Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,186,123	C→T	R353C (CGC→TGC)	pepT →	putative peptidase T

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,186,123	0	C	T	100.0%	820.9 / NA	218	R353C (CGC→TGC)	pepT	putative peptidase T
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (125/93); total (125/93)

Only 100 of 227 total aligned reads displayed.

CGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCCGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAT  >  NC_000913/1186033‑1186212

cgcgAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCtgc                                                                                         <  2:2690401/93‑1 (MQ=255)

cgcgAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCtgc                                                                                         <  1:3834883/93‑1 (MQ=255)

cgagagaAAGTTGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCtgc                                                                                         <  1:4486548/90‑1 (MQ=255)

 gcgAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCtgcg                                                                                        <  2:4889178/93‑1 (MQ=255)

  cgAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCgg                                                                                       >  1:1821258/1‑93 (MQ=255)

   gagaAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCggt                                                                                      <  1:3210947/93‑1 (MQ=255)

   gagaAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCggt                                                                                      >  1:5816978/1‑93 (MQ=255)

    agaAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCggtg                                                                                     >  2:6042945/1‑93 (MQ=255)

     gaAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCggtgg                                                                                    >  2:1282346/1‑93 (MQ=255)

       aaGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTa                                                                                  >  2:1885266/1‑93 (MQ=255)

        aGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAc                                                                                 >  1:1649781/1‑93 (MQ=255)

        aGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAc                                                                                 <  1:1574292/93‑1 (MQ=255)

         gTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAcc                                                                                >  2:433017/1‑93 (MQ=255)

         gTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAcc                                                                                >  1:481327/1‑93 (MQ=255)

         gTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAcc                                                                                >  1:4515267/1‑93 (MQ=255)

         gTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAcc                                                                                >  2:5319668/1‑93 (MQ=255)

         gTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAcc                                                                                >  2:5491206/1‑93 (MQ=255)

          tGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCg                                                                               <  2:3348181/93‑1 (MQ=255)

           ggTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGa                                                                              <  1:6278613/93‑1 (MQ=255)

                 gCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGgcgc                                                                        >  2:5760974/1‑93 (MQ=255)

                 gCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGgcgc                                                                        <  1:969417/93‑1 (MQ=255)

                  cATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGgcgcg                                                                       >  1:2141538/1‑93 (MQ=255)

                    tCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCa                                                                     <  1:1247356/93‑1 (MQ=255)

                    tCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCa                                                                     >  1:717113/1‑93 (MQ=255)

                    tCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCa                                                                     >  1:1888702/1‑93 (MQ=255)

                    tCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCa                                                                     >  2:5028097/1‑93 (MQ=255)

                     ccGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAg                                                                    >  1:6187152/1‑93 (MQ=255)

                     ccGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAg                                                                    <  2:1357507/93‑1 (MQ=255)

                        cATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTg                                                                 >  1:3328821/1‑93 (MQ=255)

                          tatTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTc                                                               >  1:3310943/1‑93 (MQ=255)

                           atTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCg                                                              <  1:5908436/93‑1 (MQ=255)

                           atTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCg                                                              <  2:714164/93‑1 (MQ=255)

                            ttCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGt                                                             <  2:4724698/93‑1 (MQ=255)

                             tctcGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGtt                                                            <  1:5486548/93‑1 (MQ=255)

                              ctcGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGttt                                                           <  2:2633283/93‑1 (MQ=255)

                               tcGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTa                                                          <  1:4067268/93‑1 (MQ=255)

                                cGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTAt                                                         <  1:4340572/93‑1 (MQ=255)

                                 gATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATg                                                        <  2:6217585/93‑1 (MQ=255)

                                  atatCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATgg                                                       >  1:2753238/1‑93 (MQ=255)

                                   tatCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATggg                                                      <  2:4220811/93‑1 (MQ=255)

                                    atCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGa                                                     <  1:5602754/93‑1 (MQ=255)

