Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,119,088	T→C	E241G (GAA→GGA)	solA ←	sarcosine oxidase‑like protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,119,088	0	T	C	99.5%	596.6 / NA	188	E241G (GAA→GGA)	solA	sarcosine oxidase‑like protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (89/98); minor base A (1/0); total (90/98)
Fisher's exact test for biased strand distribution p-value = 4.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 191 total aligned reads displayed.

GAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTTCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGC  >  NC_000913/1118998‑1119177

gAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCa                                                                                         >  2:3052804/1‑93 (MQ=255)

  aTGGATAACCGGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCAcc                                                                                       <  2:332437/93‑1 (MQ=255)

     gATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGt                                                                                    >  1:3681582/1‑93 (MQ=255)

     gATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGt                                                                                    >  1:5640665/1‑93 (MQ=255)

          ccTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACg                                                                               >  1:3449122/1‑93 (MQ=255)

          ccTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACg                                                                               <  2:1227563/93‑1 (MQ=255)

           cTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGc                                                                              >  1:455405/1‑93 (MQ=255)

            tGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGcc                                                                             >  2:2563724/1‑93 (MQ=255)

             ggCCTCCGTTATGTTTGCCGATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCg                                                                            <  2:4419225/93‑1 (MQ=255)

             ggCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCg                                                                            <  1:3098836/93‑1 (MQ=255)

             ggCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCg                                                                            <  1:4776166/93‑1 (MQ=255)

               ccTCCGTTATGTTTGCCAATCGTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCggg                                                                          <  2:2942155/93‑1 (MQ=255)

                cTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGa                                                                         >  1:4633687/1‑93 (MQ=255)

                 tCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGaa                                                                        <  2:4948961/93‑1 (MQ=255)

                 tCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGaa                                                                        >  1:3281218/1‑93 (MQ=255)

                 tCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGaa                                                                        <  2:4174179/93‑1 (MQ=255)

                  ccGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAAt                                                                       >  1:833448/1‑93 (MQ=255)

                   cGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAAtt                                                                      >  2:1117450/1‑93 (MQ=255)

                     ttATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTa                                                                    <  1:5185771/93‑1 (MQ=255)

                     ttATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTa                                                                    >  2:2370131/1‑93 (MQ=255)

                     ttATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTa                                                                    <  2:387087/93‑1 (MQ=255)

                      tATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAt                                                                   >  2:788139/1‑93 (MQ=255)

                       aTGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAtt                                                                  >  2:4454031/1‑93 (MQ=255)

                       aTGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAtt                                                                  <  2:1596655/93‑1 (MQ=255)

                       aTGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTAATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAtt                                                                  <  1:4438884/93‑1 (MQ=255)

                           ttGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAttcttc                                                              <  2:2994012/93‑1 (MQ=255)

                             gCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCCCCGGTAAACGCCGGGCATTTATTCTTCAc                                                            >  1:1832303/1‑93 (MQ=255)

                               cactCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGc                                                          <  2:219675/90‑1 (MQ=255)

                               cAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGc                                                          <  2:4287713/93‑1 (MQ=255)

                                aaTCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCt                                                         <  1:3413612/93‑1 (MQ=255)

                                  tCTTCAACGCGTGTTTTTCTGACGGAAAAACCTAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtat                                                       <  2:5924237/93‑1 (MQ=255)

                                  tCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtat                                                       <  2:3114287/93‑1 (MQ=255)

                                  tCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtat                                                       >  1:2353749/1‑93 (MQ=255)

                                  tCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtat                                                       >  2:5894357/1‑93 (MQ=255)

                                  tCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtat                                                       <  1:4040404/93‑1 (MQ=255)

                                   cTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCtata                                                      <  2:679729/93‑1 (MQ=255)

                                     tCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGc                                                    >  1:2579634/1‑93 (MQ=255)

                                     tCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGc                                                    >  2:1335831/1‑93 (MQ=255)

                                     tCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGc                                                    <  1:198284/93‑1 (MQ=255)

                                     tCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGc                                                    >  1:1728887/1‑93 (MQ=255)

                                       aaCGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCgg                                                  <  1:2461962/93‑1 (MQ=255)

                                       aaCGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCgg                                                  >  2:1725203/1‑93 (MQ=255)

                                        aCGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGc                                                 <  1:746451/93‑1 (MQ=255)

