Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,061,601	T→C	C194R (TGC→CGC)	torD →	TorD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,061,601	0	T	C	100.0%	696.6 / NA	216	C194R (TGC→CGC)	torD	TorD
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (106/110); total (106/110)

Only 100 of 222 total aligned reads displayed.

TGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG  >  NC_000913/1061511‑1061690

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         >  1:4933743/1‑93 (MQ=255)

tGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAgcgc                                                                                         >  1:2645457/1‑93 (MQ=255)

 ggTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGcgcg                                                                                        <  1:1372767/93‑1 (MQ=255)

  gTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGa                                                                                       >  2:4873716/1‑93 (MQ=255)

  gTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGa                                                                                       >  2:2385246/1‑93 (MQ=255)

   ttACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGac                                                                                      <  2:3165837/93‑1 (MQ=255)

    tACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGacc                                                                                     <  1:75303/93‑1 (MQ=255)

       cAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGaccacc                                                                                  >  1:4074130/1‑93 (MQ=255)

       cAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGaccacc                                                                                  >  2:5293332/1‑93 (MQ=255)

           gTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCaaaa                                                                              >  2:2321905/1‑93 (MQ=255)

             ttgttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACa                                                                            <  1:1039519/93‑1 (MQ=255)

               gttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGa                                                                          >  2:214530/1‑93 (MQ=255)

                ttgCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGAt                                                                         <  1:573990/93‑1 (MQ=255)

                ttgCGCGTTGTCGTCAGCATGACAGCTTTGGTTTTTACGCGGCACTAAGCCGGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGAt                                                                         <  2:1806109/93‑1 (MQ=255)

                 tgCGCGTTGTCGTCAGAATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATa                                                                        >  1:3906129/1‑93 (MQ=255)

                   cgcgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAc                                                                      >  1:507351/1‑93 (MQ=255)

                     cgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgt                                                                    <  1:4218591/93‑1 (MQ=255)

                     cgTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgt                                                                    <  2:6153942/93‑1 (MQ=255)

                      gTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtc                                                                   <  2:1440960/93‑1 (MQ=255)

                       ttGTCGTCAGTATGACAGCTTTGGTTTTTACACGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAcgtcg                                                                  <  1:577744/93‑1 (MQ=255)

                         gtcgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGtt                                                                <  2:1755910/93‑1 (MQ=255)

                          tcgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGttt                                                               >  1:4961473/1‑93 (MQ=255)

                          tcgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGttt                                                               >  2:4077042/1‑93 (MQ=255)

                          tcgtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGttt                                                               >  1:1397346/1‑93 (MQ=255)

                            gtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgt                                                             >  1:1155165/1‑93 (MQ=255)

                            gtcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGACAGCTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgt                                                             >  2:3778770/1‑93 (MQ=255)

                             tcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgtg                                                            <  2:1018056/93‑1 (MQ=255)

                             tcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgtg                                                            >  2:1086093/1‑93 (MQ=255)

                             tcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgtg                                                            >  2:1268176/1‑93 (MQ=255)

                             tcAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTtgtg                                                            >  2:3531818/1‑93 (MQ=255)

                              cAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgc                                                           >  2:5549763/1‑93 (MQ=255)

                              cAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgc                                                           <  1:1693013/93‑1 (MQ=255)

                               aGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTgcg                                                          >  2:276467/1‑93 (MQ=255)

                                 tATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGcc                                                        <  1:5324052/93‑1 (MQ=255)

                                  aTGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGATCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCt                                                       <  1:6236715/93‑1 (MQ=255)

                                      cAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaa                                                   >  1:5446817/1‑93 (MQ=255)

                                      cAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaa                                                   <  1:760942/93‑1 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  >  1:3514872/1‑93 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  >  2:4269286/1‑93 (MQ=255)

                                       aGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  <  1:2471283/93‑1 (MQ=255)

                                       aGCTTTGGTTGTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGaaaa                                                  <  2:1650629/93‑1 (MQ=255)

                                        gCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAg                                                 >  2:1469055/1‑93 (MQ=255)

                                         cTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGa                                                <  1:5919823/93‑1 (MQ=255)

