Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,293,354	A→G	H202R (CAT→CGT)	tdk →	thymidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,293,354	0	A	G	99.7%	1145.8 / NA	357	H202R (CAT→CGT)	tdk	thymidine kinase
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (171/184); total (171/186)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 362 total aligned reads displayed.

TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA  >  NC_000913/1293264‑1293443

ttGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTc                                                                                         >  2:6905599/1‑93 (MQ=255)

  ggtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGc                                                                                       >  1:6273519/1‑93 (MQ=255)

  ggtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGc                                                                                       >  2:7166269/1‑93 (MQ=255)

  ggtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGc                                                                                       <  1:3307781/93‑1 (MQ=255)

   gtggtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGcc                                                                                      <  2:7677379/93‑1 (MQ=255)

      gtAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACg                                                                                   >  1:2177207/1‑93 (MQ=255)

       tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa                                                                                  <  2:2545211/93‑1 (MQ=255)

       tAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGa                                                                                  >  2:539254/1‑93 (MQ=255)

        aaTGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAt                                                                                 >  1:4825547/1‑93 (MQ=255)

          tGAACGATACGTTTCTGTATGCCGTACACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATta                                                                               >  1:125/1‑93 (MQ=255)

          tGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATta                                                                               >  1:6454312/1‑93 (MQ=255)

          tGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATta                                                                               <  2:918689/93‑1 (MQ=255)

            aaCGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaat                                                                             <  2:8044530/93‑1 (MQ=255)

            aaCGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaat                                                                             >  2:6413851/1‑93 (MQ=255)

            aaCGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaat                                                                             <  1:4673363/93‑1 (MQ=255)

              cGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATtaataa                                                                           >  1:8206456/1‑93 (MQ=255)

               gATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAg                                                                          <  1:2972210/93‑1 (MQ=255)

               gATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAg                                                                          <  1:9913034/93‑1 (MQ=255)

                 tACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGaa                                                                        >  1:9173019/1‑93 (MQ=255)

                  aCGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAt                                                                       >  1:3397803/1‑93 (MQ=255)

                   cGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAtt                                                                      <  2:4154375/93‑1 (MQ=255)

                     tttCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTc                                                                    <  1:4336269/93‑1 (MQ=255)

                     tttCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTc                                                                    >  2:4944303/1‑93 (MQ=255)

                       tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt                                                                  >  2:7547984/1‑93 (MQ=255)

                       tCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt                                                                  <  1:8105970/93‑1 (MQ=255)

                       tCTGCATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGGCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCtt                                                                  >  2:5653941/1‑93 (MQ=255)

                        cTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCttt                                                                 >  2:794516/1‑93 (MQ=255)

                          gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc                                                               >  2:7013053/1‑93 (MQ=255)

                          gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc                                                               >  2:1911927/1‑93 (MQ=255)

                          gTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAc                                                               >  2:4008069/1‑93 (MQ=255)

                             tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa                                                            <  1:952973/93‑1 (MQ=255)

                             tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa                                                            >  1:8154737/1‑93 (MQ=255)

                             tGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGa                                                            <  1:2283606/93‑1 (MQ=255)

                              gCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAc                                                           <  2:9407469/93‑1 (MQ=255)

                               ccGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACa                                                          <  1:7632760/93‑1 (MQ=255)

                                cGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAg                                                         <  2:6289420/93‑1 (MQ=255)

                                 gTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAgg                                                        >  2:3239871/1‑93 (MQ=255)

                                  tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg                                                       >  1:8299501/1‑93 (MQ=255)

                                  tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg                                                       <  1:2057965/93‑1 (MQ=255)

                                  tAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg                                                       >  2:5804835/1‑93 (MQ=255)

                                  gaaaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAggg                                                       <  1:1452096/92‑1 (MQ=255)

                                   aaaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAgggg                                                      >  1:1034719/1‑92 (MQ=255)

