Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,191,616	C→T	G80D (GGC→GAC)	ycfC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,191,616	0	C	T	99.4%	604.8 / NA	167	G80D (GGC→GAC)	ycfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (93/73); total (93/74)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 177 total aligned reads displayed.

CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTC  >  NC_000913/1191526‑1191705

gccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:1031629/92‑1 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          >  1:6205022/1‑93 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:4982514/93‑1 (MQ=255)

cccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGtcc                                                                                          <  1:4730924/93‑1 (MQ=255)

 ccAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCt                                                                                         >  1:3116544/1‑93 (MQ=255)

   agagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTgg                                                                                       <  1:1600484/93‑1 (MQ=255)

    gagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGc                                                                                      <  2:2110346/93‑1 (MQ=255)

    gagTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGc                                                                                      <  2:1487182/93‑1 (MQ=255)

      gtgtCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGa                                                                                    <  2:6266893/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 >  1:4699302/1‑93 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  2:3940164/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  1:3523500/93‑1 (MQ=255)

         tCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActg                                                                                 <  2:424838/93‑1 (MQ=255)

          cGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgc                                                                                >  1:371613/1‑93 (MQ=255)

            aGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgctg                                                                              <  2:2349840/93‑1 (MQ=255)

            aGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGActgctg                                                                              >  1:5390244/1‑93 (MQ=255)

               gcgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCa                                                                           <  1:1174537/93‑1 (MQ=255)

               gcgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCa                                                                           <  2:481234/93‑1 (MQ=255)

                cgcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAt                                                                          >  2:6029501/1‑93 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         >  1:3189508/1‑93 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         <  2:37147/93‑1 (MQ=255)

                 gcCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAtt                                                                         >  1:2232282/1‑93 (MQ=255)

                  ccTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTg                                                                        >  2:4466008/1‑93 (MQ=255)

                   cTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGa                                                                       >  2:4502902/1‑93 (MQ=255)

                   cTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGa                                                                       <  2:36449/93‑1 (MQ=255)

                    tttCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAg                                                                      >  2:4006576/1‑93 (MQ=255)

                     ttCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGc                                                                     <  1:1307691/93‑1 (MQ=255)

                      tCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCa                                                                    <  2:461483/93‑1 (MQ=255)

                        gCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACg                                                                  >  2:3861085/1‑93 (MQ=255)

                          tGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGcc                                                                >  2:3233448/1‑93 (MQ=255)

                           gaggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCg                                                               >  1:585727/1‑93 (MQ=255)

                            aggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGa                                                              >  1:2844630/1‑93 (MQ=255)

                             ggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             <  1:853132/93‑1 (MQ=255)

                             ggagAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             >  1:4343915/1‑93 (MQ=255)

                             agagaGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAg                                                             <  2:3358848/92‑1 (MQ=255)

                               agagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCa                                                           >  1:4927894/1‑93 (MQ=255)

                                gagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAg                                                          <  1:4027919/93‑1 (MQ=255)

                                gagTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAg                                                          <  1:3618332/93‑1 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       >  1:2603887/1‑93 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       <  2:3770371/93‑1 (MQ=255)

                                   tttGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGt                                                       >  1:5702742/1‑93 (MQ=255)

                                      gcgcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTc                                                    <  2:3399588/93‑1 (MQ=255)

                                      gcgcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTc                                                    >  1:3241224/1‑93 (MQ=255)

                                        gcTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCa                                                  <  1:1983046/93‑1 (MQ=255)

                                         cTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAg                                                 <  1:4649362/93‑1 (MQ=255)

                                          tCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGc                                                <  1:3897551/93‑1 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGcc                                               <  2:5663095/93‑1 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGcc                                               >  1:636172/1‑93 (MQ=255)

                                           cAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCAACCAGAGCAGGGTTTCCAGcc                                               >  2:4700827/1‑93 (MQ=255)

                                            aaGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGccc                                              >  2:3058877/1‑93 (MQ=255)

                                               cACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAc                                           >  1:1508612/1‑93 (MQ=255)

                                                aCCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcg                                          >  1:3357590/1‑93 (MQ=255)

                                                aCCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcg                                          >  1:4547039/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         <  2:100971/93‑1 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  2:3103652/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         <  1:3960470/93‑1 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  1:1850909/1‑93 (MQ=255)

                                                 ccATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgc                                         >  2:5894396/1‑93 (MQ=255)

                                                  cATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAcgcg                                        >  2:5808975/1‑93 (MQ=255)

                                                   aTCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACgcgc                                       <  2:5745517/93‑1 (MQ=255)

                                                    tCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCa                                      >  2:3384027/1‑93 (MQ=255)

