Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,293,354 |
A→G |
H202R (CAT→CGT) |
tdk → |
thymidine kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,293,354 | 0 | A | G | 100.0%
| 777.5
/ NA
| 239 | H202R (CAT→CGT) | tdk | thymidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/123); total (116/123) |
Only 100 of 246 total aligned reads displayed.
TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT > NC_000913/1293264‑1293442
|
ttGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTc < 2:3901758/93‑1 (MQ=255)
ttGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTc > 2:2898316/1‑93 (MQ=255)
ttGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTc > 1:2206984/1‑93 (MQ=255)
tggtggTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCg < 2:143693/93‑1 (MQ=255)
ggtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGc < 2:3805438/93‑1 (MQ=255)
gtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGcc > 2:2361095/1‑93 (MQ=255)
tggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTATCGGCTATTCAGGAAAGGCGTCGCCa > 2:6296436/1‑93 (MQ=255)
tggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGccc > 1:3410244/1‑92 (MQ=255)
ggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCAc > 1:2067113/1‑93 (MQ=255)
tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa > 1:5662059/1‑93 (MQ=255)
tAATGAACGATACGTTTCTGTATGCCATAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACgg < 1:5942714/93‑2 (MQ=255)
aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt > 1:1245709/1‑93 (MQ=255)
aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt < 1:3347190/93‑1 (MQ=255)
aTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAtt < 1:3688737/93‑1 (MQ=255)
aCGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaata < 1:6262454/93‑1 (MQ=255)
cGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaataa < 1:2974865/93‑1 (MQ=255)
cGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaataa > 2:4053121/1‑93 (MQ=255)
aTACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGTCACGATTAATAAGa > 1:6177959/1‑93 (MQ=255)
aTACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGa > 2:875240/1‑93 (MQ=255)
tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa > 1:181713/1‑93 (MQ=255)
tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa > 2:5116009/1‑93 (MQ=255)
gTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAttt < 1:3162139/93‑1 (MQ=255)
tttCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTc < 2:1457257/93‑1 (MQ=255)
tttCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTc < 2:2307166/93‑1 (MQ=255)
tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt > 2:2552354/1‑93 (MQ=255)
tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt < 2:1019758/93‑1 (MQ=255)
tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt < 2:3379869/93‑1 (MQ=255)
tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt > 2:1323117/1‑93 (MQ=255)
cTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCttt > 2:720617/1‑93 (MQ=255)
cTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCttt < 2:6057957/93‑1 (MQ=255)
cTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCttt < 2:520310/93‑1 (MQ=255)
tGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTACCGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTa < 2:2208495/93‑1 (MQ=255)
tGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTa > 2:3629143/1‑93 (MQ=255)
gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc > 2:4031293/1‑93 (MQ=255)
tATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACt > 1:5196089/1‑93 (MQ=255)
tATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACt > 2:2052718/1‑93 (MQ=255)
tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa > 2:5930482/1‑93 (MQ=255)
tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa > 1:1591419/1‑93 (MQ=255)
gCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAc < 1:1490246/93‑1 (MQ=255)
ccGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACa < 2:4960205/93‑1 (MQ=255)
ccGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACa < 1:3136508/93‑1 (MQ=255)
cGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAg > 2:2815831/1‑93 (MQ=255)
gTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAgg > 1:4947931/1‑93 (MQ=255)
tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg > 2:5356684/1‑93 (MQ=255)
tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg > 2:3167286/1‑93 (MQ=255)
aaaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGt < 1:4227902/93‑1 (MQ=255)
aaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTg < 1:353445/93‑1 (MQ=255)
acacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGa > 1:809201/1‑93 (MQ=255)
cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAg < 2:3067163/93‑1 (MQ=255)
tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg < 2:5682567/93‑1 (MQ=255)
tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg > 2:1218881/1‑93 (MQ=255)
tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg < 1:2559984/93‑1 (MQ=255)
ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg < 1:1728130/93‑1 (MQ=255)
ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg > 1:750993/1‑93 (MQ=255)
ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg > 2:2949259/1‑93 (MQ=255)
aaGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCa < 1:2114356/93‑1 (MQ=255)
gagGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACt > 2:1591445/1‑93 (MQ=255)
gagGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACt > 1:5748165/1‑93 (MQ=255)
ggCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACttt < 1:1187120/93‑1 (MQ=255)
gCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACtttt > 2:5789501/1‑93 (MQ=255)
cGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTa > 2:1392064/1‑93 (MQ=255)
gTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAt > 1:678925/1‑93 (MQ=255)
ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc > 1:1016950/1‑93 (MQ=255)
ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc > 1:2322962/1‑93 (MQ=255)
cAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTg < 2:576307/93‑1 (MQ=255)
aaGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGt > 1:5084085/1‑93 (MQ=255)
aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc < 2:1128795/93‑1 (MQ=255)
aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc < 1:3966810/93‑1 (MQ=255)
aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc < 1:3297740/93‑1 (MQ=255)
gTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCa > 2:3994117/1‑93 (MQ=255)
gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt < 1:1345315/93‑1 (MQ=255)
gACTCATAAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt < 1:2545374/93‑1 (MQ=255)
aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc > 1:5548227/1‑93 (MQ=255)
aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc < 2:6115620/93‑1 (MQ=255)
aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc > 1:2816495/1‑93 (MQ=255)
cTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCg > 2:4090466/1‑93 (MQ=255)
aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt < 2:6090367/93‑1 (MQ=255)
aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt < 2:774195/93‑1 (MQ=255)
aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt < 1:4522980/93‑1 (MQ=255)
aaCGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTAc < 1:2351857/93‑1 (MQ=255)
ggCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGcc > 2:4285347/1‑92 (MQ=255)
cTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAct < 2:56461/93‑1 (MQ=255)
aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc < 2:4464176/93‑1 (MQ=255)
aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc > 2:4638359/1‑93 (MQ=255)
aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc < 1:4383031/93‑1 (MQ=255)
aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc > 1:640677/1‑93 (MQ=255)
aTTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtc > 2:5550268/1‑93 (MQ=255)
ttCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtct > 1:5464319/1‑93 (MQ=255)
tCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtctt < 2:1856767/93‑1 (MQ=255)
tCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtctt < 2:5513153/93‑1 (MQ=255)
tCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtctt > 1:373689/1‑93 (MQ=255)
cAGGGAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc < 1:3749424/93‑1 (MQ=255)
aGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTcc > 2:2455480/1‑93 (MQ=255)
ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg < 1:1363554/93‑1 (MQ=255)
ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg > 2:4578080/1‑93 (MQ=255)
gAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCgg > 1:5307094/1‑93 (MQ=255)
aaGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGc > 1:5553519/1‑93 (MQ=255)
aaGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGc > 2:2670471/1‑93 (MQ=255)
aGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCt < 2:3112019/93‑1 (MQ=255)
aGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCt > 1:4741493/1‑93 (MQ=255)
|
TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT > NC_000913/1293264‑1293442
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT > NC_000913/1293261‑1293446
|
TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCG < SRR4302533.2852570/94‑1 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC < SRR4302533.1113959/94‑1 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC < SRR4302533.2413784/94‑1 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC > SRR4302533.2220592/1‑94 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC < SRR4302533.3086530/94‑1 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC < SRR4302533.1914924/94‑1 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC > SRR4302533.376993/1‑94 (MQ=60)
ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC > SRR4302533.3848376/1‑94 (MQ=60)
GGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCC < SRR4302533.325771/94‑1 (MQ=60)
GTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCC > SRR4302533.3431308/1‑94 (MQ=60)
GTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCA > SRR4302533.2377226/1‑94 (MQ=60)
TGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCAC > SRR4302533.2079849/1‑94 (MQ=60)
GGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACG < SRR4302533.5530912/94‑1 (MQ=60)
GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA < SRR4302533.4514059/94‑1 (MQ=60)
GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA > SRR4302533.5696269/1‑94 (MQ=60)
TAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAT > SRR4302533.1253145/1‑94 (MQ=60)
TAATGAACGATACGTTTCTGTATGCCATAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGGT < SRR4302533.5978653/94‑1 (MQ=60)
AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT < SRR4302533.3367871/94‑1 (MQ=60)
AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT > SRR4302533.753692/1‑94 (MQ=60)
ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA < SRR4302533.3711404/94‑1 (MQ=60)
ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA > SRR4302533.4726897/1‑94 (MQ=60)
TGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAA < SRR4302533.5924706/94‑1 (MQ=60)
GAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAAT > SRR4302533.3727127/1‑94 (MQ=60)
ACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAA < SRR4302533.6299890/94‑1 (MQ=60)
CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG > SRR4302533.351487/1‑94 (MQ=60)
CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG > SRR4302533.3175905/1‑94 (MQ=60)
CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG > SRR4302533.1210404/1‑94 (MQ=60)
CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG < SRR4302533.2993067/94‑1 (MQ=60)
GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGTCACGATTAATAAGA > SRR4302533.6215070/1‑94 (MQ=60)
GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGA > SRR4302533.5050788/1‑94 (MQ=60)
ATACGTTTCTGTATGCCGTAAACTCTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAA < SRR4302533.705644/94‑1 (MQ=60)
ATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAA > SRR4302533.182844/1‑94 (MQ=60)
TACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAT < SRR4302533.883248/94‑1 (MQ=60)
ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT < SRR4302533.5766032/94‑1 (MQ=60)
ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT < SRR4302533.658535/94‑1 (MQ=60)
GTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTC < SRR4302533.3181600/94‑1 (MQ=60)
GTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTC > SRR4302533.6305127/1‑94 (MQ=60)
TTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCT < SRR4302533.168256/94‑1 (MQ=60)
CTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTA > SRR4302533.1944141/1‑94 (MQ=60)
CTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTA < SRR4302533.1114918/94‑1 (MQ=60)
TGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAC > SRR4302533.2737913/1‑94 (MQ=60)
GTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACT < SRR4302533.5721431/94‑1 (MQ=60)
GTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACT > SRR4302533.5227426/1‑94 (MQ=60)
ATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGA > SRR4302533.1601045/1‑94 (MQ=60)
ATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGA > SRR4302533.5190166/1‑94 (MQ=60)
TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTTGTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC > SRR4302533.6343584/1‑94 (MQ=60)
TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGACTTTCTTTACTGAC < SRR4302533.3425386/94‑1 (MQ=60)
TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC < SRR4302533.3208999/94‑1 (MQ=60)
GCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACA < SRR4302533.1499233/94‑1 (MQ=60)
CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG < SRR4302533.76328/94‑1 (MQ=60)
CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG > SRR4302533.5091057/1‑94 (MQ=60)
CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG < SRR4302533.3155795/94‑1 (MQ=60)
CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG < SRR4302533.845863/94‑1 (MQ=60)
CGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGG > SRR4302533.4977892/1‑94 (MQ=60)
GTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGG < SRR4302533.1462770/94‑1 (MQ=60)
TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGCTTAATAAGAATTTCTTTACTGACAGGGT > SRR4302533.3034573/1‑94 (MQ=60)
TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGT > SRR4302533.426137/1‑94 (MQ=60)
TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGT > SRR4302533.234044/1‑94 (MQ=60)
AAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTG < SRR4302533.4253464/94‑1 (MQ=60)
AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA < SRR4302533.355602/94‑1 (MQ=60)
AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA < SRR4302533.545468/94‑1 (MQ=60)
AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA > SRR4302533.813951/1‑94 (MQ=60)
ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCA < SRR4302533.1331384/94‑1 (MQ=60)
ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCA < SRR4302533.4715117/94‑1 (MQ=60)
TATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGG > SRR4302533.755416/1‑94 (MQ=60)
TATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGG < SRR4302533.2575752/94‑1 (MQ=60)
ATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGG > SRR4302533.4043535/1‑94 (MQ=60)
ATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGG < SRR4302533.1738614/94‑1 (MQ=60)
AAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCAC < SRR4302533.2127394/94‑1 (MQ=60)
AGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACT > SRR4302533.5782842/1‑94 (MQ=60)
GAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTT < SRR4302533.256163/94‑1 (MQ=60)
GGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTT < SRR4302533.6282774/94‑1 (MQ=60)
GGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTT < SRR4302533.1194244/94‑1 (MQ=60)
CGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAT > SRR4302533.682938/1‑94 (MQ=60)
GTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATC > SRR4302533.3615925/1‑94 (MQ=60)
GTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATC > SRR4302533.2337339/1‑94 (MQ=60)
GTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATC > SRR4302533.1022928/1‑94 (MQ=60)
TTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCC < SRR4302533.1794898/94‑1 (MQ=60)
TACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCT < SRR4302533.1269288/94‑1 (MQ=60)
CAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGT > SRR4302533.5114810/1‑94 (MQ=60)
AGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCA < SRR4302533.3990974/94‑1 (MQ=60)
AGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCA < SRR4302533.3318093/94‑1 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC > SRR4302533.5581734/1‑94 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC < SRR4302533.5651274/94‑1 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC > SRR4302533.2833834/1‑94 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC > SRR4302533.2190157/1‑94 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC < SRR4302533.1353409/94‑1 (MQ=60)
GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTACTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC < SRR4302533.3410463/94‑1 (MQ=60)
GACTCATAAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC < SRR4302533.2561035/94‑1 (MQ=60)
ACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCG > SRR4302533.5241608/1‑94 (MQ=60)
TCATTAACGGCTATACAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTT > SRR4302533.1664820/1‑94 (MQ=60)
CATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTT > SRR4302533.4924520/1‑94 (MQ=60)
ATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTT > SRR4302533.2988262/1‑94 (MQ=60)
ATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTT < SRR4302533.4550360/94‑1 (MQ=60)
TAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTAC < SRR4302533.6027255/94‑1 (MQ=60)
AACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACG < SRR4302533.2366406/94‑1 (MQ=60)
GGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAC < SRR4302533.6056098/94‑1 (MQ=60)
GCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACT < SRR4302533.155001/94‑1 (MQ=60)
TATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTC > SRR4302533.1459696/1‑94 (MQ=60)
TATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTC < SRR4302533.2451124/94‑1 (MQ=60)
TATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTC > SRR4302533.2636087/1‑94 (MQ=60)
TATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTC < SRR4302533.3360391/94‑1 (MQ=60)
TATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTC > SRR4302533.644444/1‑94 (MQ=60)
ATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCT > SRR4302533.5497248/1‑94 (MQ=60)
ATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCT < SRR4302533.4409491/94‑1 (MQ=60)
TTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTT > SRR4302533.375947/1‑94 (MQ=60)
TCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTC < SRR4302533.3808698/94‑1 (MQ=60)
TCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTC < SRR4302533.2206902/94‑1 (MQ=60)
TCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTC < SRR4302533.5530036/94‑1 (MQ=60)
CAGGGAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCC < SRR4302533.3772408/94‑1 (MQ=60)
CAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCC < SRR4302533.4296578/94‑1 (MQ=60)
CAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCC < SRR4302533.2321061/94‑1 (MQ=60)
AGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCG < SRR4302533.1367939/94‑1 (MQ=60)
GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG < SRR4302533.3580283/94‑1 (MQ=60)
GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG < SRR4302533.1371746/94‑1 (MQ=60)
GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG < SRR4302533.3118571/94‑1 (MQ=60)
GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG > SRR4302533.5338900/1‑94 (MQ=60)
GAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGG < SRR4302533.1863029/94‑1 (MQ=60)
AAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGC > SRR4302533.5587056/1‑94 (MQ=60)
AAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGC > SRR4302533.5587055/1‑94 (MQ=60)
AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT > SRR4302533.4770240/1‑94 (MQ=60)
AGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA < SRR4302533.5265868/94‑1 (MQ=60)
AGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA < SRR4302533.2083338/94‑1 (MQ=60)
GGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTAT > SRR4302533.3621021/1‑94 (MQ=60)
CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT < SRR4302533.1676071/94‑1 (MQ=60)
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TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT > NC_000913/1293261‑1293446
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