                                   aaaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGt                                                      <  1:419165/93‑1 (MQ=255)

                                    aaCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTg                                                     <  1:5473136/93‑1 (MQ=255)

                                     acacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGa                                                    <  2:7241472/93‑1 (MQ=255)

                                      cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAg                                                   >  2:3875905/1‑93 (MQ=255)

                                      cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAg                                                   >  1:3930008/1‑93 (MQ=255)

                                      cacTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAg                                                   >  1:4540473/1‑93 (MQ=255)

                                       acTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGc                                                  >  1:7998907/1‑93 (MQ=255)

                                       acTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGc                                                  >  2:2360002/1‑93 (MQ=255)

                                         tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg                                                >  1:445332/1‑93 (MQ=255)

                                         tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg                                                <  2:8343687/93‑1 (MQ=255)

                                         tataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAg                                                >  1:856588/1‑93 (MQ=255)

                                          ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg                                               <  2:2707483/93‑1 (MQ=255)

                                          ataAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAgg                                               >  2:8750455/1‑93 (MQ=255)

                                           taAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAggg                                              >  1:4384253/1‑93 (MQ=255)

                                             aaGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCa                                            >  1:7751492/1‑93 (MQ=255)

                                             aaGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCa                                            >  2:2264036/1‑93 (MQ=255)

                                             aaGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCa                                            >  1:6804098/1‑93 (MQ=255)

                                                   cGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTa                                      <  1:4855021/93‑1 (MQ=255)

                                                     ttACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATc                                    >  2:1371507/1‑93 (MQ=255)

                                                      tACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATcc                                   <  2:4692449/93‑1 (MQ=255)

                                                        cAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTg                                 >  2:3059919/1‑93 (MQ=255)

                                                         aaGTCGACTCATTAACGACTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGt                                <  1:8972705/93‑1 (MQ=255)

                                                          aGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTc                               >  2:9048041/1‑93 (MQ=255)

                                                           gTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCa                              <  2:4437250/93‑1 (MQ=255)

                                                           gTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCa                              >  2:9852008/1‑93 (MQ=255)

                                                           gTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCa                              <  1:7298323/93‑1 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           <  1:1348566/93‑1 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           <  1:6163949/93‑1 (MQ=255)

                                                              gACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGtt                           >  2:5898086/1‑93 (MQ=255)

                                                               aCTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTc                          >  1:10042135/1‑93 (MQ=255)

                                                                cTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCg                         >  1:9665235/1‑93 (MQ=255)

                                                                  cATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGtt                       <  1:3106665/93‑1 (MQ=255)

                                                                   aTTAACGGCTATTCAGGAAAGGCTTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt                      <  2:5535152/93‑1 (MQ=255)

                                                                   aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt                      <  2:2864631/93‑1 (MQ=255)

                                                                   aTTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGttt                      >  1:1942193/1‑93 (MQ=255)

                                                                    ttAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGtttt                     >  1:7001614/1‑93 (MQ=255)

                                                                    ttAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGtttt                     <  2:6527869/93‑1 (MQ=255)

                                                                      aaCGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTAc                   <  2:5294420/93‑1 (MQ=255)

                                                                         ggCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCa                <  2:664200/93‑1 (MQ=255)

                                                                          gCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGccc               <  1:8373888/93‑3 (MQ=255)

                                                                          gCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAc               >  1:6729662/1‑93 (MQ=255)

                                                                           cTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGCCAGTTCGTTTTACGCAct              >  2:8851235/1‑93 (MQ=255)

                                                                           cTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGCGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAct              >  1:9139306/1‑93 (MQ=255)

                                                                              ttCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtct           >  1:2536312/1‑93 (MQ=255)

                                                                               tCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCActtctt          >  1:4946825/1‑93 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  2:3448526/93‑1 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  2:2096993/93‑1 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  1:1538877/93‑1 (MQ=255)