                                         cgcgTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGcc                                                >  2:1633973/1‑93 (MQ=255)

                                         cgcgTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGcc                                                >  2:1954682/1‑93 (MQ=255)

                                          gcgTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCa                                               <  1:5342387/93‑1 (MQ=255)

                                           cgtcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAt                                              >  1:5563772/1‑93 (MQ=255)

                                           cgtcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAt                                              <  2:6287309/93‑1 (MQ=255)

                                           cgtcgtGTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAt                                              <  1:4880432/93‑1 (MQ=255)

                                            gtcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATc                                             >  1:1400721/1‑93 (MQ=255)

                                            gtcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGCAAACGCCGGGAATTTATTCTTCGCGCTATAGCGGCCATc                                             >  2:5337049/1‑93 (MQ=255)

                                             tcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAtag                                            >  1:6241013/1‑91 (MQ=255)

                                             tcgtTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCg                                            <  1:1772409/93‑1 (MQ=255)

                                                ttttCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGcc                                         <  2:205005/93‑1 (MQ=255)

                                                ttttCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGcc                                         <  2:1501924/93‑1 (MQ=255)

                                                  ttCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTg                                       <  2:1557208/93‑1 (MQ=255)

                                                     tGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATa                                    >  1:1196545/1‑93 (MQ=255)

                                                       ccGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATAca                                  >  1:4677300/1‑92 (MQ=255)

                                                        cGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCAGCCTGATACCa                                 >  2:3730966/1‑93 (MQ=255)

                                                        cGGAAAACCATAATATTGATCGCCATTGGGCAGTATACCGGTAAACGCCGGGAACTTATTCTTCACGCTATAGCGGCCATCCGCCTGATACCa                                 >  1:759151/1‑93 (MQ=255)

                                                          gAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAgg                               <  1:2312069/93‑1 (MQ=255)

                                                              aCCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCaaa                           <  2:3702265/93‑1 (MQ=255)

                                                              aCCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCaaa                           >  1:3729290/1‑93 (MQ=255)

                                                               ccATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAAt                          <  2:6042534/93‑1 (MQ=255)

                                                                cATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATa                         <  2:1488774/93‑1 (MQ=255)

                                                                cATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATa                         <  2:1296388/93‑1 (MQ=255)

                                                                 ataataTTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATAc                        >  1:6051319/1‑93 (MQ=255)

                                                                  taataTTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACt                       <  1:2695456/93‑1 (MQ=255)

                                                                     tatTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTg                    <  2:1887197/93‑1 (MQ=255)

                                                                     tatTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTg                    >  1:3950617/1‑93 (MQ=255)

                                                                      atTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGc                   >  2:1828383/1‑93 (MQ=255)

                                                                      atTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGc                   <  1:3403674/93‑1 (MQ=255)

                                                                      atTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGc                   <  1:6013173/93‑1 (MQ=255)

                                                                      atTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGc                   >  1:6221552/1‑93 (MQ=255)

                                                                      atTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGc                   <  1:2055848/93‑1 (MQ=255)

                                                                       ttGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCg                  <  2:3807010/93‑1 (MQ=255)

                                                                        tGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGt                 <  1:6049823/93‑1 (MQ=255)

                                                                         gATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTa                <  2:2724350/93‑1 (MQ=255)

                                                                         gATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTa                <  2:2359411/93‑1 (MQ=255)

                                                                          aTCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGGCTGATACCAGGCAAATACTTTGCGTAc               >  1:46110/1‑93 (MQ=255)

                                                                          aTCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTAc               <  1:1650426/93‑1 (MQ=255)

                                                                           tCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACg              <  1:124521/93‑1 (MQ=255)

                                                                           tCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACg              <  1:5127701/93‑1 (MQ=255)

                                                                           acGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCGGGCAAATACTCTGCGTACg              <  2:6105756/92‑1 (MQ=255)

                                                                             gCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACggg            <  2:4295351/93‑1 (MQ=255)

                                                                             gCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACggg            >  1:3780975/1‑93 (MQ=255)

                                                                               cATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCt          >  2:2884837/1‑93 (MQ=255)

                                                                               cATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCt          <  2:2668264/93‑1 (MQ=255)

                                                                               cATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCt          >  2:2813730/1‑93 (MQ=255)