                                    atCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGa                                                     <  1:851772/93‑1 (MQ=255)

                                     tCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGAt                                                    >  1:170283/1‑93 (MQ=255)

                                       gCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTa                                                  >  2:5367829/1‑93 (MQ=255)

                                         ccAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTAcc                                                <  2:2872766/93‑1 (MQ=255)

                                         ccAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTAcc                                                >  1:6042560/1‑93 (MQ=255)

                                          cagcagGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCg                                               >  2:3706750/1‑93 (MQ=255)

                                            gcagGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTg                                             >  1:5536507/1‑93 (MQ=255)

                                              agGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGcc                                           >  2:5093729/1‑93 (MQ=255)

                                              agGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGcc                                           >  2:1008280/1‑93 (MQ=255)

                                              agGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGcc                                           >  1:3415457/1‑93 (MQ=255)

                                               ggCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGccc                                          >  2:1925800/1‑93 (MQ=255)

                                                  gATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGaa                                       >  1:2907921/1‑93 (MQ=255)

                                                   aTGCGCGATTGCGATATTGAACCGTAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAc                                      <  2:795713/93‑1 (MQ=255)

                                                   aTGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAc                                      >  1:2401850/1‑93 (MQ=255)

                                                    tGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAcc                                     >  1:5827240/1‑93 (MQ=255)

                                                    tGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAcc                                     <  2:4411256/93‑1 (MQ=255)

                                                       gcgATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTCCCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGt                                  <  2:5882812/93‑1 (MQ=255)

                                                       gcgATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGt                                  >  1:1678379/1‑93 (MQ=255)

                                                        cgATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGtt                                 <  1:2991778/93‑1 (MQ=255)

                                                          aTTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCa                               <  1:3757879/93‑1 (MQ=255)

                                                          aTTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTACGGGATTACCGTGCACGAACCTGTTCa                               >  1:2249997/1‑93 (MQ=255)

                                                           ttGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCAc                              <  1:2045111/93‑1 (MQ=255)

                                                            tGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACt                             <  1:3077983/93‑1 (MQ=255)

                                                            tGCGATATCGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACt                             <  1:1180205/93‑1 (MQ=255)

                                                             gCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTg                            <  2:2095939/93‑1 (MQ=255)

                                                              cGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTgg                           <  1:2458314/93‑1 (MQ=255)

                                                               gATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGc                          >  2:3337733/1‑93 (MQ=255)

                                                               gATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGc                          >  1:4194982/1‑93 (MQ=255)

                                                               gATATTCAACCGGAACTGAAACCGATCTGCGGTGGTATCGACGGCTCGCAGTTGTCGGTTATGGGATTACGGTGCCCGTTCCTGGTCACTggg                          >  2:5432388/1‑92 (MQ=255)

                                                                atatTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCg                         >  2:1559962/1‑93 (MQ=255)

                                                                atatTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCg                         >  2:4184970/1‑93 (MQ=255)

                                                                 tatTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCgg                        >  1:442551/1‑93 (MQ=255)

                                                                  atTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGTCCGAACCTGTTCACTGGCGGt                       >  2:3046000/1‑93 (MQ=255)

                                                                  atTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGt                       <  2:4577257/93‑1 (MQ=255)

                                                                   ttGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACAGTGCCCGAACCTGTTCACTGGCGGtt                      >  2:5924707/1‑93 (MQ=255)

                                                                     gAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTAc                    >  1:3131579/1‑93 (MQ=255)

                                                                       aCCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACaa                  <  1:5190111/93‑1 (MQ=255)

                                                                        ccGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAAc                 >  2:88748/1‑93 (MQ=255)

                                                                        ccGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAAc                 <  2:363419/93‑1 (MQ=255)

                                                                         cGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACt                >  2:3957163/1‑93 (MQ=255)

                                                                         cGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACt                >  2:5957195/1‑93 (MQ=255)

