                                >  SRR4302540.7940842/1‑94 (MQ=60)

                               GTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTG                                                                <  SRR4302540.1815480/94‑1 (MQ=60)

                                TCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGC                                                               <  SRR4302540.1192065/94‑1 (MQ=60)

                                TCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGC                                                               <  SRR4302540.7031748/94‑1 (MQ=60)

                                TCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGC                                                               <  SRR4302540.4904912/94‑1 (MQ=60)

                                 CAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                              >  SRR4302540.4571778/1‑94 (MQ=60)

                                 CAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                              >  SRR4302540.7055628/1‑94 (MQ=60)

                                  AGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGC                                                             >  SRR4302540.2749874/1‑94 (MQ=60)

                                   GTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCC                                                            >  SRR4302540.4534887/1‑94 (MQ=60)

                                    TATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCT                                                           <  SRR4302540.1018697/94‑1 (MQ=60)

                                      TGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGA                                                         >  SRR4302540.2579652/1‑94 (MQ=60)

                                        ACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAA                                                       >  SRR4302540.635802/1‑94 (MQ=60)

                                        ACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAA                                                       <  SRR4302540.6371902/94‑1 (MQ=60)

                                        ACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAA                                                       >  SRR4302540.3026769/1‑94 (MQ=60)

                                         CAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAA                                                      >  SRR4302540.5123449/1‑94 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     >  SRR4302540.6768704/1‑94 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     <  SRR4302540.8966650/94‑1 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     >  SRR4302540.6721583/1‑94 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     <  SRR4302540.3260808/94‑1 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     >  SRR4302540.3395026/1‑94 (MQ=60)

                                           GCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGA                                                    >  SRR4302540.2814518/1‑94 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   <  SRR4302540.4235902/94‑1 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   <  SRR4302540.230267/94‑1 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   >  SRR4302540.5497050/1‑94 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   >  SRR4302540.5497049/1‑94 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  <  SRR4302540.7611706/94‑1 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  <  SRR4302540.9892479/94‑1 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  <  SRR4302540.5469853/94‑1 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  <  SRR4302540.4190829/94‑1 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  >  SRR4302540.9600870/1‑94 (MQ=60)

                                              TTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGC                                                 >  SRR4302540.4713625/1‑94 (MQ=60)

                                               TGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCG                                                >  SRR4302540.221384/1‑94 (MQ=60)

                                               TGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCG                                                >  SRR4302540.243881/1‑94 (MQ=60)

                                               TGGTTTTTACGCGGCACTAAGCAAGTTATTTCTGGTGTTAGTGGCGCGCGAGCAACACACAAGATAACGTCGTTTGTGCGCCTGAAAAGAAGCG                                                >  SRR4302540.243880/1‑94 (MQ=44)

                                               TGGTTGTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCG                                                <  SRR4302540.7100484/94‑1 (MQ=60)

                                                GGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGT                                               >  SRR4302540.8076985/1‑94 (MQ=60)

                                                 GTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTT                                              >  SRR4302540.7248589/1‑94 (MQ=60)

                                                 GTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTT                                              <  SRR4302540.5439746/94‑1 (MQ=60)

                                                  TTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTT                                             >  SRR4302540.1603896/1‑94 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            <  SRR4302540.8849589/94‑1 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            >  SRR4302540.5701502/1‑94 (MQ=60)

                                                    TTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAG                                           >  SRR4302540.3114702/1‑94 (MQ=60)

                                                    TTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAG                                           <  SRR4302540.7003562/94‑1 (MQ=60)

                                                     TTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGC                                          <  SRR4302540.9474785/94‑1 (MQ=60)

                                                     TTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGCTTAGC                                          >  SRR4302540.8919852/1‑94 (MQ=60)

                                                       ACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGT                                        <  SRR4302540.5669014/94‑1 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGAGACCACCACAACAGATAACGTCGTTTGTGCGCCTGAAAAGATGCGTTTAGTGTCG                                      >  SRR4302540.7931109/1‑94 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAACAGACGCGTTTAGCGTCG                                      >  SRR4302540.2207420/1‑94 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCG                                      <  SRR4302540.6077936/94‑1 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCG                                      <  SRR4302540.2659970/94‑1 (MQ=60)

                                                          CGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGC                                     >  SRR4302540.7736853/1‑94 (MQ=60)

                                                            GCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCAT                                   <  SRR4302540.7399338/94‑1 (MQ=60)

                                                             CACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATC                                  <  SRR4302540.4723390/94‑1 (MQ=60)

                                                              CCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 <  SRR4302540.481169/94‑1 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 >  SRR4302540.5981865/1‑94 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 >  SRR4302540.4055629/1‑94 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 <  SRR4302540.1695296/94‑1 (MQ=60)

                                                               CTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAG                                <  SRR4302540.1353618/94‑1 (MQ=60)