                                           ttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcg                                              >  2:903844/1‑93 (MQ=255)

                                           ttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcg                                              <  2:1197529/93‑1 (MQ=255)

                                           ttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcg                                              <  1:296659/93‑1 (MQ=255)

                                           ttGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcg                                              >  1:3718448/1‑93 (MQ=255)

                                            tGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcgc                                             >  2:796723/1‑93 (MQ=255)

                                             ggTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAcgcg                                            >  1:5546226/1‑93 (MQ=255)

                                              gTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGt                                           <  2:3304178/93‑1 (MQ=255)

                                               tttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGtt                                          >  2:3690749/1‑93 (MQ=255)

                                               tttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGtt                                          >  1:688392/1‑93 (MQ=255)

                                                ttttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGttt                                         >  2:5963259/1‑93 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        <  1:2934238/93‑1 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        >  2:2118618/1‑93 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        >  1:1419096/1‑93 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        >  1:3478271/1‑93 (MQ=255)

                                                 tttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTa                                        <  1:3450277/93‑1 (MQ=255)

                                                  ttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAg                                       <  1:5470796/93‑1 (MQ=255)

                                                  ttACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAg                                       <  1:3196332/93‑1 (MQ=255)

                                                      gcgGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTc                                   >  1:3994154/1‑93 (MQ=255)

                                                      gcgGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTc                                   <  1:4524166/93‑1 (MQ=255)

                                                       cgGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCg                                  <  1:4568677/93‑1 (MQ=255)

                                                         gCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCa                                >  2:5147133/1‑93 (MQ=255)

                                                          cACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCAt                               <  1:269514/93‑1 (MQ=255)

                                                          cACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGGTTAGCGTCGCAt                               >  1:887642/1‑93 (MQ=255)

                                                           aCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATc                              <  1:4865021/93‑1 (MQ=255)

                                                           aCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATc                              <  1:5998042/93‑1 (MQ=255)

                                                             tAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAg                            >  1:3782786/1‑93 (MQ=255)

                                                              aaGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAgg                           >  2:2963715/1‑93 (MQ=255)

                                                                gCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCa                         >  2:5029442/1‑93 (MQ=255)

                                                                gCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCa                         <  1:1645315/93‑1 (MQ=255)

                                                                 ccAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAt                        <  2:4926395/93‑1 (MQ=255)

                                                                   aGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                      <  1:5337770/93‑1 (MQ=255)

                                                                   aGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                      >  1:6075487/1‑93 (MQ=255)

                                                                    gTTATTGCTGGTGTTAGTGGAGCGCGACCCCCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAt                     <  1:612587/93‑1 (MQ=255)

                                                                    gTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAt                     >  2:5864110/1‑93 (MQ=255)

                                                                     ttATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATg                    >  2:5478891/1‑93 (MQ=255)

                                                                      tATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATgg                   >  2:4200334/1‑93 (MQ=255)

                                                                      tATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATgg                   <  1:3128064/93‑1 (MQ=255)

                                                                       aTTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgc                  <  2:2824351/93‑1 (MQ=255)

                                                                       aTTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgc                  <  2:3948627/93‑1 (MQ=255)

                                                                        ttGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgcg                 >  2:2541848/1‑93 (MQ=255)

                                                                          gCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCa               <  2:448809/93‑1 (MQ=255)

                                                                            tGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGt             <  2:1209041/93‑1 (MQ=255)

                                                                             ggTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGtt            >  1:1939194/1‑93 (MQ=255)

                                                                             ggTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGtt            <  1:2291292/93‑1 (MQ=255)

                                                                              gtgtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAATACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTg           <  1:1990292/93‑1 (MQ=255)

                                                                               tgtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGc          >  1:4163712/1‑93 (MQ=255)

                                                                                gtTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGcc         <  1:1520251/93‑1 (MQ=255)

                                                                                   aGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGa      <  1:3281096/93‑1 (MQ=255)

                                                                                    gTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAt     <  2:4652227/93‑1 (MQ=255)

                                                                                     tGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATg    >  2:3617175/1‑93 (MQ=255)

                                                                                      ggAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgc   <  2:4821930/93‑1 (MQ=255)

