Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,138,203	A→G	Q201Q (CAA→CAG)	flgK →	hook‑filament junction protein 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,138,203	0	A	G	100.0%	798.0 / NA	243	Q201Q (CAA→CAG)	flgK	hook‑filament junction protein 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (111/132); total (111/132)

Only 100 of 253 total aligned reads displayed.

TACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAACGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAA  >  NC_000913/1138114‑1138292

tACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAgcgc                                                                                        >  2:5152164/1‑93 (MQ=255)

tACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAgcgc                                                                                        <  1:5047624/93‑1 (MQ=255)

tACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAgcgc                                                                                        <  1:4327550/93‑1 (MQ=255)

 aCGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGcgcg                                                                                       <  1:5510472/93‑1 (MQ=255)

  cGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGa                                                                                      >  2:5650147/1‑93 (MQ=255)

  cGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGa                                                                                      <  2:2211209/93‑1 (MQ=255)

   gCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGAt                                                                                     <  2:1453969/93‑1 (MQ=255)

   gCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGAt                                                                                     >  1:2840231/1‑93 (MQ=255)

   gCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGAt                                                                                     <  2:384251/93‑1 (MQ=255)

     tAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCa                                                                                   >  2:3119803/1‑93 (MQ=255)

       aaCAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAAc                                                                                 <  2:497772/93‑1 (MQ=255)

       aaCAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAAc                                                                                 >  1:414135/1‑93 (MQ=255)

        aCAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACt                                                                                <  2:895712/93‑1 (MQ=255)

        aCAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACt                                                                                <  1:5965487/93‑1 (MQ=255)

         cAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTg                                                                               <  1:6284346/93‑1 (MQ=255)

         cAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTg                                                                               <  1:3238208/93‑1 (MQ=255)

           aaTTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGt                                                                             >  1:670396/1‑93 (MQ=255)

           aaTTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGt                                                                             >  2:2110802/1‑93 (MQ=255)

            aTTGCCAGCCTGATAGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTg                                                                            <  1:3604881/93‑1 (MQ=255)

            aTTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTg                                                                            <  2:1139549/93‑1 (MQ=255)

             ttGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGa                                                                           <  2:3456454/93‑1 (MQ=255)

               gCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGc                                                                         <  2:4462722/93‑1 (MQ=255)

                 cAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGa                                                                       >  1:4257399/1‑93 (MQ=255)

                   gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAt                                                                     >  1:467850/1‑93 (MQ=255)

                   gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAt                                                                     >  1:3769141/1‑93 (MQ=255)

                   gCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAt                                                                     <  2:4407680/93‑1 (MQ=255)

                     cTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTa                                                                   >  1:1347962/1‑93 (MQ=255)

                      tGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTaa                                                                  <  2:3425868/93‑1 (MQ=255)

                      tGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTaa                                                                  >  1:2455338/1‑93 (MQ=255)

                      tGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTaa                                                                  <  1:1758659/93‑1 (MQ=255)

                        aaCGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAc                                                                >  1:5657694/1‑93 (MQ=255)

                         aCGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAcc                                                               >  2:168861/1‑93 (MQ=255)

                          cGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCa                                                              <  1:101512/93‑1 (MQ=255)

                          cGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCa                                                              <  2:3985156/93‑1 (MQ=255)

                            aTCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGa                                                            >  1:3928139/1‑93 (MQ=255)

                            aTCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGa                                                            >  2:364125/1‑93 (MQ=255)

                             tCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGAt                                                           >  1:4399458/1‑93 (MQ=255)

                               aaaTCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGAttg                                                         >  2:1160613/1‑93 (MQ=255)

                                aaTCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGAttgt                                                        <  2:4613484/93‑1 (MQ=255)

                                 aTCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAGCAGAttgtt                                                       >  1:4947457/1‑93 (MQ=255)

                                  tctcGCGCCGGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGAttgttg                                                      <  2:2600218/93‑1 (MQ=255)

                                   ctcGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTgg                                                     <  2:1346783/93‑1 (MQ=255)

                                    tcGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGgt                                                    <  1:5870486/93‑1 (MQ=255)

                                        gcCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAg                                                <  2:2003938/93‑1 (MQ=255)

                                        gcCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAg                                                >  1:4315659/1‑93 (MQ=255)

                                        gcCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAg                                                >  2:3851819/1‑93 (MQ=255)

                                         ccTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGa                                               <  1:1156696/93‑1 (MQ=255)

                                          cTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGaa                                              <  1:4427934/93‑1 (MQ=255)