                                                                           gAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTAt              <  1:4660635/93‑1 (MQ=255)

                                                                             aCTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCa            >  1:3726799/1‑93 (MQ=255)

                                                                             aCTGAAACCGATCTGCGGTGGTACCGACGGCGAGCAGTTGTCGTTTATGGGATTACCGTGCCCGACCCTGTTCACTGGCGGTTACAACTATCa            <  1:3242420/93‑1 (MQ=255)

                                                                              cTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCAt           <  1:433017/93‑1 (MQ=255)

                                                                               tGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATg          <  1:1051432/93‑1 (MQ=255)

                                                                               tGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATg          <  2:5684377/93‑1 (MQ=255)

                                                                               tGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGGTACAACTATCATg          >  1:814419/1‑93 (MQ=255)

                                                                                 gaaCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGt        <  1:3184768/92‑1 (MQ=255)

                                                                                 aaaCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGt        <  1:1279606/93‑1 (MQ=255)

                                                                                  aaCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTa       >  2:448103/1‑93 (MQ=255)

                                                                                  aaCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTa       <  1:5018991/93‑1 (MQ=255)

                                                                                  aaCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTa       <  2:5117037/93‑1 (MQ=255)

                                                                                   aCCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTaa      <  1:5369735/93‑1 (MQ=255)

                                                                                      gATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCa   >  2:3833940/1‑93 (MQ=255)

                                                                                       aTCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTCCCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAt  <  2:3456908/93‑1 (MQ=255)

                                                                                       aTCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAt  >  2:3480727/1‑93 (MQ=255)

                                                                                       aTCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAt  >  1:3923114/1‑93 (MQ=255)

                                                                                       aTCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAt  >  2:1692973/1‑93 (MQ=255)

CGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCCGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAT  >  NC_000913/1186033‑1186212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCCGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAGT  >  NC_000913/1186030‑1186216

ATGCGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCT                                                                                               <  SRR4302533.1635786/94‑1 (MQ=60)

ATGCGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAAACGATCT                                                                                               >  SRR4302533.759273/1‑94 (MQ=60)

AGGCGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCT                                                                                               <  SRR4302533.3651045/94‑1 (MQ=60)

   CGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCG                                                                                            <  SRR4302533.3858316/94‑1 (MQ=60)

   CGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCG                                                                                            <  SRR4302533.1763992/94‑1 (MQ=60)

   CGAGAGAAAGTTGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCG                                                                                            <  SRR4302533.4513711/94‑1 (MQ=60)

    GCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGG                                                                                           >  SRR4302533.1832383/1‑94 (MQ=60)

     CGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGT                                                                                          >  SRR4302533.5852116/1‑94 (MQ=60)

      GAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTG                                                                                         <  SRR4302533.3230724/94‑1 (MQ=60)

       AGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGG                                                                                        <  SRR4302533.746794/94‑1 (MQ=60)

       AGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGAAATTGAACCGGAACTGAACACGATCTGCGGTGG                                                                                        >  SRR4302533.2415876/1‑94 (MQ=60)

          AAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTAC                                                                                     >  SRR4302533.1659777/1‑94 (MQ=60)

           AGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACC                                                                                    <  SRR4302533.6132737/94‑1 (MQ=60)

           AGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACC                                                                                    >  SRR4302533.484202/1‑94 (MQ=60)

           AGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACC                                                                                    >  SRR4302533.4542608/1‑94 (MQ=60)

           AGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACC                                                                                    <  SRR4302533.1583772/94‑1 (MQ=60)

           AGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACC                                                                                    <  SRR4302533.3659870/94‑1 (MQ=60)

            GTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCG                                                                                   >  SRR4302533.3830787/1‑94 (MQ=60)

              GGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGAC                                                                                 >  SRR4302533.4499959/1‑94 (MQ=60)

              GGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGAC                                                                                 <  SRR4302533.6316098/94‑1 (MQ=60)