                                                                                      ggAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgc   <  1:3047711/93‑1 (MQ=255)

                                                                                      ggAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgc   >  1:3694797/1‑93 (MQ=255)

                                                                                      ggAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgc   <  1:438756/93‑1 (MQ=255)

                                                                                       gAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcg  <  2:3395/93‑1 (MQ=255)

                                                                                       gAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcg  <  2:6266414/93‑1 (MQ=255)

                                                                                       gAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcg  <  1:5253394/93‑1 (MQ=255)

TGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG  >  NC_000913/1061511‑1061690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  NC_000913/1061508‑1061694

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               >  SRR4302533.2546957/1‑94 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGC                                                                                               >  SRR4302533.2554918/1‑94 (MQ=60)

 AATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCG                                                                                              >  SRR4302533.5226637/1‑94 (MQ=60)

 AATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCG                                                                                              >  SRR4302533.4256399/1‑94 (MQ=60)

  ATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGC                                                                                             >  SRR4302533.4963619/1‑94 (MQ=60)

  ATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGC                                                                                             >  SRR4302533.2661712/1‑94 (MQ=60)

    GGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGA                                                                                           <  SRR4302533.1381025/94‑1 (MQ=60)

     GTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGAC                                                                                          >  SRR4302533.3999525/1‑94 (MQ=60)

      TTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGTGGCGCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACC                                                                                         >  SRR4302533.1420754/1‑94 (MQ=60)

       TACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCA                                                                                        <  SRR4302533.75792/94‑1 (MQ=60)

       TACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCA                                                                                        >  SRR4302533.5252734/1‑94 (MQ=60)

        ACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCAC                                                                                       >  SRR4302533.2400801/1‑94 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      <  SRR4302533.4170675/94‑1 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      >  SRR4302533.4098933/1‑94 (MQ=60)

         CCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACC                                                                                      >  SRR4302533.5430654/1‑94 (MQ=60)

            GAGTTTGTTGCCCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCGCTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAA                                                                                   <  SRR4302533.168124/94‑1 (MQ=60)

             AGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAA                                                                                  >  SRR4302533.1399995/1‑94 (MQ=60)

                TTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAG                                                                               <  SRR4302533.6005418/94‑1 (MQ=60)

                TTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAG                                                                               <  SRR4302533.1045629/94‑1 (MQ=60)

                 TGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGA                                                                              <  SRR4302533.1726176/94‑1 (MQ=60)

                   TTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            <  SRR4302533.577376/94‑1 (MQ=60)

                   TTGCGCGTTGTCGTCAGAATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATA                                                                            >  SRR4302533.3929991/1‑94 (MQ=60)

                    TGCTCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGTCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAA                                                                           <  SRR4302533.5852838/94‑1 (MQ=60)

                    TGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAA                                                                           <  SRR4302533.713550/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          >  SRR4302533.5784265/1‑94 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          <  SRR4302533.4481632/94‑1 (MQ=60)

                     GCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAAC                                                                          >  SRR4302533.510363/1‑94 (MQ=60)

                      CGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACG                                                                         >  SRR4302533.5489932/1‑94 (MQ=60)

                        CGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTC                                                                       <  SRR4302533.4244106/94‑1 (MQ=60)

                        CGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTC                                                                       <  SRR4302533.2983723/94‑1 (MQ=60)

                         GTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTACTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCG                                                                      <  SRR4302533.3407037/94‑1 (MQ=60)

                          TTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGT                                                                     >  SRR4302533.5927681/1‑94 (MQ=60)

                          TTGTCGTCAGTATGACAGCTTTGGTTTTTACACGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGT                                                                     <  SRR4302533.581149/94‑1 (MQ=60)

                            GTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTT                                                                   >  SRR4302533.4991556/1‑94 (MQ=60)

                            GTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTT                                                                   >  SRR4302533.1405767/1‑94 (MQ=60)

                              CGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGT                                                                 >  SRR4302533.3828306/1‑94 (MQ=60)

                              CGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGT                                                                 >  SRR4302533.1162094/1‑94 (MQ=60)

                                 CAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                              <  SRR4302533.5012780/94‑1 (MQ=60)

