Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,067,441	(A)_6→5	coding (138/174 nt)	b4516 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,067,436	0	A	.	100.0%	901.3 / NA	194	coding (133/174 nt)	b4516	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (88/106); total (88/106)

Only 100 of 215 total aligned reads displayed.

CCGCGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAA  >  NC_000913/1067345‑1067523

ccGCGAAAGAGCATCAGAAGCAGATAAAAAAGGTGGACAGCACAGCTGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaa                                                                                        >  2:5071473/1‑93 (MQ=255)

  gcgAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaa                                                                                      >  1:4657709/1‑93 (MQ=255)

   cgAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaa                                                                                     >  2:5356099/1‑93 (MQ=255)

    gAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaag                                                                                    <  2:4450946/93‑2 (MQ=255)

    gAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaag                                                                                    <  2:705605/93‑2 (MQ=255)

    gAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaag                                                                                    >  1:77542/1‑92 (MQ=255)

     aaaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaagg                                                                                   >  1:3147631/1‑91 (MQ=255)

     aaaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaagg                                                                                   >  2:2459120/1‑91 (MQ=255)

     aaaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGAACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaagg                                                                                   >  2:522580/1‑91 (MQ=255)

      aaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaaggt                                                                                  >  2:3965381/1‑90 (MQ=255)

      aaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaaggt                                                                                  >  1:118013/1‑90 (MQ=255)

      aaGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGCAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaagga                                                                                  >  1:2489396/1‑90 (MQ=255)

       agagCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTaaaaaggtg                                                                                 >  2:1124156/1‑89 (MQ=255)

         agCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAggtggt                                                                              <  2:2759910/93‑1 (MQ=255)

         agCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAggtgga                                                                              >  1:3335653/1‑92 (MQ=255)

            aTCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAag                                                                           >  1:2866539/1‑93 (MQ=255)

             tCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAaga                                                                          >  2:3499124/1‑93 (MQ=255)

             tCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAaga                                                                          >  1:138145/1‑93 (MQ=255)

             tCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAaga                                                                          >  1:5608830/1‑93 (MQ=255)

             acAGAAGCAGGTAAAAAAGGTAGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGTTGGTAaga                                                                          <  2:3067628/92‑1 (MQ=255)

               aGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGc                                                                        <  1:4171568/93‑1 (MQ=255)

               aGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGc                                                                        >  2:4041725/1‑93 (MQ=255)

               aGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGc                                                                        <  2:3407497/93‑1 (MQ=255)

                gAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCa                                                                       >  1:5482310/1‑93 (MQ=255)

                  aGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCTGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGt                                                                     <  1:3379111/93‑1 (MQ=255)

                  aGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGt                                                                     >  2:4850872/1‑93 (MQ=255)

                   gCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTc                                                                    <  2:6061290/93‑1 (MQ=255)

                     aGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCAc                                                                  >  2:2152086/1‑93 (MQ=255)

                     aGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCAc                                                                  <  1:1033672/93‑1 (MQ=255)

                     aGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGGAAGAGCAGTCAc                                                                  >  2:4546599/1‑93 (MQ=255)

                             aaGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAg                                                          <  2:2888847/93‑1 (MQ=255)

                             aaGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAg                                                          <  1:1687357/93‑1 (MQ=255)

                             aaGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAg                                                          >  2:4136438/1‑93 (MQ=255)

                              aGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGc                                                         <  2:1509367/93‑1 (MQ=255)

                              aGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGc                                                         <  2:6004475/93‑1 (MQ=255)

                                gTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGa                                                       >  1:2078809/1‑93 (MQ=255)

                                gTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGa                                                       <  1:3592615/93‑1 (MQ=255)

                                 tGGACAGCACAGCGGGGGTAATTTCAAGAATGCCCCGGAGCGAGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGAc                                                      <  1:3770424/93‑1 (MQ=255)

                                  ggACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACa                                                     >  1:4691547/1‑93 (MQ=255)

                                   gACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACaa                                                    >  2:1564394/1‑93 (MQ=255)

                                   gACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACaa                                                    >  2:1992806/1‑93 (MQ=255)

                                    acagcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAAc                                                   <  2:4158452/93‑1 (MQ=255)

                                    acagcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAAc                                                   <  2:2045173/93‑1 (MQ=255)