                                           tGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAg                                             <  2:1874337/93‑1 (MQ=255)

                                           tGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAg                                             >  2:3280914/1‑93 (MQ=255)

                                           tGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAg                                             >  1:3273029/1‑93 (MQ=255)

                                           tGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAg                                             >  1:317318/1‑93 (MQ=255)

                                            gACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGt                                            >  1:4402620/1‑93 (MQ=255)

                                            gACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGt                                            <  1:55692/93‑1 (MQ=255)

                                              cAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCa                                          <  2:324473/93‑1 (MQ=255)

                                               aGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTTGTGTAGAAGTCAg                                         >  1:2645747/1‑93 (MQ=255)

                                                ggCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGc                                        >  1:292441/1‑93 (MQ=255)

                                                  cGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGt                                      <  1:1236250/93‑1 (MQ=255)

                                                    tGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTc                                    <  1:5292986/93‑1 (MQ=255)

                                                    tGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTc                                    >  2:1001862/1‑93 (MQ=255)

                                                      ggggCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAg                                  <  2:3552199/93‑1 (MQ=255)

                                                      ggggCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGCTGTAGAAGTCAGCGTTCAg                                  <  2:6082632/93‑1 (MQ=255)

                                                        ggCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGa                                <  1:5837885/93‑1 (MQ=255)

                                                        ggCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGa                                <  2:3151906/93‑1 (MQ=255)

                                                         gCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGAt                               <  2:4162880/93‑1 (MQ=255)

                                                           aGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATgg                             >  2:4909774/1‑93 (MQ=255)

                                                            ggggCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggc                            >  2:1232466/1‑93 (MQ=255)

                                                             gggCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggcg                           >  2:2182939/1‑93 (MQ=255)

                                                             gggCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggcg                           <  2:5589885/93‑1 (MQ=255)

                                                              ggCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggcgg                          <  1:825419/93‑1 (MQ=255)

                                                              ggCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggcgg                          <  2:2525916/93‑1 (MQ=255)

                                                               gCGTCACCTAACAATCTGCTGCATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATggcggc                         <  1:2252712/93‑1 (MQ=255)

                                                                 gTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCAc                       >  2:2307263/1‑93 (MQ=255)

                                                                 gTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCAc                       >  1:4748367/1‑93 (MQ=255)

                                                                  tCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACt                      >  2:591352/1‑93 (MQ=255)

                                                                  tCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACt                      >  2:1526868/1‑93 (MQ=255)

                                                                  tCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACt                      >  2:4657296/1‑93 (MQ=255)

                                                                   cACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACtt                     <  2:2402321/93‑1 (MQ=255)

                                                                   cACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACtt                     >  1:3871639/1‑93 (MQ=255)

                                                                    aCCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTta                    >  1:5016168/1‑93 (MQ=255)

                                                                     ccTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTtat                   >  1:1820326/1‑93 (MQ=255)

                                                                      cTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTtata                  >  1:2082022/1‑93 (MQ=255)

                                                                       tAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATaa                 <  1:2702831/93‑1 (MQ=255)

                                                                        aaCAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAAc                >  2:2341365/1‑93 (MQ=255)

                                                                        aaCAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAAc                <  1:3523150/93‑1 (MQ=255)

                                                                         aCAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACa               <  2:1756810/93‑1 (MQ=255)

                                                                          cAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACAt              <  1:5735314/93‑1 (MQ=255)

                                                                           aaTCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATc             <  1:156234/93‑1 (MQ=255)

                                                                           aaTCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATc             <  2:586223/93‑1 (MQ=255)

                                                                               tgctgGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGa         <  2:2659241/93‑1 (MQ=255)

                                                                                gctgGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGAt        <  2:5273738/93‑1 (MQ=255)

                                                                                 ctgGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATg       <  1:953380/93‑1 (MQ=255)

                                                                                    gATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGcc    >  2:2817244/1‑93 (MQ=255)

                                                                                    gATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGcc    >  1:3822176/1‑93 (MQ=255)

                                                                                    gATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGcc    <  2:1963443/93‑1 (MQ=255)

                                                                                     aTCAGCGCGATCAACTGGTGAGCGAATTAAACCAGGTTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCa   >  1:487592/1‑93 (MQ=255)

                                                                                     aTCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTTAGGATGGCGGCACTTATAACATCACGATGGACa   >  1:2011027/1‑93 (MQ=255)

                                                                                     aTCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCa   >  1:1613126/1‑93 (MQ=255)