                                 CAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                              <  SRR4302533.1703268/94‑1 (MQ=60)

                                 CAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                              <  SRR4302533.2623680/94‑1 (MQ=60)

                                    TATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCT                                                           <  SRR4302533.5355960/94‑1 (MQ=60)

                                     ATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGATCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTG                                                          <  SRR4302533.6274061/94‑1 (MQ=60)

                                     ATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTG                                                          <  SRR4302533.5450420/94‑1 (MQ=60)

                                       GACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAA                                                        <  SRR4302533.2259073/94‑1 (MQ=60)

                                        ACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAA                                                       >  SRR4302533.5479630/1‑94 (MQ=60)

                                         CAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAA                                                      <  SRR4302533.765419/94‑1 (MQ=60)

                                         CAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAA                                                      >  SRR4302533.3536537/1‑94 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     <  SRR4302533.5344330/94‑1 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     <  SRR4302533.2486525/94‑1 (MQ=60)

                                          AGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAG                                                     >  SRR4302533.1335687/1‑94 (MQ=60)

                                           GCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGNCCACCAAANCAGATANNNTCGTTTGTGCGCNTNNNANGA                                                    >  SRR4302533.1486217/1‑94 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   <  SRR4302533.5955606/94‑1 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   >  SRR4302533.91837/1‑94 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   >  SRR4302533.3477055/1‑94 (MQ=60)

                                            CTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAC                                                   <  SRR4302533.6103020/94‑1 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  >  SRR4302533.6247373/1‑94 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  >  SRR4302533.2296606/1‑94 (MQ=60)

                                             TTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACG                                                  >  SRR4302533.3741271/1‑94 (MQ=60)

                                              TTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGC                                                 <  SRR4302533.1455336/94‑1 (MQ=60)

                                              TTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGC                                                 <  SRR4302533.298475/94‑1 (MQ=60)

                                               TGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCG                                                >  SRR4302533.5579723/1‑94 (MQ=60)

                                               TGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCG                                                >  SRR4302533.3137703/1‑94 (MQ=60)

                                                 GTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTT                                              >  SRR4302533.692462/1‑94 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            >  SRR4302533.1427683/1‑94 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            <  SRR4302533.5575026/94‑1 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            <  SRR4302533.76133/94‑1 (MQ=60)

                                                   TTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTA                                            >  SRR4302533.3499732/1‑94 (MQ=60)

                                                    TTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAG                                           <  SRR4302533.3471582/94‑1 (MQ=60)

                                                    TTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAG                                           <  SRR4302533.4428596/94‑1 (MQ=60)

                                                    TTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAG                                           <  SRR4302533.2952179/94‑1 (MQ=60)

                                                     TTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGC                                          <  SRR4302533.2817056/94‑1 (MQ=60)

                                                     TTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGC                                          <  SRR4302533.5503767/94‑1 (MQ=60)

                                                     TTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGC                                          <  SRR4302533.3216000/94‑1 (MQ=60)

                                                      TACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCG                                         >  SRR4302533.4060127/1‑94 (MQ=60)

                                                      TACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCG                                         <  SRR4302533.2701147/94‑1 (MQ=60)

                                                        CGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTC                                       >  SRR4302533.4018474/1‑94 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCG                                      <  SRR4302533.4218881/94‑1 (MQ=60)

                                                         GCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCG                                      <  SRR4302533.4551554/94‑1 (MQ=60)

                                                          CGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGC                                     <  SRR4302533.4596367/94‑1 (MQ=60)

                                                           GGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCA                                    >  SRR4302533.622490/1‑94 (MQ=60)

                                                           GGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCA                                    >  SRR4302533.828571/1‑94 (MQ=60)

                                                            GCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGGTTAGCGTCGCAT                                   >  SRR4302533.892852/1‑94 (MQ=60)

                                                             CACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATC                                  <  SRR4302533.4284546/94‑1 (MQ=60)

                                                             CACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATC                                  <  SRR4302533.271151/94‑1 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 <  SRR4302533.4894504/94‑1 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 >  SRR4302533.5366731/1‑94 (MQ=60)

                                                              ACTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCA                                 <  SRR4302533.6034369/94‑1 (MQ=60)