                                     cagcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACt                                                  >  2:1764665/1‑93 (MQ=255)

                                      agcacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTa                                                 <  2:2136973/93‑1 (MQ=255)

                                        cacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGc                                               <  2:5122302/93‑1 (MQ=255)

                                        cacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGc                                               <  1:392809/93‑1 (MQ=255)

                                        cacagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCGGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCAGGGCAAAAGCGACAACTAGc                                               <  1:1984578/93‑1 (MQ=255)

                                         acagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGcc                                              >  1:5022905/1‑93 (MQ=255)

                                          cagcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCg                                             <  1:2985834/93‑1 (MQ=255)

                                           agcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCgg                                            >  1:5667132/1‑93 (MQ=255)

                                           agcGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCgg                                            <  1:1429593/93‑1 (MQ=255)

                                             cGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGc                                          <  1:319521/93‑1 (MQ=255)

                                               ggggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTa                                        >  1:1291010/1‑93 (MQ=255)

                                               ggggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTa                                        <  1:2753972/93‑1 (MQ=255)

                                                gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTaa                                       <  1:893273/93‑1 (MQ=255)

                                                gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTaa                                       <  2:5831642/93‑1 (MQ=255)

                                                gggTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTaa                                       <  2:4356665/93‑1 (MQ=255)

                                                  gTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGTTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATc                                     <  2:1855447/93‑1 (MQ=255)

                                                    aaTTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCaa                                   >  1:1361041/1‑93 (MQ=255)

                                                      tttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATg                                 <  2:1258201/93‑1 (MQ=255)

                                                      tttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATg                                 <  2:807008/93‑1 (MQ=255)

                                                       ttCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGa                                <  2:3016993/93‑1 (MQ=255)

                                                        tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGAc                               <  1:5220426/93‑1 (MQ=255)

                                                        tCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGGGGTAAGAGCAGTCACGGCAAAAGAGACAACTAGCCGGGCTAATCAATGAc                               >  1:5331180/1‑93 (MQ=255)

                                                          aaGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGa                             <  1:829853/93‑1 (MQ=255)

                                                          aaGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGa                             >  1:4923548/1‑93 (MQ=255)

                                                           aGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGaa                            <  1:1892029/93‑1 (MQ=255)

                                                           aGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGaa                            <  2:2590228/93‑1 (MQ=255)

                                                             aaTGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATg                          <  1:2548497/93‑1 (MQ=255)

                                                             aaTGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGCCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATg                          <  1:3957103/93‑1 (MQ=255)

                                                               tGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCa                        >  1:80601/1‑93 (MQ=255)

                                                                 aCCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAtt                      <  2:824713/93‑1 (MQ=255)

                                                                  cccGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAttt                     <  1:2376818/93‑1 (MQ=255)

                                                                  cccGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAttt                     <  1:2631561/93‑1 (MQ=255)

                                                                   ccGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAtttt                    <  2:1889505/93‑1 (MQ=255)

                                                                   ccGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAtttt                    >  2:1793092/1‑93 (MQ=255)

                                                                   ccGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAtttt                    >  1:6028596/1‑93 (MQ=255)

                                                                    cGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAttttt                   <  1:3505051/93‑1 (MQ=255)

                                                                      cAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGt                 <  2:3773889/93‑1 (MQ=255)

                                                                       aGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTc                <  1:6301891/93‑1 (MQ=255)

                                                                       aGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTc                <  2:6249474/93‑1 (MQ=255)

                                                                       aGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTc                >  2:5508463/1‑93 (MQ=255)

                                                                        gcgcgcATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCt               >  1:1126473/1‑93 (MQ=255)

                                                                          gcgcATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGt             <  1:6265019/93‑1 (MQ=255)

                                                                          gcgcATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGt             >  2:5639285/1‑93 (MQ=255)

                                                                            gcATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAg           <  2:3562307/93‑1 (MQ=255)

                                                                             cATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGc          >  2:2304924/1‑93 (MQ=255)

                                                                             cATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGc          <  1:1740060/93‑1 (MQ=255)

                                                                               tCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTc        >  1:2920177/1‑93 (MQ=255)

                                                                               tCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTc        >  1:4271067/1‑93 (MQ=255)

