Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,279,780 |
T→C |
W232R (TGG→CGG) |
narG → |
nitrate reductase 1 alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,279,780 | 0 | T | C | 100.0%
| 670.8
/ NA
| 208 | W232R (TGG→CGG) | narG | nitrate reductase 1 alpha subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (120/88); total (120/88) |
Only 100 of 215 total aligned reads displayed.
TCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGT > NC_000913/1279690‑1279869
|
tCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCgg < 1:5576885/93‑1 (MQ=255)
tCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCgg < 2:1131343/93‑1 (MQ=255)
ggTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGc < 2:3381907/93‑1 (MQ=255)
ggTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCATCCTGCGTCTCCGCAAACCCggggg > 1:1155713/1‑92 (MQ=255)
gTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCg < 2:2433147/93‑1 (MQ=255)
tGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGa < 1:463787/93‑1 (MQ=255)
aCGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCa > 2:2035036/1‑93 (MQ=255)
cTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAAc < 1:1745708/93‑1 (MQ=255)
cTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAAc < 2:3934880/93‑1 (MQ=255)
tATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACt > 1:1795095/1‑93 (MQ=255)
tATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACt > 2:2581916/1‑93 (MQ=255)
tATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACt < 2:2841258/93‑1 (MQ=255)
aTCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTg > 1:480883/1‑93 (MQ=255)
aTCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTAGTACTGCGACTTGCCTCCTGCGTCTCTGCAAACCCGGGGCGAGCAAACTg > 1:4446905/1‑93 (MQ=255)
tctctcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGa < 2:1986769/93‑1 (MQ=255)
tctctcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGa < 1:2277939/93‑1 (MQ=255)
tctctcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGa < 1:3932124/93‑1 (MQ=255)
ctctcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGAc < 2:62284/93‑1 (MQ=255)
ctctcGCTGATTGGCGGTACTTGCTCAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTgcc < 1:6088170/93‑3 (MQ=255)
tcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTa > 1:2492574/1‑93 (MQ=255)
tcGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTa > 2:2589309/1‑93 (MQ=255)
cGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTAc > 2:5911600/1‑93 (MQ=255)
gCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTAcc > 2:2309213/1‑93 (MQ=255)
tGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCgg > 2:3738181/1‑93 (MQ=255)
tGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCgg > 2:3623705/1‑93 (MQ=255)
aTTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGaa > 1:2079579/1‑93 (MQ=255)
ttGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAAt < 1:695837/93‑1 (MQ=255)
ttGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAAt > 2:1369383/1‑93 (MQ=255)
cGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATctgc < 2:3312405/93‑1 (MQ=255)
cGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATctgc < 1:1510931/93‑1 (MQ=255)
ggTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATctgct < 2:2132080/93‑1 (MQ=255)
gTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATctgctg > 2:1692657/1‑93 (MQ=255)
gTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATctgctg > 2:1011495/1‑93 (MQ=255)
tACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGa > 1:5425286/1‑93 (MQ=255)
aCTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGAc < 2:2210781/93‑1 (MQ=255)
ttGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTg < 2:5197438/93‑1 (MQ=255)
gCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGt < 2:2151930/93‑1 (MQ=255)
gCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGt < 2:896687/93‑1 (MQ=255)
cTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTa > 1:6214333/1‑93 (MQ=255)
ttAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTAc > 2:1733288/1‑93 (MQ=255)
ttAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTAc > 2:1258813/1‑93 (MQ=255)
ttAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTAc < 2:6081294/93‑1 (MQ=255)
tAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACa > 1:4564026/1‑93 (MQ=255)
tAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACa > 2:4088787/1‑93 (MQ=255)
aaGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACaa > 1:4944706/1‑93 (MQ=255)
aaGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACaa < 1:350081/93‑1 (MQ=255)
aGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAAc < 1:3980689/93‑1 (MQ=255)
gCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACt > 1:425623/1‑93 (MQ=255)
ttCTAGGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTcc < 2:5406049/93‑1 (MQ=255)
ttCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTcc > 1:459187/1‑93 (MQ=255)
tCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCa > 2:3986842/1‑93 (MQ=255)
cTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAg < 2:4874019/93‑1 (MQ=255)
gACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAc > 1:4083206/1‑93 (MQ=255)
gACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAc < 2:3832564/93‑1 (MQ=255)
aCTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAGCCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAca < 1:945505/93‑1 (MQ=255)
aCTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAca < 1:3678298/93‑1 (MQ=255)
aCTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAca < 1:3296092/93‑1 (MQ=255)
aCTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAca > 1:5243490/1‑93 (MQ=255)
cTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAcat < 1:5406239/93‑1 (MQ=255)
ggTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAcatca > 2:1060542/1‑93 (MQ=255)
gTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAcatcat > 2:207565/1‑93 (MQ=255)
tACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACatcatc > 2:3054946/1‑93 (MQ=255)
tACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACatcatc < 1:3098482/93‑1 (MQ=255)
tcTGCGACTTGCCTCATGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCg < 1:6300234/92‑1 (MQ=255)
tGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGcc > 1:4507518/1‑93 (MQ=255)
tGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGcc > 2:3421480/1‑93 (MQ=255)
tGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGcc < 1:1069105/93‑1 (MQ=255)
gCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCt > 1:5402609/1‑93 (MQ=255)
cGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTg < 1:5775541/93‑1 (MQ=255)
cGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTg < 1:4760031/93‑1 (MQ=255)
aCTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCTCCTggg < 2:5241293/93‑1 (MQ=255)
aCTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggg < 1:3399312/93‑1 (MQ=255)
aCTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggg > 2:6243249/1‑93 (MQ=255)
aCTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggg > 1:1333000/1‑93 (MQ=255)
cTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTgggg > 1:5172065/1‑93 (MQ=255)
ttGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggggg > 1:3658541/1‑93 (MQ=255)
ttGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggggg > 1:2938238/1‑93 (MQ=255)
ttGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTggggg < 2:1336858/93‑1 (MQ=255)
tGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGt > 1:2384096/1‑93 (MQ=255)
cctcctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCa < 2:3235464/93‑1 (MQ=255)
ctcctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCaa > 2:626185/1‑93 (MQ=255)
ctcctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCaa > 2:3014145/1‑93 (MQ=255)
tcctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCaaa > 2:4797585/1‑93 (MQ=255)
tcctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCaaa < 1:2192033/93‑1 (MQ=255)
tcctGCGTCTCCACAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCaaa > 1:2895541/1‑93 (MQ=255)
cctGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAAc > 1:313150/1‑93 (MQ=255)
tGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGt < 2:37765/93‑1 (MQ=255)
gCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTg < 2:4668715/93‑1 (MQ=255)
gCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGCGGGTCAAACGTg > 1:5984761/1‑93 (MQ=255)
cGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGc < 2:2667847/93‑1 (MQ=255)
tctcCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAGACGTGCCg > 1:5672519/1‑93 (MQ=255)
ctcCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGc > 1:1637791/1‑93 (MQ=255)
tgcGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCa < 1:5839808/91‑1 (MQ=255)
tcCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGGTACATCATCGCCTGGGGGTGAAACGTGCCGCa > 2:4431244/1‑93 (MQ=255)
tcCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCa < 2:5289841/93‑1 (MQ=255)
cGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGa < 1:6004087/93‑1 (MQ=255)
cGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGa > 2:3268674/1‑93 (MQ=255)
aaaCCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGAcgc > 2:1505551/1‑93 (MQ=255)
aaCCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGAcgcg > 1:2601029/1‑93 (MQ=255)
aCCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGt > 1:2236868/1‑93 (MQ=255)
|
TCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGT > NC_000913/1279690‑1279869
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTACCC > NC_000913/1279687‑1279873
|
GCATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCC > SRR4302533.4513481/1‑94 (MQ=60)
CATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCG < SRR4302533.2879873/94‑1 (MQ=60)
CATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCG < SRR4302533.2879874/94‑1 (MQ=60)
CATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCG < SRR4302533.4325533/94‑1 (MQ=60)
CATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCG > SRR4302533.6341702/1‑94 (MQ=60)
ATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGG > SRR4302533.314817/1‑94 (MQ=60)
TCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGG < SRR4302533.5610589/94‑1 (MQ=60)
GGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCATCCTGCGTCTCCGCAAACCCGGGGG > SRR4302533.1162645/1‑94 (MQ=60)
GGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCG > SRR4302533.2600795/1‑94 (MQ=60)
TGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAG < SRR4302533.4636420/94‑1 (MQ=60)
TGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAG > SRR4302533.5247829/1‑94 (MQ=60)
TGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAG < SRR4302533.466555/94‑1 (MQ=60)
TGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAG < SRR4302533.3205997/94‑1 (MQ=60)
TGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAG < SRR4302533.6343997/94‑1 (MQ=60)
CACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCC‑CAAAACCGGGGCGAGCAA > SRR4302533.4960652/1‑94 (MQ=60)
ACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAA < SRR4302533.4861514/94‑1 (MQ=60)
CGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAA > SRR4302533.6133342/1‑94 (MQ=60)
GCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAAC > SRR4302533.2376542/1‑94 (MQ=60)
CTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACT < SRR4302533.1756327/94‑1 (MQ=60)
CTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACT > SRR4302533.1806021/1‑94 (MQ=60)
TATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTG > SRR4302533.483758/1‑94 (MQ=60)
TATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTAGTACTGCGACTTGCCTCCTGCGTCTCTGCAAACCCGGGGCGAGCAAACTG > SRR4302533.4473800/1‑94 (MQ=60)
ATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGA > SRR4302533.2933050/1‑94 (MQ=60)
TCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGAC < SRR4302533.3956129/94‑1 (MQ=60)
TCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGAC < SRR4302533.2292045/94‑1 (MQ=60)
TCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGAC < SRR4302533.6250583/94‑1 (MQ=60)
CTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACG < SRR4302533.5822886/94‑1 (MQ=60)
CTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACG < SRR4302533.6028244/94‑1 (MQ=60)
CTCTCGCTGATTGGCGGTACTTGCTCAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGCCG < SRR4302533.6124973/94‑1 (MQ=60)
CTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTA > SRR4302533.5512659/1‑94 (MQ=60)
CTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTA > SRR4302533.2507928/1‑94 (MQ=60)
CGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACC > SRR4302533.2975180/1‑94 (MQ=60)
CTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGG < SRR4302533.5805726/94‑1 (MQ=60)
CTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGCACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAAATGACGTACCGG > SRR4302533.4237128/1‑94 (MQ=60)
GATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAA > SRR4302533.4548427/1‑94 (MQ=60)
GATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAA > SRR4302533.2092374/1‑94 (MQ=60)
TTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATC < SRR4302533.699951/94‑1 (MQ=60)
GGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTG < SRR4302533.1135191/94‑1 (MQ=60)
GCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGC < SRR4302533.176014/94‑1 (MQ=60)
CGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCT < SRR4302533.1520037/94‑1 (MQ=60)
CGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCT < SRR4302533.467900/94‑1 (MQ=60)
GGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTG > SRR4302533.4599456/1‑94 (MQ=60)
GTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGA > SRR4302533.5457960/1‑94 (MQ=60)
CTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTG > SRR4302533.171668/1‑94 (MQ=60)
TGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGT < SRR4302533.550865/94‑1 (MQ=60)
GCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTA > SRR4302533.6251598/1‑94 (MQ=60)
CTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTAC > SRR4302533.3618514/1‑94 (MQ=60)
TTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACA > SRR4302533.4591700/1‑94 (MQ=60)
TTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACA > SRR4302533.5298898/1‑94 (MQ=60)
TAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAA > SRR4302533.4974634/1‑94 (MQ=60)
AAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAAC < SRR4302533.352214/94‑1 (MQ=60)
AGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACT < SRR4302533.4004925/94‑1 (MQ=60)
AGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACT > SRR4302533.428161/1‑94 (MQ=60)
CTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCC > SRR4302533.461929/1‑94 (MQ=60)
CTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCC > SRR4302533.4507894/1‑94 (MQ=60)
TCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAG > SRR4302533.5446809/1‑94 (MQ=60)
CTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGC > SRR4302533.443152/1‑94 (MQ=60)
CTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGC > SRR4302533.981189/1‑94 (MQ=60)
ACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTA < SRR4302533.2782264/94‑1 (MQ=60)
ACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTA > SRR4302533.765292/1‑94 (MQ=60)
CGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAC > SRR4302533.4108061/1‑94 (MQ=60)
CGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTAC > SRR4302533.6311074/1‑94 (MQ=60)
GACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACA > SRR4302533.5971282/1‑94 (MQ=60)
GACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACA > SRR4302533.5275007/1‑94 (MQ=60)
GACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACA > SRR4302533.3402166/1‑94 (MQ=60)
ACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAGCCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACAT < SRR4302533.951065/94‑1 (MQ=60)
ACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACAT > SRR4302533.4082215/1‑94 (MQ=60)
ACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACAT < SRR4302533.3978700/94‑1 (MQ=60)
ACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACAT < SRR4302533.3700908/94‑1 (MQ=60)
ACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACAT < SRR4302533.3316437/94‑1 (MQ=60)
CTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATC < SRR4302533.5438724/94‑1 (MQ=60)
CTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATC < SRR4302533.3460383/94‑1 (MQ=60)
TGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCA < SRR4302533.1268204/94‑1 (MQ=60)
TACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCG < SRR4302533.3117532/94‑1 (MQ=60)
TACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCG < SRR4302533.4804905/94‑1 (MQ=60)
TCTGCGACTTGCCTCATGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGC < SRR4302533.6337855/94‑1 (MQ=60)
ACTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGC > SRR4302533.3695518/1‑94 (MQ=60)
CTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCC > SRR4302533.5612891/1‑94 (MQ=60)
CTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCC > SRR4302533.2279908/1‑94 (MQ=60)
CTGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCC > SRR4302533.4534818/1‑94 (MQ=60)
TGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCT < SRR4302533.1075399/94‑1 (MQ=60)
TGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCT > SRR4302533.387119/1‑94 (MQ=60)
TGCGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCT > SRR4302533.5435073/1‑94 (MQ=60)
CGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGG < SRR4302533.4788908/94‑1 (MQ=60)
CGACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGG < SRR4302533.5810422/94‑1 (MQ=60)
GACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGG > SRR4302533.1341000/1‑94 (MQ=60)
ACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGG > SRR4302533.5203274/1‑94 (MQ=60)
ACTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGG < SRR4302533.3420302/94‑1 (MQ=60)
CTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGG > SRR4302533.2956193/1‑94 (MQ=60)
CTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGG > SRR4302533.3681036/1‑94 (MQ=60)
CTTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGG > SRR4302533.1607038/1‑94 (MQ=60)
TTGCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGT > SRR4302533.2398833/1‑94 (MQ=60)
GCCTCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCA < SRR4302533.517487/94‑1 (MQ=60)
CTCCTGCGTCTCCGCAAACCCGGGGCGCGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAA > SRR4302533.1397003/1‑94 (MQ=60)
CTCCTGCGTCTCCACAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAA > SRR4302533.2913347/1‑94 (MQ=60)
TCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAAC < SRR4302533.2205542/94‑1 (MQ=60)
TCCTGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAAC > SRR4302533.315061/1‑94 (MQ=60)
TGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTG < SRR4302533.2171641/94‑1 (MQ=60)
TGCGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGCGGGTCAAACGTG > SRR4302533.6021007/1‑94 (MQ=60)
CGTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCC > SRR4302533.271250/1‑94 (MQ=60)
GTCTCCGCAAACCCGGTGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGTTCAAACGTGCCG < SRR4302533.2016913/94‑1 (MQ=60)
GTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAGACGTGCCG > SRR4302533.5706779/1‑94 (MQ=60)
GTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCG > SRR4302533.2212063/1‑94 (MQ=60)
GTCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCG < SRR4302533.1882956/94‑1 (MQ=60)
TCTCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGC > SRR4302533.1647707/1‑94 (MQ=60)
TGCGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAG < SRR4302533.5875116/94‑1 (MQ=60)
TCCGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAG < SRR4302533.3435014/94‑1 (MQ=60)
CGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGAC < SRR4302533.4373562/94‑1 (MQ=60)
CGCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGAC < SRR4302533.6040465/94‑1 (MQ=60)
GCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACG < SRR4302533.5435482/94‑1 (MQ=60)
GCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACG > SRR4302533.6070084/1‑94 (MQ=60)
GCAAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACG > SRR4302533.2416492/1‑94 (MQ=60)
AAACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCG > SRR4302533.2617010/1‑94 (MQ=60)
AACCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGT > SRR4302533.2250696/1‑94 (MQ=60)
CCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTAC > SRR4302533.2055630/1‑94 (MQ=60)
CCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTAC > SRR4302533.3108229/1‑94 (MQ=60)
CCCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTAC > SRR4302533.1130193/1‑94 (MQ=60)
CCGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGAGCCGCAGACGCGTACC > SRR4302533.6034219/1‑94 (MQ=60)
CGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTACCC > SRR4302533.1631819/1‑94 (MQ=60)
CGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTACCC < SRR4302533.3618829/94‑1 (MQ=60)
|
GCATCGGGTGCACGCTATCTCTCGCTGATTGGCGGTACTTGCTTAAGCTTCTACGACTGGTACTGCGACTTGCCTCCTGCGTCTCCGCAAACCTGGGGCGAGCAAACTGACGTACCGGAATCTGCTGACTGGTACAACTCCAGCTACATCATCGCCTGGGGGTCAAACGTGCCGCAGACGCGTACCC > NC_000913/1279687‑1279873
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