                                                                                     aTCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCa   <  2:6271521/93‑1 (MQ=255)

                                                                                      tCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCaa  <  2:3936435/93‑1 (MQ=255)

TACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAACGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAA  >  NC_000913/1138114‑1138292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAACGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAATG  >  NC_000913/1138111‑1138294

AACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGC                                                                                            >  SRR4302533.87290/1‑94 (MQ=60)

AACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGC                                                                                            >  SRR4302533.4508366/1‑94 (MQ=60)

 ACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCG                                                                                           <  SRR4302533.4999486/94‑1 (MQ=60)

   TACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCG                                                                                         <  SRR4302533.4353619/94‑1 (MQ=60)

   TACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCG                                                                                         <  SRR4302533.5078156/94‑1 (MQ=60)

    ACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGA                                                                                        <  SRR4302533.5543738/94‑1 (MQ=60)

     CGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGAT                                                                                       >  SRR4302533.474250/1‑94 (MQ=60)

     CGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGAT                                                                                       >  SRR4302533.2857710/1‑94 (MQ=60)

      GCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATC                                                                                      <  SRR4302533.1500694/94‑1 (MQ=60)

      GCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATC                                                                                      <  SRR4302533.3278643/94‑1 (MQ=60)

       CTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCA                                                                                     >  SRR4302533.3870822/1‑94 (MQ=60)

        TAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAA                                                                                    >  SRR4302533.2038057/1‑94 (MQ=60)

         AAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAAC                                                                                   >  SRR4302533.416621/1‑94 (MQ=60)

          AACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACT                                                                                  <  SRR4302533.4156341/94‑1 (MQ=60)

          AACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACT                                                                                  <  SRR4302533.3039501/94‑1 (MQ=60)

           ACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTG                                                                                 <  SRR4302533.5172622/94‑1 (MQ=60)

           ACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTG                                                                                 <  SRR4302533.3107826/94‑1 (MQ=60)

           ACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTG                                                                                 <  SRR4302533.6001586/94‑1 (MQ=60)

            CAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGG                                                                                <  SRR4302533.4421215/94‑1 (MQ=60)

            CAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGG                                                                                <  SRR4302533.3258161/94‑1 (MQ=60)

            CAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGG                                                                                <  SRR4302533.6321847/94‑1 (MQ=60)

             AAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGT                                                                               >  SRR4302533.674357/1‑94 (MQ=60)

               ATTGCCAGCCTGATAGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGA                                                                             <  SRR4302533.3627069/94‑1 (MQ=60)

               ATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGA                                                                             >  SRR4302533.564761/1‑94 (MQ=60)

                TTGCCAGCGTGAACGATCAAATCGCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAG                                                                            <  SRR4302533.2196799/94‑1 (MQ=60)

                TTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAG                                                                            <  SRR4302533.6261010/94‑1 (MQ=60)

                TTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAG                                                                            <  SRR4302533.5887671/94‑1 (MQ=60)

                 TGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGC                                                                           <  SRR4302533.4427596/94‑1 (MQ=60)

                  GCCAGCCTGAACGATAAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCG                                                                          <  SRR4302533.4162793/94‑1 (MQ=60)

                   CCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGA                                                                         >  SRR4302533.4431047/1‑94 (MQ=60)

                   CCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGA                                                                         >  SRR4302533.4283066/1‑94 (MQ=60)

                     AGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAT                                                                       >  SRR4302533.470645/1‑94 (MQ=60)

                     AGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAT                                                                       >  SRR4302533.1971990/1‑94 (MQ=60)

                     AGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAT                                                                       >  SRR4302533.3792250/1‑94 (MQ=60)

                     AGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAAT                                                                       >  SRR4302533.5601645/1‑94 (MQ=60)

                       CCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGCATTA                                                                     >  SRR4302533.2895854/1‑94 (MQ=60)

                       CCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTA                                                                     >  SRR4302533.1356075/1‑94 (MQ=60)

                       CCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTA                                                                     >  SRR4302533.4882410/1‑94 (MQ=60)

                        CTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAA                                                                    >  SRR4302533.2470490/1‑94 (MQ=60)

                         TGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAA                                                                   <  SRR4302533.923285/94‑1 (MQ=60)

                         TGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAA                                                                   <  SRR4302533.118111/94‑1 (MQ=60)

                         TGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAA                                                                   <  SRR4302533.1086121/94‑1 (MQ=60)

                         TGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAA                                                                   >  SRR4302533.4874208/1‑94 (MQ=60)

                         TGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAA                                                                   <  SRR4302533.1769378/94‑1 (MQ=60)