                                                                                 tGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGt      <  2:4988387/93‑1 (MQ=255)

                                                                                 tGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGt      >  1:558621/1‑93 (MQ=255)

                                                                                 tGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGt      >  2:3252477/1‑93 (MQ=255)

                                                                                  gAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTc     >  2:6171123/1‑93 (MQ=255)

                                                                                  gAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTc     >  1:5804117/1‑93 (MQ=255)

                                                                                  gAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTc     >  1:6166442/1‑93 (MQ=255)

                                                                                   aaGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCa    >  1:151821/1‑93 (MQ=255)

                                                                                    aGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCaa   >  1:4554489/1‑93 (MQ=255)

                                                                                     gCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCaaa  >  1:1778136/1‑93 (MQ=255)

CCGCGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAA  >  NC_000913/1067345‑1067523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAC  >  NC_000913/1067348‑1067533

CGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAG                                                                                              >  SRR4302533.372961/1‑94 (MQ=60)

CGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAG                                                                                              >  SRR4302533.78041/1‑94 (MQ=60)

 GAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAGG                                                                                             >  SRR4302533.16895/1‑94 (MQ=60)

 GAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAGG                                                                                             >  SRR4302533.5282864/1‑94 (MQ=60)

 GAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAGG                                                                                             >  SRR4302533.3166984/1‑94 (MQ=60)

  AAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGT                                                                                           >  SRR4302533.118762/1‑94 (MQ=60)

    AGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGG                                                                                         <  SRR4302533.290866/94‑1 (MQ=60)

      AGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTA                                                                                       <  SRR4302533.4027483/94‑1 (MQ=60)

        CATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAG                                                                                     <  SRR4302533.2392151/94‑1 (MQ=60)

        CATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAG                                                                                     >  SRR4302533.2884175/1‑94 (MQ=60)

         ATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGA                                                                                    >  SRR4302533.139022/1‑94 (MQ=60)

         ATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGA                                                                                    >  SRR4302533.5642726/1‑94 (MQ=60)

          TCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAGGCAGGT‑AAAAAGGTGGTAAGAG                                                                                   <  SRR4302533.3954459/94‑1 (MQ=60)

          TCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAG                                                                                   <  SRR4302533.1878101/94‑1 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 >  SRR4302533.5515360/1‑94 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 <  SRR4302533.4717010/94‑1 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 <  SRR4302533.4196847/94‑1 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 >  SRR4302533.3494224/1‑94 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 <  SRR4302533.781180/94‑1 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 <  SRR4302533.641809/94‑1 (MQ=60)

            AGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCA                                                                                 >  SRR4302533.1427052/1‑94 (MQ=60)

             GAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAG                                                                                <  SRR4302533.4895907/94‑1 (MQ=60)

             GAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAG                                                                                <  SRR4302533.355615/94‑1 (MQ=60)

              AAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCACGT‑AAAAAGGTGGTAAGAGCAGT                                                                               >  SRR4302533.6148458/1‑94 (MQ=60)

               AGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCTGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTC                                                                              <  SRR4302533.3399971/94‑1 (MQ=60)

                GCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCA                                                                             >  SRR4302533.1961868/1‑94 (MQ=60)

                  AGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACG                                                                           >  SRR4302533.2782633/1‑94 (MQ=60)

                  AGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACG                                                                           <  SRR4302533.1039753/94‑1 (MQ=60)

                  AGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACG                                                                           >  SRR4302533.2168918/1‑94 (MQ=60)

                     TAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCA                                                                        <  SRR4302533.829183/94‑1 (MQ=60)

                     TAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCA                                                                        >  SRR4302533.1466932/1‑94 (MQ=60)

                         AAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAG                                                                    <  SRR4302533.4614621/94‑1 (MQ=60)

                          AAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGC                                                                   <  SRR4302533.1697583/94‑1 (MQ=60)

                          AAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGC                                                                   >  SRR4302533.5831666/1‑94 (MQ=60)

                          AAGGCGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGCAAGAGCAGTCACGGCAAAAGC                                                                   >  SRR4302533.4518328/1‑94 (MQ=60)

                            GGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGA                                                                 >  SRR4302533.2091601/1‑94 (MQ=60)

                             GTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGAC                                                                <  SRR4302533.3614726/94‑1 (MQ=60)