                                                    tCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCa                                      >  2:2938324/1‑93 (MQ=255)

                                                     cAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGGCCGACGCGCAg                                     >  1:6166535/1‑93 (MQ=255)

                                                      aaGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAgg                                    >  1:5485776/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGGGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  <  2:5262021/93‑1 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:5572792/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  <  2:2008250/93‑1 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:1773737/1‑93 (MQ=255)

                                                        gCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGtt                                  >  1:4032980/1‑93 (MQ=255)

                                                          tGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTgg                                <  2:2219253/93‑1 (MQ=255)

                                                          tGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGCTgg                                >  1:3794434/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  1:3168695/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  2:3973635/1‑93 (MQ=255)

                                                             gtgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCtt                             >  1:4871107/1‑93 (MQ=255)

                                                              tgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTc                            <  1:3488917/93‑1 (MQ=255)

                                                              tgtgtAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTc                            <  1:4499731/93‑1 (MQ=255)

                                                                   aGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTAAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTAc                       <  2:4667393/93‑1 (MQ=255)

                                                                    gCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTAcc                      <  1:724168/93‑1 (MQ=255)

                                                                     cGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCg                     <  1:1967523/93‑1 (MQ=255)

                                                                      gggTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGc                    >  1:2699239/1‑93 (MQ=255)

                                                                        gTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑a                 >  1:2499668/1‑93 (MQ=255)

                                                                          tAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaa               >  1:5157050/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGTCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              <  1:1028897/93‑1 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:5423943/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:4052236/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:3005574/1‑93 (MQ=255)

                                                                           aaTTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑aaaa              >  1:2817987/1‑93 (MQ=255)

                                                                             ttCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAAc            <  2:5281459/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         >  2:874020/1‑93 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  2:5790430/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  2:1400459/93‑1 (MQ=255)

                                                                                ggCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGc         <  1:3473645/93‑1 (MQ=255)

                                                                                 gCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGcc        >  2:421154/1‑93 (MQ=255)

                                                                                 gCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGcc        >  1:5797323/1‑93 (MQ=255)

                                                                                  cGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCa       <  1:2703594/93‑1 (MQ=255)

                                                                                    tttAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGc     >  1:2853410/1‑93 (MQ=255)

                                                                                    tttAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGc     <  2:3324628/93‑1 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAAACCGCCAGCg    >  1:2960929/1‑93 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGt   >  1:2738506/1‑93 (MQ=255)

                                                                                      tAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGt   >  2:1709983/1‑93 (MQ=255)

CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTC  >  NC_000913/1191526‑1191705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGCCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAGC  >  NC_000913/1191523‑1191709

TTGCCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGT                                                                                                <  SRR4302533.5589786/94‑1 (MQ=60)

  GCCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCC                                                                                              >  SRR4302533.6242234/1‑94 (MQ=60)

  GCCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCC                                                                                              <  SRR4302533.5613375/94‑1 (MQ=60)

   GCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             <  SRR4302533.1037696/94‑1 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             <  SRR4302533.5012725/94‑1 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             <  SRR4302533.4759606/94‑1 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             <  SRR4302533.4744733/94‑1 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             <  SRR4302533.2837982/94‑1 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             >  SRR4302533.3135704/1‑94 (MQ=60)

   CCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCT                                                                                             >  SRR4302533.1293693/1‑94 (MQ=60)

     CAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGG                                                                                           <  SRR4302533.348461/94‑1 (MQ=60)

      AGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGC                                                                                          <  SRR4302533.1610172/94‑1 (MQ=60)

      AGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGC                                                                                          >  SRR4302533.3056580/1‑94 (MQ=60)

          TGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGTTTAATTCGGCGTTTAAGTCCTGGCGACT                                                                                      <  SRR4302533.3188996/94‑1 (MQ=60)

           GTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTG                                                                                     >  SRR4302533.4727792/1‑94 (MQ=60)

            TCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGC                                                                                    <  SRR4302533.3545216/94‑1 (MQ=60)

            TCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGC                                                                                    >  SRR4302533.373854/1‑94 (MQ=60)

             CGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCT                                                                                   <  SRR4302533.2258486/94‑1 (MQ=60)

              GAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTG                                                                                  >  SRR4302533.5422635/1‑94 (MQ=60)

                GCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGC                                                                                >  SRR4302533.2740959/1‑94 (MQ=60)

                  GCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCAT                                                                              <  SRR4302533.1181587/94‑1 (MQ=60)

                   CGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATT                                                                             >  SRR4302533.2932297/1‑94 (MQ=60)

                   CGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATT                                                                             >  SRR4302533.3209127/1‑94 (MQ=60)