                 TGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGC                                                                              >  SRR4302533.474686/1‑94 (MQ=60)

                 TGAGCACCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGC                                                                              <  SRR4302533.3147661/94‑1 (MQ=60)

                  GAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCG                                                                             >  SRR4302533.1271526/1‑94 (MQ=60)

                    GCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCG                                                                           >  SRR4302533.4186394/1‑94 (MQ=60)

                    GCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCG                                                                           <  SRR4302533.975106/94‑1 (MQ=60)

                    GCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCG                                                                           >  SRR4302533.2154736/1‑94 (MQ=60)

                     CATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGC                                                                          >  SRR4302533.5766857/1‑94 (MQ=60)

                      ATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCA                                                                         <  SRR4302533.2535431/94‑1 (MQ=60)

                      ATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCA                                                                         >  SRR4302533.721340/1‑94 (MQ=60)

                      ATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCA                                                                         >  SRR4302533.1900240/1‑94 (MQ=60)

                      ATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCA                                                                         >  SRR4302533.1678360/1‑94 (MQ=60)

                       TCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAG                                                                        >  SRR4302533.6224289/1‑94 (MQ=60)

                       TCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAG                                                                        <  SRR4302533.1254805/94‑1 (MQ=60)

                         CGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTT                                                                      <  SRR4302533.1859962/94‑1 (MQ=60)

                          GCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTG                                                                     >  SRR4302533.3349392/1‑94 (MQ=60)

                           CATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGT                                                                    >  SRR4302533.5625638/1‑94 (MQ=60)

                            ATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTC                                                                   >  SRR4302533.3237426/1‑94 (MQ=60)

                            ATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTC                                                                   >  SRR4302533.3331387/1‑94 (MQ=60)

                            ATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTC                                                                   >  SRR4302533.2923477/1‑94 (MQ=60)

                             TATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCG                                                                  <  SRR4302533.4009337/94‑1 (MQ=60)

                             TATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCG                                                                  >  SRR4302533.746177/1‑94 (MQ=60)

                             TATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCG                                                                  >  SRR4302533.1506407/1‑94 (MQ=60)

                              ATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGT                                                                 <  SRR4302533.5944127/94‑1 (MQ=60)

                                TCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTT                                                               <  SRR4302533.5519621/94‑1 (MQ=60)

                                TCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTT                                                               >  SRR4302533.1612690/1‑94 (MQ=60)

                                  TCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTAT                                                             <  SRR4302533.4092028/94‑1 (MQ=60)

                                  TCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTAT                                                             <  SRR4302533.5258127/94‑1 (MQ=60)

                                   CGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATG                                                            <  SRR4302533.4366734/94‑1 (MQ=60)

                                    GATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGG                                                           >  SRR4302533.4588542/1‑94 (MQ=60)

                                    GATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGG                                                           <  SRR4302533.4231073/94‑1 (MQ=60)

                                    GATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGG                                                           >  SRR4302533.2770121/1‑94 (MQ=60)

                                       ATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGAT                                                        <  SRR4302533.5636609/94‑1 (MQ=60)

                                       ATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGAT                                                        >  SRR4302533.5695031/1‑94 (MQ=60)

                                       ATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGAT                                                        <  SRR4302533.856758/94‑1 (MQ=60)

                                       ATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGAT                                                        >  SRR4302533.171355/1‑94 (MQ=60)

                                        TCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATT                                                       >  SRR4302533.2192122/1‑94 (MQ=60)

                                         CGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTA                                                      >  SRR4302533.3288861/1‑94 (MQ=60)

                                           CCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACC                                                    >  SRR4302533.676439/1‑94 (MQ=60)

                                           CCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACC                                                    >  SRR4302533.6079170/1‑94 (MQ=60)

                                            CCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCG                                                   <  SRR4302533.5862114/94‑1 (MQ=60)

                                            CCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCG                                                   >  SRR4302533.844993/1‑94 (MQ=60)