                                                               CTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAG                                <  SRR4302540.6561194/94‑1 (MQ=60)

                                                               CTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAG                                <  SRR4302540.2261676/94‑1 (MQ=60)

                                                                TAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGG                               <  SRR4302540.8443519/94‑1 (MQ=60)

                                                                TAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGG                               <  SRR4302540.8443520/94‑1 (MQ=60)

                                                                TAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGG                               >  SRR4302540.2626440/1‑94 (MQ=60)

                                                                 AAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGC                              <  SRR4302540.6032050/94‑1 (MQ=60)

                                                                  AGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCA                             <  SRR4302540.5487900/94‑1 (MQ=60)

                                                                  AGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCA                             <  SRR4302540.9329348/94‑1 (MQ=60)

                                                                  AGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCA                             <  SRR4302540.8392024/94‑1 (MQ=60)

                                                                   GCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAT                            <  SRR4302540.2062260/94‑1 (MQ=60)

                                                                   GCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAT                            <  SRR4302540.4045428/94‑1 (MQ=60)

                                                                    CCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCCTCAGGCATT                           >  SRR4302540.890772/1‑94 (MQ=60)

                                                                    CCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATT                           <  SRR4302540.6930305/94‑1 (MQ=60)

                                                                    CCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATT                           >  SRR4302540.6690163/1‑94 (MQ=60)

                                                                     CAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTA                          >  SRR4302540.9556458/1‑94 (MQ=60)

                                                                     CAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTA                          <  SRR4302540.3651629/94‑1 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         >  SRR4302540.1130365/1‑94 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302540.8387179/94‑1 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302540.8387180/94‑1 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302540.2736385/94‑1 (MQ=60)

                                                                       GTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATG                        <  SRR4302540.1558481/94‑1 (MQ=60)

                                                                       GTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATG                        >  SRR4302540.2943955/1‑94 (MQ=60)

                                                                          ATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCG                     >  SRR4302540.2447478/1‑94 (MQ=60)

                                                                          ATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCG                     <  SRR4302540.3476711/94‑1 (MQ=60)

                                                                             GCTGGTGTTAGTGGAGCGCGACCCCCAAAACAGATAACGTCGTTTGGCCGCCTCAAAAGACGCGTTTAGCGTCGCttcagcaatcatgcggcag                  >  SRR4302540.7840906/1‑75 (MQ=60)

                                                                             GCTGGTGTTAGTGGAGCGCGACCACCAAACCAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAG                  <  SRR4302540.8744296/94‑1 (MQ=60)

                                                                               TGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTT                <  SRR4302540.1882308/94‑1 (MQ=60)

                                                                               TGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTT                <  SRR4302540.743032/94‑1 (MQ=60)

                                                                               TGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTT                <  SRR4302540.3937637/94‑1 (MQ=60)

                                                                                 GTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGC              >  SRR4302540.5671291/1‑94 (MQ=60)

                                                                                  TGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCC             >  SRR4302540.9915758/1‑94 (MQ=60)

                                                                                  TGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCC             <  SRR4302540.700882/94‑1 (MQ=60)

                                                                                  TGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCC             <  SRR4302540.205189/94‑1 (MQ=60)

                                                                                  TGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCC             <  SRR4302540.531757/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            >  SRR4302540.4369057/1‑94 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            <  SRR4302540.1215608/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            <  SRR4302540.3880748/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            >  SRR4302540.4701230/1‑94 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            <  SRR4302540.4868021/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            <  SRR4302540.5796449/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            >  SRR4302540.6153900/1‑94 (MQ=60)

                                                                                    TTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGG           <  SRR4302540.6672552/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302540.5543566/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302540.7464684/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         >  SRR4302540.3464413/1‑94 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302540.1439029/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAG         >  SRR4302540.3464416/1‑94 (MQ=60)

                                                                                      AGTGGAGCGCGACAACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302540.2359834/94‑1 (MQ=60)

                                                                                       GTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATG        <  SRR4302540.8914852/94‑1 (MQ=60)

                                                                                       GTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATG        <  SRR4302540.10083884/94‑1 (MQ=60)

                                                                                       GTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATG        <  SRR4302540.10083885/94‑1 (MQ=60)

                                                                                       GTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATG        >  SRR4302540.1149489/1‑94 (MQ=60)

                                                                                       GTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATG        <  SRR4302540.5320366/94‑1 (MQ=60)

                                                                                        TGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGC       <  SRR4302540.1872081/94‑1 (MQ=60)

                                                                                         GGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG      <  SRR4302540.2656299/94‑1 (MQ=60)

                                                                                         GGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG      <  SRR4302540.3135617/94‑1 (MQ=60)

                                                                                         GGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG      <  SRR4302540.657454/94‑1 (MQ=60)

                                                                                             CGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  SRR4302540.6676075/1‑94 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  NC_000913/1061508‑1061694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`