                                                                               cATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCt          >  1:4301041/1‑93 (MQ=255)

                                                                                aTTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTg         >  1:4812537/1‑93 (MQ=255)

                                                                                aTTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTg         >  1:2270742/1‑93 (MQ=255)

                                                                                  tGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGa       >  1:5472843/1‑93 (MQ=255)

                                                                                  tGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGa       <  2:5694967/93‑1 (MQ=255)

                                                                                   gggCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGAc      >  1:155421/1‑93 (MQ=255)

                                                                                   gggCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGAc      <  1:5670108/93‑1 (MQ=255)

                                                                                     gCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAg    <  1:1307447/93‑1 (MQ=255)

                                                                                     gCAGTCCACCGGTAAACGACAGAAATTTATTCTTCACGCTATAGCGGCCAGCGGCCTGATACCAGGCAAATACTTTGCGTCCGGGCTGGACAg    <  2:2434790/93‑1 (MQ=255)

                                                                                      cAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAgg   <  2:2311339/93‑1 (MQ=255)

                                                                                       aGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGc  <  2:3055559/93‑1 (MQ=255)

GAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTTCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGC  >  NC_000913/1118998‑1119177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTTCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCAGC  >  NC_000913/1118995‑1119180

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTC                                                                                              >  SRR4302533.3048506/1‑94 (MQ=60)

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTC                                                                                              >  SRR4302533.859830/1‑94 (MQ=60)

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTC                                                                                              <  SRR4302533.3589341/94‑1 (MQ=60)

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGAGCAGTC                                                                                              >  SRR4302533.3678324/1‑94 (MQ=60)

 CTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCC                                                                                             >  SRR4302533.6297798/1‑94 (MQ=60)

  TGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCA                                                                                            >  SRR4302533.4629652/1‑94 (MQ=60)

  TGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCA                                                                                            <  SRR4302533.2604335/94‑1 (MQ=60)

  TGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTCCACCGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCA                                                                                            <  SRR4302533.4839342/94‑1 (MQ=60)

   GAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCAC                                                                                           >  SRR4302533.4514095/1‑94 (MQ=60)

    AATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACC                                                                                          >  SRR4302533.3698091/1‑94 (MQ=60)

    AATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACC                                                                                          <  SRR4302533.761977/94‑1 (MQ=60)

     ATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCG                                                                                         >  SRR4302533.1700575/1‑94 (MQ=60)

       GGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGT                                                                                       >  SRR4302533.3704205/1‑94 (MQ=60)

       GGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGT                                                                                       >  SRR4302533.5674761/1‑94 (MQ=60)

       GGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATCGGGCAGTCCACCGGT                                                                                       <  SRR4302533.4680610/94‑1 (MQ=60)

            ACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACG                                                                                  >  SRR4302533.3470416/1‑94 (MQ=60)

             CCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGC                                                                                 >  SRR4302533.458128/1‑94 (MQ=60)

              CTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCC                                                                                <  SRR4302533.3118060/94‑1 (MQ=60)

                GGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGG                                                                              <  SRR4302533.3117887/94‑1 (MQ=60)

                GGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGG                                                                              <  SRR4302533.4805101/94‑1 (MQ=60)

                  CCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGA                                                                            >  SRR4302533.5702786/1‑94 (MQ=60)

                  CCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGA                                                                            >  SRR4302533.4661765/1‑94 (MQ=60)

                   CTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAA                                                                           >  SRR4302533.3301474/1‑94 (MQ=60)

                    TCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAAT                                                                          >  SRR4302533.838331/1‑94 (MQ=60)

                      CGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTT                                                                        <  SRR4302533.5089997/94‑1 (MQ=60)

                       GTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTA                                                                       >  SRR4302533.5176347/1‑94 (MQ=60)

                        TTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAT                                                                      <  SRR4302533.5217072/94‑1 (MQ=60)

                        TTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTAT                                                                      >  SRR4302533.6270156/1‑94 (MQ=60)

                          ATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTC                                                                    >  SRR4302533.5631757/1‑94 (MQ=60)

                          ATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTAATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTC                                                                    <  SRR4302533.4465715/94‑1 (MQ=60)

                           TGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCT                                                                   >  SRR4302533.2208768/1‑94 (MQ=60)

                            GTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTT                                                                  <  SRR4302533.1315520/94‑1 (MQ=60)