                                             CAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGT                                                  >  SRR4302533.3265565/1‑94 (MQ=60)

                                             CAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGT                                                  >  SRR4302533.3119363/1‑94 (MQ=60)

                                             CAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGT                                                  >  SRR4302533.6169735/1‑94 (MQ=60)

                                              AGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTG                                                 >  SRR4302533.5569937/1‑94 (MQ=60)

                                              AGCAGGCGATGCGCGATTGCGATATTGAAACGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGTAGTTGTCGTTTATGGGATTACCGTG                                                 >  SRR4302533.2119442/1‑94 (MQ=60)

                                                CAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCC                                               >  SRR4302533.1819637/1‑94 (MQ=60)

                                                CAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCC                                               >  SRR4302533.6038262/1‑94 (MQ=60)

                                                CAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCC                                               >  SRR4302533.3436561/1‑94 (MQ=60)

                                                CAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCC                                               >  SRR4302533.4365843/1‑94 (MQ=60)

                                                  GGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCG                                             >  SRR4302533.4369527/1‑94 (MQ=60)

                                                    CGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAA                                           >  SRR4302533.5222106/1‑94 (MQ=60)

                                                    CGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAA                                           >  SRR4302533.2925773/1‑94 (MQ=60)

                                                     GATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAC                                          >  SRR4302533.3043196/1‑94 (MQ=60)

                                                     GATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAAC                                          >  SRR4302533.2416684/1‑94 (MQ=60)

                                                      ATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACC                                         >  SRR4302533.5862450/1‑94 (MQ=60)

                                                         CGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGT                                      <  SRR4302533.2943701/94‑1 (MQ=60)

                                                         CGCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGT                                      >  SRR4302533.1688546/1‑94 (MQ=60)

                                                          GCGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTT                                     <  SRR4302533.4394435/94‑1 (MQ=60)

                                                           CGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTC                                    <  SRR4302533.3337619/94‑1 (MQ=60)

                                                           CGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTC                                    <  SRR4302533.3010073/94‑1 (MQ=60)

                                                           CGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTC                                    <  SRR4302533.4885158/94‑1 (MQ=60)

                                                           CGATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTC                                    >  SRR4302533.3225160/1‑94 (MQ=60)

                                                           CGATTGCGATATTGAACCGGAACCGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTC                                    >  SRR4302533.3180537/1‑94 (MQ=60)

                                                            GATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTACGGGATTACCGTGCACGAACCTGTTCA                                   >  SRR4302533.2263904/1‑94 (MQ=60)

                                                             ATTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCAC                                  <  SRR4302533.3780917/94‑1 (MQ=60)

                                                              TTGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACT                                 <  SRR4302533.2057718/94‑1 (MQ=60)

                                                               TGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTG                                >  SRR4302533.152182/1‑94 (MQ=60)

                                                               TGCGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTG                                <  SRR4302533.3096870/94‑1 (MQ=60)

                                                               TGCGATATCGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTG                                <  SRR4302533.1187295/94‑1 (MQ=60)

                                                                 CGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGC                              >  SRR4302533.4220374/1‑94 (MQ=60)

                                                                 CGATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGC                              <  SRR4302533.2473482/94‑1 (MQ=60)

                                                                  GATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCG                             <  SRR4302533.553741/94‑1 (MQ=60)

                                                                  GATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCG                             <  SRR4302533.5171916/94‑1 (MQ=60)

                                                                   ATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGG                            >  SRR4302533.6301705/1‑94 (MQ=60)

                                                                   ATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGG                            >  SRR4302533.445197/1‑94 (MQ=60)

                                                                   ATATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGG                            <  SRR4302533.404752/94‑1 (MQ=60)

                                                                    TATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGT                           <  SRR4302533.2756388/94‑1 (MQ=60)

                                                                    TATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGT                           <  SRR4302533.1915251/94‑1 (MQ=60)

                                                                    TATTGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGT                           <  SRR4302533.452216/94‑1 (MQ=60)