                   CGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATT                                                                             >  SRR4302533.2246057/1‑94 (MQ=60)

                      CTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAG                                                                          >  SRR4302533.3535275/1‑94 (MQ=60)

                      CTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAG                                                                          >  SRR4302533.5629885/1‑94 (MQ=60)

                      CTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAG                                                                          <  SRR4302533.6204431/94‑1 (MQ=60)

                        TTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCA                                                                        >  SRR4302533.808563/1‑94 (MQ=60)

                        TTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCA                                                                        <  SRR4302533.1315543/94‑1 (MQ=60)

                         TCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCAC                                                                       <  SRR4302533.5742191/94‑1 (MQ=60)

                          CGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACG                                                                      >  SRR4302533.1432094/1‑94 (MQ=60)

                           GCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGC                                                                     <  SRR4302533.5216892/94‑1 (MQ=60)

                            CTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCC                                                                    >  SRR4302533.4541390/1‑94 (MQ=60)

                             TGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCG                                                                   <  SRR4302533.5471586/94‑1 (MQ=60)

                             TGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCG                                                                   >  SRR4302533.589180/1‑94 (MQ=60)

                              GAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGA                                                                  >  SRR4302533.2862134/1‑94 (MQ=60)

                               AGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAG                                                                 >  SRR4302533.4370093/1‑94 (MQ=60)

                                GGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGC                                                                <  SRR4302533.858126/94‑1 (MQ=60)

                                 GAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCA                                                               >  SRR4302533.4957737/1‑94 (MQ=60)

                                   GAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGG                                                             <  SRR4302533.4052437/94‑1 (MQ=60)

                                   GAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGG                                                             <  SRR4302533.3640587/94‑1 (MQ=60)

                                    AGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGG                                                            <  SRR4302533.5026430/94‑1 (MQ=60)

                                    AGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGG                                                            <  SRR4302533.4696755/94‑1 (MQ=60)

                                     GTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGT                                                           >  SRR4302533.2619883/1‑94 (MQ=60)

                                     GTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGT                                                           <  SRR4302533.5586353/94‑1 (MQ=60)

                                     GTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGT                                                           >  SRR4302533.354567/1‑94 (MQ=60)

                                     GTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGT                                                           >  SRR4302533.5737187/1‑94 (MQ=60)

                                      TTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTT                                                          >  SRR4302533.6279513/1‑94 (MQ=60)

                                        TGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTC                                                        >  SRR4302533.3261198/1‑94 (MQ=60)

                                          CGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCA                                                      >  SRR4302533.1766468/1‑94 (MQ=60)

                                          CGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCA                                                      >  SRR4302533.4997287/1‑94 (MQ=60)

                                          CGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCA                                                      <  SRR4302533.321359/94‑1 (MQ=60)

                                           GCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAG                                                     <  SRR4302533.1995184/94‑1 (MQ=60)

                                            CTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGC                                                    <  SRR4302533.4677531/94‑1 (MQ=60)

                                             TCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCC                                                   >  SRR4302533.639919/1‑94 (MQ=60)

                                             TCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCC                                                   <  SRR4302533.3921333/94‑1 (MQ=60)

                                               AAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCG                                                 >  SRR4302533.2203560/1‑94 (MQ=60)

                                                 GCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGAC                                               >  SRR4302533.1517708/1‑94 (MQ=60)

                                                  CACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACG                                              >  SRR4302533.4574575/1‑94 (MQ=60)

                                                  CACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACG                                              >  SRR4302533.3378338/1‑94 (MQ=60)

                                                   ACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGC                                             >  SRR4302533.1862195/1‑94 (MQ=60)

                                                    CCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCG                                            >  SRR4302533.3964828/1‑94 (MQ=60)

                                                    CCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCG                                            <  SRR4302533.3984601/94‑1 (MQ=60)

                                                      ATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCA                                          >  SRR4302533.4866194/1‑94 (MQ=60)

                                                       TCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGGCCGACGCGCAG                                         >  SRR4302533.6203596/1‑94 (MQ=60)

                                                       TCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAG                                         <  SRR4302533.6154077/94‑1 (MQ=60)

                                                        CAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGG                                        >  SRR4302533.5518841/1‑94 (MQ=60)

                                                         AAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGT                                       >  SRR4302533.2700121/1‑94 (MQ=60)

                                                          AGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTT                                      >  SRR4302533.1784540/1‑94 (MQ=60)

                                                          AGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTT                                      >  SRR4302533.5606471/1‑94 (MQ=60)

                                                          AGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTT                                      >  SRR4302533.4057530/1‑94 (MQ=60)

                                                           GCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTG                                     <  SRR4302533.3021739/94‑1 (MQ=60)