                              TGGACAGCACAGCGGGGGTAATTTCAAGAATGCCCCGGAGCGAGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACA                                                               <  SRR4302533.3793540/94‑1 (MQ=60)

                              TGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACA                                                               >  SRR4302533.5023337/1‑94 (MQ=60)

                              TGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACA                                                               >  SRR4302533.4719984/1‑94 (MQ=60)

                               GGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAA                                                              >  SRR4302533.1743395/1‑94 (MQ=60)

                                 ACAGCACAGCGGGGGTGATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACT                                                            >  SRR4302533.2899032/1‑94 (MQ=60)

                                 ACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACT                                                            <  SRR4302533.2938334/94‑1 (MQ=60)

                                    GCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGC                                                         <  SRR4302533.1376223/94‑1 (MQ=60)

                                     CACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCC                                                        >  SRR4302533.5053324/1‑94 (MQ=60)

                                     CACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCC                                                        <  SRR4302533.395192/94‑1 (MQ=60)

                                     CACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCGGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCAGGGCAAAAGCGACAACTAGCC                                                        <  SRR4302533.1996719/94‑1 (MQ=60)

                                       CAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGG                                                      <  SRR4302533.1067015/94‑1 (MQ=60)

                                       CAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGG                                                      <  SRR4302533.3004103/94‑1 (MQ=60)

                                       CAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGG                                                      >  SRR4302533.5701364/1‑94 (MQ=60)

                                       CAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGG                                                      >  SRR4302533.1316959/1‑94 (MQ=60)

                                        AGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGG                                                     <  SRR4302533.2261638/94‑1 (MQ=60)

                                        AGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGG                                                     <  SRR4302533.3219186/94‑1 (MQ=60)

                                        AGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGG                                                     <  SRR4302533.1438235/94‑1 (MQ=60)

                                         GCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGC                                                    <  SRR4302533.4252819/94‑1 (MQ=60)

                                         GCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGC                                                    <  SRR4302533.585529/94‑1 (MQ=60)

                                          CGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCT                                                   <  SRR4302533.321478/94‑1 (MQ=60)

                                          CGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCT                                                   >  SRR4302533.5059577/1‑94 (MQ=60)

                                          CGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCT                                                   >  SRR4302533.5677987/1‑94 (MQ=60)

                                           GGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTA                                                  >  SRR4302533.1298787/1‑94 (MQ=60)

                                            GGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAA                                                 <  SRR4302533.2770861/94‑1 (MQ=60)

                                             GGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAAT                                                >  SRR4302533.4611152/1‑94 (MQ=60)

                                             GGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAAT                                                <  SRR4302533.898521/94‑1 (MQ=60)

                                                TAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAA                                             <  SRR4302533.3561456/94‑1 (MQ=60)

                                                TAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAA                                             >  SRR4302533.1369217/1‑94 (MQ=60)

                                                 AATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAAT                                            >  SRR4302533.2016639/1‑94 (MQ=60)

                                                  ATTTCAAGAATCACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATG                                           <  SRR4302533.1464090/94‑1 (MQ=60)

                                                    TTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGGGGTAAGAGCAGTCACGGCAAAAGAGACAACTAGCCGGGCTAATCAATGAC                                         >  SRR4302533.5363135/1‑94 (MQ=60)

                                                     TCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG                                        <  SRR4302533.5251844/94‑1 (MQ=60)

                                                     TCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACG                                        >  SRR4302533.2647298/1‑94 (MQ=60)

                                                      CAAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGA                                       >  SRR4302533.4953376/1‑94 (MQ=60)

                                                       AAGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAA                                      <  SRR4302533.834719/94‑1 (MQ=60)

                                                        AGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAAT                                     <  SRR4302533.1903576/94‑1 (MQ=60)

                                                        AGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAAT                                     <  SRR4302533.6282311/94‑1 (MQ=60)

                                                        AGAATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAAT                                     <  SRR4302533.2541089/94‑1 (MQ=60)

                                                          AATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGC                                   >  SRR4302533.945859/1‑94 (MQ=60)

                                                          AATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGC                                   <  SRR4302533.2564183/94‑1 (MQ=60)

                                                          AATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGC                                   >  SRR4302533.3367287/1‑94 (MQ=60)