                          GAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAC                                                                  >  SRR4302533.5691881/1‑94 (MQ=60)

                          GAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAC                                                                  >  SRR4302533.4320835/1‑94 (MQ=60)

                            ACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACTATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCA                                                                <  SRR4302533.3402714/94‑1 (MQ=60)

                            ACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCA                                                                >  SRR4302533.5904506/1‑94 (MQ=60)

                             ccagCAAATCTCGCTCCTGAGAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAG                                                               <  SRR4302533.4274898/90‑1 (MQ=60)

                             CGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAG                                                               <  SRR4302533.5759236/94‑1 (MQ=60)

                             CGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAG                                                               <  SRR4302533.974804/94‑1 (MQ=60)

                             CGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAG                                                               <  SRR4302533.102142/94‑1 (MQ=60)

                             CGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAG                                                               <  SRR4302533.3241926/94‑1 (MQ=60)

                              GATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGA                                                              >  SRR4302533.3952122/1‑94 (MQ=60)

                               ATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGAT                                                             >  SRR4302533.4426020/1‑94 (MQ=60)

                                TCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAATCAGATT                                                            >  SRR4302533.5717334/1‑94 (MQ=60)

                                 CAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTG                                                           <  SRR4302533.3857968/94‑1 (MQ=60)

                                 CAAAGCACGCGCCTCACAGTCGTGGCTGCAGGCGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTCGTGAGCGAATTAAACCAGATTG                                                           <  SRR4302533.3857828/94‑1 (MQ=60)

                                  AAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGT                                                          >  SRR4302533.634265/1‑94 (MQ=60)

                                  AAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGT                                                          >  SRR4302533.4424251/1‑94 (MQ=60)

                                   AATCTGGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGGTCAGCGCGATCAACTGGTGAGGGAATAAAACCAGATTGTG                                                         >  SRR4302533.560790/1‑94 (MQ=60)

                                   AATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAAGCAGATTGTT                                                         >  SRR4302533.4977411/1‑94 (MQ=60)

                                   AATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTT                                                         <  SRR4302533.4624330/94‑1 (MQ=60)

                                       TCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTG                                                     <  SRR4302533.5905969/94‑1 (MQ=60)

                                          CGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAG                                                  <  SRR4302533.5570244/94‑1 (MQ=60)

                                          CGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAG                                                  >  SRR4302533.499839/1‑94 (MQ=60)

                                          CGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAG                                                  >  SRR4302533.4341645/1‑94 (MQ=60)

                                           GCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGA                                                 >  SRR4302533.330977/1‑94 (MQ=60)

                                            CCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAA                                                >  SRR4302533.2495895/1‑94 (MQ=60)

                                            CCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAA                                                <  SRR4302533.1163635/94‑1 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               <  SRR4302533.4454700/94‑1 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               <  SRR4302533.2262757/94‑1 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               >  SRR4302533.2785681/1‑94 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               <  SRR4302533.4347136/94‑1 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               >  SRR4302533.2834937/1‑94 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               >  SRR4302533.319261/1‑94 (MQ=60)

                                             CTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAG                                               >  SRR4302533.3293231/1‑94 (MQ=60)

                                              TGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGT                                              <  SRR4302533.6136998/94‑1 (MQ=60)

                                              TGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGT                                              >  SRR4302533.4429200/1‑94 (MQ=60)

                                               GACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTC                                             <  SRR4302533.56066/94‑1 (MQ=60)

                                               GACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTC                                             <  SRR4302533.1528029/94‑1 (MQ=60)

                                                ACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCA                                            <  SRR4302533.125482/94‑1 (MQ=60)

                                                ACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCA                                            <  SRR4302533.3577534/94‑1 (MQ=60)

                                                 CAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTTGTGTAGAAGTCAG                                           >  SRR4302533.2662005/1‑94 (MQ=60)

                                                 CAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAG                                           >  SRR4302533.322864/1‑94 (MQ=60)

                                                  AGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGC                                          >  SRR4302533.294228/1‑94 (MQ=60)

                                                     CGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTT                                       <  SRR4302533.1243638/94‑1 (MQ=60)

                                                     CGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTT                                       >  SRR4302533.685839/1‑94 (MQ=60)

                                                      GTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTC                                      >  SRR4302533.3730835/1‑94 (MQ=60)

                                                       TGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCA                                     >  SRR4302533.746711/1‑94 (MQ=60)

                                                       TGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCA                                     <  SRR4302533.5324672/94‑1 (MQ=60)

                                                        GGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAG                                    <  SRR4302533.3823523/94‑1 (MQ=60)