                                                            CTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGCTGG                                    >  SRR4302533.3817656/1‑94 (MQ=60)

                                                             TGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGC                                   >  SRR4302533.1062399/1‑94 (MQ=60)

                                                              GAGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCT                                  <  SRR4302533.4382107/94‑1 (MQ=60)

                                                               AGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTT                                 >  SRR4302533.4900627/1‑94 (MQ=60)

                                                               AGTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTT                                 >  SRR4302533.3188195/1‑94 (MQ=60)

                                                                GTGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTC                                <  SRR4302533.2804897/94‑1 (MQ=60)

                                                                 TGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCG                               >  SRR4302533.4104276/1‑94 (MQ=60)

                                                                 TGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCG                               <  SRR4302533.4526980/94‑1 (MQ=60)

                                                                 TGTGTAGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCG                               <  SRR4302533.3510435/94‑1 (MQ=60)

                                                                      AGCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACC                          <  SRR4302533.1860509/94‑1 (MQ=60)

                                                                       GCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCG                         >  SRR4302533.3329668/1‑94 (MQ=60)

                                                                       GCGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCG                         <  SRR4302533.728448/94‑1 (MQ=60)

                                                                        CGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGC                        <  SRR4302533.1979547/94‑1 (MQ=60)

                                                                        CGGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGC                        >  SRR4302533.2715796/1‑94 (MQ=60)

                                                                         GGGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC                       >  SRR4302533.2529509/1‑94 (MQ=60)

                                                                          GGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGCCGCGCAGGTTGGCTTCGCTACCGCC‑A                     <  SRR4302533.3069323/94‑1 (MQ=60)

                                                                          GGTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑A                     >  SRR4302533.2515088/1‑94 (MQ=60)

                                                                           GTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AA                    <  SRR4302533.3686989/94‑1 (MQ=60)

                                                                           GTTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AA                    <  SRR4302533.3907557/94‑1 (MQ=60)

                                                                            TTAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAA                   >  SRR4302533.5188185/1‑94 (MQ=60)

                                                                             TAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAA                  >  SRR4302533.5456609/1‑94 (MQ=60)

                                                                             TAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAA                  >  SRR4302533.4076914/1‑94 (MQ=60)

                                                                             TAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAA                  >  SRR4302533.2835331/1‑94 (MQ=60)

                                                                             TAATTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAA                  >  SRR4302533.3023959/1‑94 (MQ=60)

                                                                              AATTCGGCGTTTAAGTCCTGGCGACTGCTGTCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAA                 <  SRR4302533.1034940/94‑1 (MQ=60)

                                                                                TTCGGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGAGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACC               <  SRR4302533.912894/94‑1 (MQ=60)

                                                                                   GGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCC            <  SRR4302533.3495080/94‑1 (MQ=60)

                                                                                   GGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCC            >  SRR4302533.5832348/1‑94 (MQ=60)

                                                                                   GGCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCC            >  SRR4302533.4070371/1‑94 (MQ=60)

                                                                                    GCGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCA           <  SRR4302533.1888154/94‑1 (MQ=60)

                                                                                     CGTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAG          <  SRR4302533.2720178/94‑1 (MQ=60)

                                                                                      GTTTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGC         >  SRR4302533.2870965/1‑94 (MQ=60)

                                                                                        TTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAAACCGCCAGCG        >  SRR4302533.2979031/1‑94 (MQ=60)

                                                                                        TTAAGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGT       >  SRR4302533.2755300/1‑94 (MQ=60)

                                                                                          AAGTCCTGGCGCCTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCG     <  SRR4302533.4029559/94‑1 (MQ=60)

                                                                                           AGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGA    <  SRR4302533.5740926/94‑1 (MQ=60)

                                                                                           AGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGA    >  SRR4302533.1350219/1‑94 (MQ=60)

                                                                                           AGTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGA    <  SRR4302533.513252/94‑1 (MQ=60)

                                                                                            GTCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAG   <  SRR4302533.5884627/94‑1 (MQ=60)

                                                                                            GTCCTGGCGACTGCTGGAATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAG   >  SRR4302533.3905631/1‑94 (MQ=60)

                                                                                             TCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAGC  >  SRR4302533.3043776/1‑94 (MQ=60)

                                                                                             TCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAGC  <  SRR4302533.240837/94‑1 (MQ=60)

                                                                                             TCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAGC  >  SRR4302533.2216186/1‑94 (MQ=60)

TTGCCCAGAGTGTCGAGCGCGCCTTTCGCTGAGGAGAGTTTGCGCTCAAGCACCATCAAGCTGAGTGTGTAGCGGGTTAATTCGGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAGGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCC‑AAAAACCGCCAGCGTCGAGC  >  NC_000913/1191523‑1191709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`