                                                          AATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGCCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGC                                   <  SRR4302533.3981222/94‑1 (MQ=60)

                                                           ATGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCA                                  >  SRR4302533.81115/1‑94 (MQ=60)

                                                            TGACCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCAT                                 <  SRR4302533.6310026/94‑1 (MQ=60)

                                                               CCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTT                              <  SRR4302533.2647733/94‑1 (MQ=60)

                                                               CCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTT                              >  SRR4302533.6065134/1‑94 (MQ=60)

                                                               CCCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTT                              <  SRR4302533.2391524/94‑1 (MQ=60)

                                                                CCGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTT                             <  SRR4302533.5629366/94‑1 (MQ=60)

                                                                 CGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTG                            <  SRR4302533.3526659/94‑1 (MQ=60)

                                                                 CGCAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTG                            >  SRR4302533.6246247/1‑94 (MQ=60)

                                                                   CAGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTC                          >  SRR4302533.5380930/1‑94 (MQ=60)

                                                                    AGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCT                         >  SRR4302533.1133164/1‑94 (MQ=60)

                                                                    AGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCT                         >  SRR4302533.1185004/1‑94 (MQ=60)

                                                                    AGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCT                         <  SRR4302533.6339536/94‑1 (MQ=60)

                                                                    AGCGCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCT                         >  SRR4302533.385960/1‑94 (MQ=60)

                                                                       GCGCATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTA                      <  SRR4302533.6302461/94‑1 (MQ=60)

                                                                          CATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCT                   >  SRR4302533.558500/1‑94 (MQ=60)

                                                                          CATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCT                   <  SRR4302533.1750611/94‑1 (MQ=60)

                                                                           ATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTC                  >  SRR4302533.2938068/1‑94 (MQ=60)

                                                                           ATCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTC                  >  SRR4302533.4296774/1‑94 (MQ=60)

                                                                            TCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCG                 <  SRR4302533.5471253/94‑1 (MQ=60)

                                                                            TCTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCG                 <  SRR4302533.2664845/94‑1 (MQ=60)

                                                                             CTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGT                >  SRR4302533.561940/1‑94 (MQ=60)

                                                                             CTGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGT                >  SRR4302533.3195491/1‑94 (MQ=60)

                                                                              TGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTC               >  SRR4302533.5839171/1‑94 (MQ=60)

                                                                              TGAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTC               >  SRR4302533.6203503/1‑94 (MQ=60)

                                                                               GAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCA              >  SRR4302533.893140/1‑94 (MQ=60)

                                                                               GAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCA              >  SRR4302533.152792/1‑94 (MQ=60)

                                                                               GAAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCA              <  SRR4302533.1244431/94‑1 (MQ=60)

                                                                                AAGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAA             >  SRR4302533.4582110/1‑94 (MQ=60)

                                                                                 AGCAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAA            >  SRR4302533.1788963/1‑94 (MQ=60)

                                                                                   CAGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAA          >  SRR4302533.1621198/1‑94 (MQ=60)

                                                                                    AGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAG         >  SRR4302533.678551/1‑94 (MQ=60)

                                                                                    AGGT‑AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAG         >  SRR4302533.1597830/1‑94 (MQ=60)

                                                                                       gtAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCC       <  SRR4302533.4501709/92‑1 (MQ=60)

                                                                                       gtAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCC       <  SRR4302533.2474293/92‑1 (MQ=60)

                                                                                         AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCAT     >  SRR4302533.152940/1‑94 (MQ=60)

                                                                                         AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCAT     <  SRR4302533.10739/94‑1 (MQ=60)

                                                                                         AAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCAT     <  SRR4302533.3727775/94‑1 (MQ=60)

                                                                                          AAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATC    <  SRR4302533.2821551/94‑1 (MQ=60)

                                                                                           AAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAGCTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCA   <  SRR4302533.379169/94‑1 (MQ=60)

                                                                                           AAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCA   <  SRR4302533.3141967/94‑1 (MQ=60)

                                                                                           AAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCA   >  SRR4302533.942219/1‑94 (MQ=60)

                                                                                            AAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAC  <  SRR4302533.5713840/94‑1 (MQ=60)

CGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAGCCGGGCTAATCAATGACGAATGCATTTTTGTCTGTAGCTCGTCAAAAAGCCATCAC  >  NC_000913/1067348‑1067533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`