                                                                       TGAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTAC                        >  SRR4302533.3150832/1‑94 (MQ=60)

                                                                        GAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACA                       >  SRR4302533.944661/1‑94 (MQ=60)

                                                                        GAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACA                       >  SRR4302533.3777386/1‑94 (MQ=60)

                                                                        GAACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACA                       >  SRR4302533.1071276/1‑94 (MQ=60)

                                                                         AACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAA                      >  SRR4302533.995766/1‑94 (MQ=60)

                                                                          ACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAAC                     <  SRR4302533.3376123/94‑1 (MQ=60)

                                                                          ACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAAC                     >  SRR4302533.3545127/1‑94 (MQ=60)

                                                                          ACCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAAC                     <  SRR4302533.5221427/94‑1 (MQ=60)

                                                                           CCGGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACT                    <  SRR4302533.1197969/94‑1 (MQ=60)

                                                                             GGAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTAT                  >  SRR4302533.16935/1‑94 (MQ=60)

                                                                              GAACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATC                 <  SRR4302533.4688879/94‑1 (MQ=60)

                                                                               AACTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCA                >  SRR4302533.3749660/1‑94 (MQ=60)

                                                                                ACTGAAACCGATCTGCGGTGGTACCGACGGCGAGCAGTTGTCGTTTATGGGATTACCGTGCCCGACCCTGTTCACTGGCGGTTACAACTATCAT               <  SRR4302533.3262404/94‑1 (MQ=60)

                                                                                 CTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATG              <  SRR4302533.2444441/94‑1 (MQ=60)

                                                                                 CTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATG              <  SRR4302533.435597/94‑1 (MQ=60)

                                                                                 CTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATG              <  SRR4302533.4706568/94‑1 (MQ=60)

                                                                                 CTGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGGTACAACTATCATG              >  SRR4302533.819186/1‑94 (MQ=60)

                                                                                  TGAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGG             <  SRR4302533.1057623/94‑1 (MQ=60)

                                                                                   GAAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGT            <  SRR4302533.3918137/94‑1 (MQ=60)

                                                                                    GAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTA           <  SRR4302533.3204356/94‑1 (MQ=60)

                                                                                    AAACCGATCTGCGGTGGTGCCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTA           <  SRR4302533.5422021/94‑1 (MQ=60)

                                                                                    AAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTA           <  SRR4302533.593765/94‑1 (MQ=60)

                                                                                    AAACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTA           <  SRR4302533.1287298/94‑1 (MQ=60)

                                                                                     AACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAA          >  SRR4302533.2163566/1‑94 (MQ=60)

                                                                                     AACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAA          <  SRR4302533.5049388/94‑1 (MQ=60)

                                                                                      ACCGATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAG         <  SRR4302533.5401997/94‑1 (MQ=60)

                                                                                         GATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCAT      >  SRR4302533.3947067/1‑94 (MQ=60)

                                                                                          ATCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATG     >  SRR4302533.4613969/1‑94 (MQ=60)

                                                                                           TCTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGA    <  SRR4302533.5590732/94‑1 (MQ=60)

                                                                                            CTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAG   <  SRR4302533.5175483/94‑1 (MQ=60)

                                                                                            CTGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAG   <  SRR4302533.5353485/94‑1 (MQ=60)

                                                                                             TGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAGT  >  SRR4302533.561025/1‑94 (MQ=60)

                                                                                             TGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAGT  <  SRR4302533.4762791/94‑1 (MQ=60)

ATGCGCGAGAAAGTGGTTGAGCATCCGCATATTCTCGATATCGCCCAGCAGGCGATGCGCGATTGCGATATTGAACCGGAACTGAAACCGATCCGCGGTGGTACCGACGGCGCGCAGTTGTCGTTTATGGGATTACCGTGCCCGAACCTGTTCACTGGCGGTTACAACTATCATGGTAAGCATGAGT  >  NC_000913/1186030‑1186216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`