                                                               CTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAG                                <  SRR4302533.965205/94‑1 (MQ=60)

                                                               CTAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAG                                >  SRR4302533.3805953/1‑94 (MQ=60)

                                                                TAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGG                               <  SRR4302533.2998191/94‑1 (MQ=60)

                                                                TAAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGG                               >  SRR4302533.3515917/1‑94 (MQ=60)

                                                                 AAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGC                              >  SRR4302533.6288418/1‑94 (MQ=60)

                                                                 AAGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGA                              >  SRR4302533.5042903/1‑94 (MQ=60)

                                                                  AGCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCA                             >  SRR4302533.4717629/1‑94 (MQ=60)

                                                                   GCCAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAT                            <  SRR4302533.1655277/94‑1 (MQ=60)

                                                                     CAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTA                          >  SRR4302533.6112236/1‑94 (MQ=60)

                                                                     CAGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTA                          >  SRR4302533.5708639/1‑94 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302533.325252/94‑1 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302533.1979479/94‑1 (MQ=60)

                                                                      AGTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTAT                         <  SRR4302533.5369773/94‑1 (MQ=60)

                                                                       GTTATTGCTGGTGTTAGTGGAGCGCGACCCCCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATG                        <  SRR4302533.616188/94‑1 (MQ=60)

                                                                       GTTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATG                        <  SRR4302533.616187/94‑1 (MQ=60)

                                                                        TTATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGG                       >  SRR4302533.1051882/1‑94 (MQ=60)

                                                                         TATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGC                      <  SRR4302533.3593783/94‑1 (MQ=60)

                                                                         TATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGC                      <  SRR4302533.3725334/94‑1 (MQ=60)

                                                                         TATTGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGC                      <  SRR4302533.3147295/94‑1 (MQ=60)

                                                                            TGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCA                   >  SRR4302533.1599938/1‑94 (MQ=60)

                                                                            TGCTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCA                   <  SRR4302533.4583304/94‑1 (MQ=60)

                                                                              CTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGT                 >  SRR4302533.3241363/1‑94 (MQ=60)

                                                                              CTGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGT                 >  SRR4302533.2948996/1‑94 (MQ=60)

                                                                               TGGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTT                >  SRR4302533.1951019/1‑94 (MQ=60)

                                                                                GGTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTG               <  SRR4302533.2305480/94‑1 (MQ=60)

                                                                                 GTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAATACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGC              <  SRR4302533.2002481/94‑1 (MQ=60)

                                                                                 GTGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGC              >  SRR4302533.4188938/1‑94 (MQ=60)

                                                                                  TGTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGCTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCC             >  SRR4302533.3184177/1‑94 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            <  SRR4302533.1529404/94‑1 (MQ=60)

                                                                                   GTTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCG            >  SRR4302533.3585604/1‑94 (MQ=60)

                                                                                    TTAGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGGCGG           >  SRR4302533.3798455/1‑94 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302533.1461584/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302533.4981751/94‑1 (MQ=60)

                                                                                      AGTGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGAT         <  SRR4302533.3301352/94‑1 (MQ=60)

                                                                                        TGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGC       >  SRR4302533.3717490/1‑94 (MQ=60)

                                                                                        TGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGC       <  SRR4302533.4933401/94‑1 (MQ=60)

                                                                                        TGGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGC       >  SRR4302533.408584/1‑94 (MQ=60)

                                                                                         GGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG      <  SRR4302533.441372/94‑1 (MQ=60)

                                                                                         GGAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCG      <  SRR4302533.3066370/94‑1 (MQ=60)

                                                                                          GAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGG     <  SRR4302533.5284957/94‑1 (MQ=60)

                                                                                          GAGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGG     >  SRR4302533.5198234/1‑94 (MQ=60)

                                                                                           AGCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGC    >  SRR4302533.2509193/1‑94 (MQ=60)

                                                                                            GCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCG   <  SRR4302533.357295/94‑1 (MQ=60)

                                                                                            GCGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCG   <  SRR4302533.2440915/94‑1 (MQ=60)

                                                                                             CGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  SRR4302533.3882065/1‑94 (MQ=60)

CAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGT  >  NC_000913/1061508‑1061694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`