                                                        GGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAG                                    <  SRR4302533.5012592/94‑1 (MQ=60)

                                                        GGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAG                                    <  SRR4302533.1893764/94‑1 (MQ=60)

                                                        GGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAG                                    <  SRR4302533.179827/94‑1 (MQ=60)

                                                           GGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGAT                                 <  SRR4302533.444633/94‑1 (MQ=60)

                                                           GGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGAT                                 <  SRR4302533.5873182/94‑1 (MQ=60)

                                                           GGCAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGAT                                 <  SRR4302533.1616132/94‑1 (MQ=60)

                                                             CAGGGGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGG                               >  SRR4302533.3901396/1‑94 (MQ=60)

                                                                 GGCGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGC                           <  SRR4302533.830263/94‑1 (MQ=60)

                                                                  GCGTCACCTAACAATCTGCTGCATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCA                          <  SRR4302533.2266640/94‑1 (MQ=60)

                                                                   CGTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCAC                         >  SRR4302533.4777154/1‑94 (MQ=60)

                                                                    GTCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACT                        >  SRR4302533.5366414/1‑94 (MQ=60)

                                                                     TCACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTT                       >  SRR4302533.3895269/1‑94 (MQ=60)

                                                                      CACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTA                      >  SRR4302533.5046556/1‑94 (MQ=60)

                                                                       ACCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTAT                     >  SRR4302533.1831445/1‑94 (MQ=60)

                                                                        CCTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATA                    >  SRR4302533.2094836/1‑94 (MQ=60)

                                                                         CTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAA                   <  SRR4302533.981025/94‑1 (MQ=60)

                                                                         CTAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAA                   <  SRR4302533.2695962/94‑1 (MQ=60)

                                                                          TAACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAAC                  <  SRR4302533.2719409/94‑1 (MQ=60)

                                                                           AACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACA                 <  SRR4302533.3544866/94‑1 (MQ=60)

                                                                            ACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACAT                <  SRR4302533.521653/94‑1 (MQ=60)

                                                                            ACAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACAT                <  SRR4302533.1203395/94‑1 (MQ=60)

                                                                             CAATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATC               <  SRR4302533.5769934/94‑1 (MQ=60)

                                                                              AATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCA              <  SRR4302533.157230/94‑1 (MQ=60)

                                                                               ATCTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCAC             >  SRR4302533.591659/1‑94 (MQ=60)

                                                                               ATCTGCTGGATCAGCGCGATCAACTGGTAAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCAC             <  SRR4302533.2470595/94‑1 (MQ=60)

                                                                                 CTGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGA           >  SRR4302533.4717015/1‑94 (MQ=60)

                                                                                  TGCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCTGCGTTCAGGATGGCGGCACTTATAACATCACGAT          <  SRR4302533.5056155/94‑1 (MQ=60)

                                                                                   GCTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATG         >  SRR4302533.5819930/1‑94 (MQ=60)

                                                                                    CTGGATCAGCGCGATCAACTGGTGAGCGAATTAAGCCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGG        <  SRR4302533.1748423/94‑1 (MQ=60)

                                                                                    CTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGG        <  SRR4302533.1748424/94‑1 (MQ=60)

                                                                                    CTGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGG        <  SRR4302533.958979/94‑1 (MQ=60)

                                                                                     TGGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGC       <  SRR4302533.4909736/94‑1 (MQ=60)

                                                                                      GGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCC      <  SRR4302533.4321895/94‑1 (MQ=60)

                                                                                      GGATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCC      >  SRR4302533.3845545/1‑94 (MQ=60)

                                                                                       GATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGGTTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCA     >  SRR4302533.490508/1‑94 (MQ=60)

                                                                                       GATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTTAGGATGGCGGCACTTATAACATCACGATGGACA     >  SRR4302533.2023416/1‑94 (MQ=60)

                                                                                       GATCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCA     >  SRR4302533.1622903/1‑94 (MQ=60)

                                                                                         TCAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAAT   <  SRR4302533.3732620/94‑1 (MQ=60)

                                                                                          CAGCGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAATG  >  SRR4302533.1098457/1‑94 (MQ=60)

AACTACGCTAAACAAATTGCCAGCCTGAACGATCAAATCTCGCGCCTGACAGGCGTGGGGGCAGGGGCGTCACCTAACAATCTGCTGGATCAACGCGATCAACTGGTGAGCGAATTAAACCAGATTGTTGGTGTAGAAGTCAGCGTTCAGGATGGCGGCACTTATAACATCACGATGGCCAATG  >  NC_000913/1138111‑1138294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`