Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,173,983 |
C→T |
G136R (GGG→AGG) |
ycfT ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,173,983 | 0 | C | T | 99.5%
| 791.9
/ NA
| 211 | G136R (GGG→AGG) | ycfT | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (96/114); minor base A (1/0); total (97/114) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 219 total aligned reads displayed.
GCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAC > NC_000913/1173893‑1174072
|
gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGt < 2:4007626/93‑1 (MQ=255)
gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGt < 1:4623253/93‑1 (MQ=255)
gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGt < 2:2102624/93‑1 (MQ=255)
gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGt < 1:87814/93‑1 (MQ=255)
gCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGt < 2:5016129/93‑1 (MQ=255)
cAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCtgtg < 1:5641204/93‑1 (MQ=255)
aGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGc < 1:3390132/93‑1 (MQ=255)
aGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGc > 2:1437186/1‑93 (MQ=255)
gcgcCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCa < 1:4268554/93‑1 (MQ=255)
gcgcCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCa > 1:192677/1‑93 (MQ=255)
gcgcCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCa > 1:5973670/1‑93 (MQ=255)
ccAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGa > 2:5789749/1‑93 (MQ=255)
cAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGaa > 1:3036017/1‑93 (MQ=255)
aGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAAc < 2:704199/93‑1 (MQ=255)
aGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAAc > 1:127341/1‑93 (MQ=255)
gACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACt > 1:4356615/1‑93 (MQ=255)
gACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACt > 1:5386044/1‑93 (MQ=255)
gACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACt < 1:1223310/93‑1 (MQ=255)
aCGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTc < 1:4969370/93‑1 (MQ=255)
cGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCa < 2:3035326/93‑1 (MQ=255)
gCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCAcc > 2:2072368/1‑93 (MQ=255)
gCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCAcc > 1:45107/1‑93 (MQ=255)
gCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCAcc > 2:4471449/1‑93 (MQ=255)
tAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCgg > 1:5066552/1‑93 (MQ=255)
tAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCgg > 2:5320307/1‑93 (MQ=255)
aaaaaTTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGt < 2:2780901/93‑1 (MQ=255)
aaaaaTTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGt > 1:954421/1‑93 (MQ=255)
aaTTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGCTGGa > 2:337520/1‑93 (MQ=255)
aTTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGaa < 1:4205007/93‑1 (MQ=255)
ttttACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAAt < 1:4019046/93‑1 (MQ=255)
ttACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCg < 2:1809777/93‑1 (MQ=255)
tACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATa < 2:1331694/93‑1 (MQ=255)
tACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATa < 1:675726/93‑1 (MQ=255)
aCCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATaa < 1:5216313/93‑1 (MQ=255)
aCCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATaa < 1:1758605/93‑1 (MQ=255)
aCCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATaa < 2:658663/93‑1 (MQ=255)
ccACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAg < 2:4422672/93‑1 (MQ=255)
ccACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAg < 1:2196757/93‑1 (MQ=255)
cACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGc > 1:2284557/1‑93 (MQ=255)
aCGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCg > 2:1577523/1‑93 (MQ=255)
gAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGc > 2:4556350/1‑93 (MQ=255)
gAAATAGACAATTAACGCATACAGATACCACAAGCAGGTGCTGGCGGCGATCATCCAGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGc > 1:6309473/1‑93 (MQ=255)
aaaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCa < 2:1651688/93‑1 (MQ=255)
aaaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGGGGAATCGGCATAAGCGGCa > 1:1516226/1‑93 (MQ=255)
aaTAGACAATTAACGCATACAGATACCACAAGCTTGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt > 1:2411634/1‑93 (MQ=255)
aaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt > 2:2202600/1‑93 (MQ=255)
aaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt < 2:5746825/93‑1 (MQ=255)
aaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt < 2:810977/93‑1 (MQ=255)
aaTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt < 1:4751333/93‑1 (MQ=255)
aaTAGACAATAAACGCATACAGATAACACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAt < 2:1093946/93‑1 (MQ=255)
aTAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAtt > 1:2830235/1‑93 (MQ=255)
tAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTg < 1:1748343/93‑1 (MQ=255)
aGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTgg < 1:5434421/93‑1 (MQ=255)
gACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGa < 2:5440107/93‑1 (MQ=255)
aCAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATCAGCGGCATTGGAg < 2:6051659/93‑1 (MQ=255)
ttAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCAt > 1:1120990/1‑93 (MQ=255)
gCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCtt > 2:3806888/1‑93 (MQ=255)
cATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTa < 2:1163871/93‑1 (MQ=255)
cATACAGATACCACAAGCTGGTGCTGGCGGCGATCATCCTGTGCACGAACTCACCGGTGAAATCGGCATAAGACGCATTGGAGGCATTGCGTa > 2:3499045/1‑93 (MQ=255)
aTACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTaa > 1:2108782/1‑93 (MQ=255)
tACAGTTACCACAAGCTGGTGCTGTCGGTGATCATCCGGTGCAGGAACTCACCGTTGGAATCGTCATAAGCGGCATTGGATGCATTGCTTaaa < 2:3345822/93‑1 (MQ=255)
tACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTaaa > 1:4796560/1‑93 (MQ=255)
tACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTaaa > 1:3653832/1‑93 (MQ=255)
cAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATc < 2:5912756/93‑1 (MQ=255)
cAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATc < 1:3010358/93‑1 (MQ=255)
aGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcg > 2:1545444/1‑93 (MQ=255)
aGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcg > 2:4919005/1‑93 (MQ=255)
gATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcgg > 2:1849908/1‑92 (MQ=255)
gATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcgc > 1:3826789/1‑93 (MQ=255)
aTACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcgcg < 2:2324821/93‑1 (MQ=255)
tACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCgcgc > 2:3643113/1‑93 (MQ=255)
tACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCgcgc < 2:4071781/93‑1 (MQ=255)
tACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCgcgc > 2:311842/1‑93 (MQ=255)
tACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCgcgc > 1:5752505/1‑93 (MQ=255)
cacaAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCa < 1:1562847/93‑1 (MQ=255)
cacaAGCGGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCa < 2:1154774/93‑1 (MQ=255)
acaAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAg > 1:6147975/1‑93 (MQ=255)
acaAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAg < 2:5852063/93‑1 (MQ=255)
acaAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAg < 1:2730185/93‑1 (MQ=255)
aaGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGt < 1:1768249/93‑1 (MQ=255)
aGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTg > 1:4440945/1‑93 (MQ=255)
cTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgcc > 2:4449304/1‑93 (MQ=255)
ggTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgccag > 1:2009266/1‑93 (MQ=255)
gCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgccagcca < 1:3067688/93‑1 (MQ=255)
cTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAc < 2:2124102/93‑1 (MQ=255)
cTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAc < 2:5105485/93‑1 (MQ=255)
cTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAc < 2:2357977/93‑1 (MQ=255)
ggCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTg < 2:3708965/93‑1 (MQ=255)
gCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTgg < 2:2525811/93‑1 (MQ=255)
cGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGt > 2:5674528/1‑93 (MQ=255)
ggTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGtt > 2:4588282/1‑93 (MQ=255)
gATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCAACTGGTTCAg > 1:1348717/1‑93 (MQ=255)
atcatcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAgc > 1:4386651/1‑93 (MQ=255)
catcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAgcgc < 1:3758516/93‑1 (MQ=255)
catcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAgcgc < 1:1438748/93‑1 (MQ=255)
atcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGGCAGCCACTGGTTCAGCGCa > 2:4181643/1‑93 (MQ=255)
tcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAc < 1:4077313/93‑1 (MQ=255)
tcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAc > 2:499209/1‑93 (MQ=255)
tcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAc > 2:2886417/1‑93 (MQ=255)
tcCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAc > 1:6186022/1‑93 (MQ=255)
|
GCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAC > NC_000913/1173893‑1174072
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTA > NC_000913/1173890‑1174075
|
GTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCT < SRR4302533.476842/94‑1 (MQ=60)
GCGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACGGATACCACAAGCTGGTGCTGGCGGTGATCATCCT > SRR4302533.5640459/1‑94 (MQ=60)
TGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTG > SRR4302533.255776/1‑94 (MQ=60)
GCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTG < SRR4302533.4651277/94‑1 (MQ=60)
GCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTG < SRR4302533.2690438/94‑1 (MQ=60)
GCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTG < SRR4302533.88375/94‑1 (MQ=60)
CAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGC < SRR4302533.5675302/94‑1 (MQ=60)
AGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCA > SRR4302533.6009826/1‑94 (MQ=60)
AGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCA < SRR4302533.3411068/94‑1 (MQ=60)
AGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCA > SRR4302533.5425581/1‑94 (MQ=60)
AGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCA > SRR4302533.2004201/1‑94 (MQ=60)
AGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCA > SRR4302533.193891/1‑94 (MQ=60)
GCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAG > SRR4302533.5337653/1‑94 (MQ=60)
GCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAG < SRR4302533.4294252/94‑1 (MQ=60)
CGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGG < SRR4302533.3522394/94‑1 (MQ=60)
CGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGG < SRR4302533.4283360/94‑1 (MQ=60)
GCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGA < SRR4302533.4189662/94‑1 (MQ=60)
CCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAA > SRR4302533.3054594/1‑94 (MQ=60)
CAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAAC > SRR4302533.128138/1‑94 (MQ=60)
AGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACT > SRR4302533.5418404/1‑94 (MQ=60)
AGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACT > SRR4302533.4382911/1‑94 (MQ=60)
GACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTC < SRR4302533.123174/94‑1 (MQ=60)
GACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTC < SRR4302533.1230647/94‑1 (MQ=60)
GACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTC > SRR4302533.4474832/1‑94 (MQ=60)
ACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCA < SRR4302533.4361696/94‑1 (MQ=60)
ACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCA < SRR4302533.4999499/94‑1 (MQ=60)
GGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACC > SRR4302533.45420/1‑94 (MQ=60)
CTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGG > SRR4302533.4525503/1‑94 (MQ=60)
CTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGG > SRR4302533.5097153/1‑94 (MQ=60)
TAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGT > SRR4302533.960026/1‑94 (MQ=60)
AAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGTGGTGATCATCCTGTGCAGGAACTCACCGGTGGA < SRR4302533.1777565/94‑1 (MQ=60)
ATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAAT < SRR4302533.4230445/94‑1 (MQ=60)
TTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATC < SRR4302533.4043519/94‑1 (MQ=60)
TTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGG < SRR4302533.927634/94‑1 (MQ=60)
CATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCAT < SRR4302533.1458460/94‑1 (MQ=60)
ATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATA > SRR4302533.1645734/1‑94 (MQ=60)
TACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAA < SRR4302533.679719/94‑1 (MQ=60)
ACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAG < SRR4302533.406694/94‑1 (MQ=60)
ACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAG < SRR4302533.5247718/94‑1 (MQ=60)
ACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAG < SRR4302533.1769324/94‑1 (MQ=60)
CCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGC < SRR4302533.2210293/94‑1 (MQ=60)
CCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGC > SRR4302533.2298696/1‑94 (MQ=60)
CGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGC < SRR4302533.1573/94‑1 (MQ=60)
CGAAATAGACAATTAACGCATACAGATACCACAAGCAGGTGCTGGCGGCGATCATCCAGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGC > SRR4302533.6347411/1‑94 (MQ=60)
GAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGGGGAATCGGCATAAGCGGCA > SRR4302533.1525356/1‑94 (MQ=60)
AAATAGACAATTAACGCATACAGATACCACAAGCTTGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAT > SRR4302533.2426528/1‑94 (MQ=60)
AAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAT < SRR4302533.2011842/94‑1 (MQ=60)
AAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCAT < SRR4302533.5784422/94‑1 (MQ=60)
AATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATT > SRR4302533.2847653/1‑94 (MQ=60)
AATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATT < SRR4302533.4780140/94‑1 (MQ=60)
AATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATT > SRR4302533.6334745/1‑94 (MQ=60)
ATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTG < SRR4302533.5078719/94‑1 (MQ=60)
TAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGG < SRR4302533.1758987/94‑1 (MQ=60)
TAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGG > SRR4302533.2284428/1‑94 (MQ=60)
AGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGA < SRR4302533.4806502/94‑1 (MQ=60)
AGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGA < SRR4302533.5467147/94‑1 (MQ=60)
GACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAG < SRR4302533.4411777/94‑1 (MQ=60)
GACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAG < SRR4302533.1149434/94‑1 (MQ=60)
ATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCAT > SRR4302533.143470/1‑94 (MQ=60)
ATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCAT > SRR4302533.1127640/1‑94 (MQ=60)
ATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCAT < SRR4302533.815586/94‑1 (MQ=60)
ACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCT < SRR4302533.781118/94‑1 (MQ=60)
CGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTT < SRR4302533.5220722/94‑1 (MQ=60)
CGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTT > SRR4302533.1354121/1‑94 (MQ=60)
CGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTT > SRR4302533.5003538/1‑94 (MQ=60)
CATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAA > SRR4302533.2121790/1‑94 (MQ=60)
CATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGAGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAA > SRR4302533.2124244/1‑94 (MQ=60)
ATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAA > SRR4302533.4825616/1‑94 (MQ=60)
ATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAA > SRR4302533.3676297/1‑94 (MQ=60)
ATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAA > SRR4302533.4206086/1‑94 (MQ=60)
ATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAA > SRR4302533.5957501/1‑94 (MQ=60)
ATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAA > SRR4302533.3688023/1‑94 (MQ=60)
TACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAAT < SRR4302533.4456800/94‑1 (MQ=60)
TACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAAT < SRR4302533.2844990/94‑1 (MQ=60)
ACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATC > SRR4302533.2512361/1‑94 (MQ=60)
CAGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCG < SRR4302533.3028776/94‑1 (MQ=60)
AGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGGGGCATTGGAGGCATTGCTTAAATCGC > SRR4302533.5521327/1‑94 (MQ=60)
AGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGC > SRR4302533.4639118/1‑94 (MQ=60)
AGATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGC > SRR4302533.3850183/1‑94 (MQ=60)
GAAACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCG < SRR4302533.2972643/94‑1 (MQ=60)
ATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGC > SRR4302533.5787212/1‑94 (MQ=60)
ATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGC > SRR4302533.236595/1‑94 (MQ=60)
ATACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGC > SRR4302533.1543672/1‑94 (MQ=60)
TACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCT > SRR4302533.304358/1‑94 (MQ=60)
TACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCT < SRR4302533.3963522/94‑1 (MQ=60)
ACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTC > SRR4302533.1854755/1‑94 (MQ=60)
ACCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTC > SRR4302533.3055280/1‑94 (MQ=60)
CCACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGTCATTGGAGGCATTGCTTAAATCGCGCTCA < SRR4302533.3800892/94‑1 (MQ=60)
CACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAG > SRR4302533.6184987/1‑94 (MQ=60)
CACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAG < SRR4302533.1572256/94‑1 (MQ=60)
ACAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGG < SRR4302533.2746930/94‑1 (MQ=60)
CAAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGT < SRR4302533.6144597/94‑1 (MQ=60)
AAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTG < SRR4302533.1779015/94‑1 (MQ=60)
AAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTG < SRR4302533.3199441/94‑1 (MQ=60)
AAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTG > SRR4302533.475350/1‑94 (MQ=60)
AAGCTGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTG > SRR4302533.4467794/1‑94 (MQ=60)
TGGTGCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAG > SRR4302533.2021643/1‑94 (MQ=60)
GCTGGCGGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAC < SRR4302533.3086528/94‑1 (MQ=60)
GGTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTC > SRR4302533.1769030/1‑94 (MQ=60)
GTGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCA < SRR4302533.5911563/94‑1 (MQ=60)
TGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAG < SRR4302533.4878224/94‑1 (MQ=60)
TGATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCAACTGGTTCAG > SRR4302533.1356834/1‑94 (MQ=60)
GATCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGC > SRR4302533.4413137/1‑94 (MQ=60)
TCATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGC < SRR4302533.61962/94‑1 (MQ=60)
CATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCA < SRR4302533.639282/94‑1 (MQ=60)
CATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCA < SRR4302533.1447431/94‑1 (MQ=60)
CATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCA < SRR4302533.3781556/94‑1 (MQ=60)
ATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAC > SRR4302533.6223156/1‑94 (MQ=60)
ATCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCAC < SRR4302533.3500767/94‑1 (MQ=60)
TCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACT < SRR4302533.2030973/94‑1 (MQ=60)
TCCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACT < SRR4302533.4102134/94‑1 (MQ=60)
CCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTT < SRR4302533.2737306/94‑1 (MQ=60)
CCTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTT > SRR4302533.5389360/1‑94 (MQ=60)
CTGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTA > SRR4302533.5809264/1‑94 (MQ=60)
|
GTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTA > NC_000913/1173890‑1174075
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