                               TGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCCCCGGTAAACGCCGGGCATTTATTCTTCAC                                                               >  SRR4302533.1843488/1‑94 (MQ=60)

                                GCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACG                                                              >  SRR4302533.642278/1‑94 (MQ=60)

                                GCCAATCTTCAACGCGTCGTTATCTGCCGTAAAACCATAAGATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACG                                                              <  SRR4302533.3070617/94‑1 (MQ=60)

                                   AATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTA                                                           <  SRR4302533.4891536/94‑1 (MQ=60)

                                   AATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTA                                                           <  SRR4302533.3434702/94‑1 (MQ=60)

                                    ATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTAT                                                          >  SRR4302533.2368304/1‑94 (MQ=60)

                                     TCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATA                                                         <  SRR4302533.258264/94‑1 (MQ=60)

                                     TCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATA                                                         <  SRR4302533.4064995/94‑1 (MQ=60)

                                       TTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGC                                                       >  SRR4302533.2595508/1‑94 (MQ=60)

                                       TTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGC                                                       >  SRR4302533.1739372/1‑94 (MQ=60)

                                        TCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCG                                                      <  SRR4302533.199536/94‑1 (MQ=60)

                                         CAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGG                                                     >  SRR4302533.6214228/1‑94 (MQ=60)

                                         CAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGG                                                     >  SRR4302533.548481/1‑94 (MQ=60)

                                         CAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGGAAACGCCGGGAATTTATTGTTCACGCTATAGCGG                                                     >  SRR4302533.3433566/1‑94 (MQ=60)

                                          AACGTGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGC                                                    <  SRR4302533.4235577/94‑1 (MQ=60)

                                          AACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGC                                                    <  SRR4302533.2477151/94‑1 (MQ=60)

                                           ACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCC                                                   >  SRR4302533.845673/1‑94 (MQ=60)

                                           ACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCC                                                   <  SRR4302533.750844/94‑1 (MQ=60)

                                            CGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCA                                                  >  SRR4302533.4052252/1‑94 (MQ=60)

                                            CGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCA                                                  >  SRR4302533.3797858/1‑94 (MQ=60)

                                            CGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCA                                                  >  SRR4302533.1984190/1‑94 (MQ=60)

                                             GCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAT                                                 <  SRR4302533.5374425/94‑1 (MQ=60)

                                             GCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCAT                                                 >  SRR4302533.5597402/1‑94 (MQ=60)

                                              CGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATC                                                >  SRR4302533.1409164/1‑94 (MQ=60)

                                              CGTCGTGTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATC                                                <  SRR4302533.4909998/94‑1 (MQ=60)

                                               GTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATAG                                               >  SRR4302533.6278380/1‑94 (MQ=60)

                                                TCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGG                                              <  SRR4302533.1783201/94‑1 (MQ=60)

                                                  GTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCC                                            <  SRR4302533.179052/94‑1 (MQ=60)

                                                   TTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCT                                           <  SRR4302533.4659369/94‑1 (MQ=60)

                                                      TCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGAT                                        <  SRR4302533.2384791/94‑1 (MQ=60)

                                                       CTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCTGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATA                                       >  SRR4302533.3400119/1‑94 (MQ=60)

                                                       CTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATA                                       >  SRR4302533.1203734/1‑94 (MQ=60)

                                                         GCCGGAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACA                                     >  SRR4302533.4705646/1‑94 (MQ=60)

                                                          CCGGAAAACCATAATATTGATCGCCATTGGGCAGTATACCGGTAAACGCCGGGAACTTATTCTTCACGCTATAGCGGCCATCCGCCTGATACCA                                    >  SRR4302533.763619/1‑94 (MQ=60)

                                                             GAAAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGC                                 <  SRR4302533.2326392/94‑1 (MQ=60)

                                                              AAAACCATAATATTGATCGCCATTGGGCAGTCCACAGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGTCATCGGCCTGATATCAGGCA                                >  SRR4302533.1661802/1‑94 (MQ=60)

                                                               AAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGGCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAA                               >  SRR4302533.4461653/1‑94 (MQ=60)

                                                               AAACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAA                               >  SRR4302533.2334646/1‑94 (MQ=60)

                                                                AACCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAA                              >  SRR4302533.3752168/1‑94 (MQ=60)

                                                                  CCATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATA                            <  SRR4302533.6063603/94‑1 (MQ=60)

                                                                  CCATAATATTGACCGCCATTGGGCAGTCCGCCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATA                            <  SRR4302533.1997859/94‑1 (MQ=60)

                                                                   CATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATAC                           >  SRR4302533.6087975/1‑94 (MQ=60)

                                                                    ATAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACT                          <  SRR4302533.1256953/94‑1 (MQ=60)

                                                                     TAATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTT                         <  SRR4302533.2711974/94‑1 (MQ=60)

                                                                      AATATTGATGGCGTTTGGGCAGTCCACCGGTAAACGCCGGGAATGTAGTCTGCACGCGATAGCGGCCATCGGCCTGATACCAGGCAAATACTTT                        <  SRR4302533.1960936/94‑1 (MQ=60)

                                                                       ATATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTG                       >  SRR4302533.3974702/1‑94 (MQ=60)

                                                                        TATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGC                      >  SRR4302533.6258843/1‑94 (MQ=60)

                                                                         ATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCG                     <  SRR4302533.2068529/94‑1 (MQ=60)

                                                                         ATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCG                     <  SRR4302533.6049603/94‑1 (MQ=60)

                                                                         ATTGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCG                     <  SRR4302533.3424691/94‑1 (MQ=60)

                                                                           TGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTA                   <  SRR4302533.769104/94‑1 (MQ=60)

                                                                           TGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTA                   <  SRR4302533.6086473/94‑1 (MQ=60)

                                                                           TGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTA                   >  SRR4302533.5543506/1‑94 (MQ=60)

                                                                           TGATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTA                   <  SRR4302533.2620778/94‑1 (MQ=60)

                                                                            GATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGGCTGATACCAGGCAAATACTTTGCGTAC                  >  SRR4302533.46429/1‑94 (MQ=60)

                                                                             ATCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACG                 <  SRR4302533.1660425/94‑1 (MQ=60)

                                                                              TCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGG                <  SRR4302533.125302/94‑1 (MQ=60)

                                                                              TCGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGG                <  SRR4302533.5158679/94‑1 (MQ=60)

                                                                               CGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGG               <  SRR4302533.1578133/94‑1 (MQ=60)

                                                                               CGCCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGG               >  SRR4302533.3804135/1‑94 (MQ=60)

                                                                                 CCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCT             >  SRR4302533.1780385/1‑94 (MQ=60)

                                                                                 CCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCT             >  SRR4302533.4743260/1‑94 (MQ=60)

                                                                                 CCATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCT             >  SRR4302533.4326911/1‑94 (MQ=60)

                                                                                  CATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTG            >  SRR4302533.2284793/1‑94 (MQ=60)

                                                                                  CATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTG            >  SRR4302533.4841705/1‑94 (MQ=60)

                                                                                  CATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTG            >  SRR4302533.3452023/1‑94 (MQ=60)

                                                                                   ATTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGG           <  SRR4302533.3895152/94‑1 (MQ=60)

                                                                                    TTGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGA          >  SRR4302533.5505826/1‑94 (MQ=60)

                                                                                     TGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGAC         >  SRR4302533.156411/1‑94 (MQ=60)

                                                                                     TGGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGAC         >  SRR4302533.526034/1‑94 (MQ=60)

                                                                                      GGGCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACA        <  SRR4302533.5704355/94‑1 (MQ=60)

                                                                                        GCAGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGG      <  SRR4302533.1315299/94‑1 (MQ=60)

                                                                                          AGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCA    <  SRR4302533.1426680/94‑1 (MQ=60)

                                                                                          AGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCA    <  SRR4302533.5832727/94‑1 (MQ=60)

                                                                                          AGTCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCA    >  SRR4302533.5520868/1‑94 (MQ=60)

                                                                                            TCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCAGC  >  SRR4302533.217210/1‑94 (MQ=60)

                                                                                            TCCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCAGC  >  SRR4302533.863618/1‑94 (MQ=60)

GCTGAATGGATAACCTGGCCTCCGTTATGTTTGCCAATCTTCAACGCGTCGTTTTCTGCCGGAAAACCATAATATTGATCGCCATTGGGCAGTTCACCGGTAAACGCCGGGAATTTATTCTTCACGCTATAGCGGCCATCGGCCTGATACCAGGCAAATACTTTGCGTACGGGCTGGACAGGCAGC  >  NC_000913/1118995‑1119180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`