                                                                                cAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACttcttc         <  2:5198995/93‑1 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       <  1:5714809/93‑1 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       >  1:3659272/1‑93 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       <  1:6584343/93‑1 (MQ=255)

                                                                                  ggAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCg       >  1:8467181/1‑93 (MQ=255)

                                                                                   gAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCgg      <  2:1706738/93‑1 (MQ=255)

                                                                                    aaaGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCggg     <  1:7154256/93‑1 (MQ=255)

                                                                                     aaGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCgggt    >  2:6847145/1‑92 (MQ=255)

                                                                                     aaGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGc    <  1:1726019/93‑1 (MQ=255)

                                                                                      aGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCt   >  1:1926234/1‑93 (MQ=255)

TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTA  >  NC_000913/1293264‑1293443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 210 total aligned reads displayed.

TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATA  >  NC_000913/1293261‑1293447

TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCG                                                                                               >  SRR4302540.4169664/1‑94 (MQ=60)

  ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC                                                                                             >  SRR4302540.6703716/1‑94 (MQ=60)

  ATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTC                                                                                             <  SRR4302540.3308841/94‑1 (MQ=60)

   TTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCG                                                                                            <  SRR4302540.220046/94‑1 (MQ=60)

    TGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGC                                                                                           >  SRR4302540.6343316/1‑94 (MQ=60)

    TGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGC                                                                                           >  SRR4302540.47609/1‑94 (MQ=60)

     GGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCC                                                                                          <  SRR4302540.3344017/94‑1 (MQ=60)

     GGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCC                                                                                          >  SRR4302540.1861451/1‑94 (MQ=60)

      GTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCA                                                                                         <  SRR4302540.1946229/94‑1 (MQ=60)

      GTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCA                                                                                         <  SRR4302540.4570953/94‑1 (MQ=60)

       TGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCAC                                                                                        <  SRR4302540.7851165/94‑1 (MQ=60)

        GGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACG                                                                                       >  SRR4302540.2200690/1‑94 (MQ=60)

        GGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACG                                                                                       >  SRR4302540.3223656/1‑94 (MQ=60)

        GGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACG                                                                                       <  SRR4302540.6043346/94‑1 (MQ=60)

         GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA                                                                                      >  SRR4302540.6833351/1‑94 (MQ=60)

         GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA                                                                                      >  SRR4302540.8095129/1‑94 (MQ=60)

         GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA                                                                                      >  SRR4302540.8095128/1‑94 (MQ=60)

         GTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGA                                                                                      >  SRR4302540.3736286/1‑94 (MQ=60)

          TAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAT                                                                                     >  SRR4302540.4877226/1‑94 (MQ=60)

          TAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGAT                                                                                     >  SRR4302540.4430572/1‑94 (MQ=60)

           AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT                                                                                    <  SRR4302540.1192403/94‑1 (MQ=60)

           AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT                                                                                    >  SRR4302540.3201736/1‑94 (MQ=60)

           AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT                                                                                    <  SRR4302540.7975978/94‑1 (MQ=60)

           AATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATT                                                                                    >  SRR4302540.8650294/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTACACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   >  SRR4302540.126/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   >  SRR4302540.6353459/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   >  SRR4302540.6526154/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   >  SRR4302540.127/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   >  SRR4302540.2073537/1‑94 (MQ=60)

            ATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTA                                                                                   <  SRR4302540.2631267/94‑1 (MQ=60)

             tgaacaataagtatataTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCAATAACGGCTATTCAGGAAAGAAATCACCACGATTAA                                                                                  <  SRR4302540.9070413/77‑1 (MQ=60)

             TGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAA                                                                                  >  SRR4302540.5017113/1‑94 (MQ=60)

             TGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAA                                                                                  <  SRR4302540.8536134/94‑1 (MQ=60)

               AACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATA                                                                                <  SRR4302540.4723375/94‑1 (MQ=60)

               AACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATA                                                                                >  SRR4302540.2558791/1‑94 (MQ=60)

               AACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATA                                                                                <  SRR4302540.2267356/94‑1 (MQ=60)

               AACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATA                                                                                >  SRR4302540.9137483/1‑94 (MQ=60)

                ACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAA                                                                               >  SRR4302540.8301818/1‑94 (MQ=60)

                ACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAA                                                                               >  SRR4302540.1663418/1‑94 (MQ=60)

                 CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG                                                                              <  SRR4302540.1973048/94‑1 (MQ=60)

                 CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG                                                                              <  SRR4302540.2508116/94‑1 (MQ=60)

                 CGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAG                                                                              >  SRR4302540.1948831/1‑94 (MQ=60)

                  GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGA                                                                             <  SRR4302540.10028814/94‑1 (MQ=60)

                  GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGA                                                                             >  SRR4302540.8430287/1‑94 (MQ=60)

                  GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGA                                                                             <  SRR4302540.3005047/94‑1 (MQ=60)

                  GATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGA                                                                             >  SRR4302540.8430289/1‑94 (MQ=60)

                   ATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAA                                                                            >  SRR4302540.9283053/1‑94 (MQ=60)

                   ATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAA                                                                            >  SRR4302540.6234266/1‑94 (MQ=60)

                    TACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAT                                                                           >  SRR4302540.4893713/1‑94 (MQ=60)

                    TACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAT                                                                           >  SRR4302540.3434855/1‑94 (MQ=60)

                    TACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAAT                                                                           >  SRR4302540.6066426/1‑94 (MQ=60)

                     ACGTTTCTGTATGCCGTAAACACTATAAAGAGTCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT                                                                          <  SRR4302540.9467642/94‑1 (MQ=60)

                     ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT                                                                          <  SRR4302540.9655479/94‑1 (MQ=60)

                     ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT                                                                          <  SRR4302540.9467640/94‑1 (MQ=60)

                     ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT                                                                          <  SRR4302540.9655478/94‑1 (MQ=60)

                     ACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATT                                                                          >  SRR4302540.3125106/1‑94 (MQ=60)

                      CGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTT                                                                         >  SRR4302540.5219687/1‑94 (MQ=60)

                       GTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTC                                                                        <  SRR4302540.4505483/94‑1 (MQ=60)

                       GTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTC                                                                        <  SRR4302540.722715/94‑1 (MQ=60)

                       GTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTC                                                                        >  SRR4302540.6545724/1‑94 (MQ=60)

                        TTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCT                                                                       <  SRR4302540.4383476/94‑1 (MQ=60)

                        TTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCT                                                                       <  SRR4302540.4383475/94‑1 (MQ=60)

                         TTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTT                                                                      <  SRR4302540.2807112/94‑1 (MQ=60)

                          TCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTT                                                                     <  SRR4302540.735914/94‑1 (MQ=60)

                          TCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTT                                                                     <  SRR4302540.8200051/94‑1 (MQ=60)

                           CTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTTTTTA                                                                    <  SRR4302540.3605918/94‑1 (MQ=60)

                           CTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTA                                                                    <  SRR4302540.4648626/94‑1 (MQ=60)

                            TGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAC                                                                   <  SRR4302540.2018807/94‑1 (MQ=60)

                            TGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAC                                                                   <  SRR4302540.7035957/94‑1 (MQ=60)

                            TGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAC                                                                   <  SRR4302540.4323567/94‑1 (MQ=60)

                            TGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTAC                                                                   <  SRR4302540.3299881/94‑1 (MQ=60)

                             GTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACT                                                                  <  SRR4302540.4429643/94‑1 (MQ=60)

                             GTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACT                                                                  >  SRR4302540.3964603/1‑94 (MQ=60)

                               TTGCCGTAAGCACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGA                                                                <  SRR4302540.142572/94‑1 (MQ=60)

                               ATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGA                                                                >  SRR4302540.1510854/1‑94 (MQ=60)

                               ATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGA                                                                <  SRR4302540.7293075/94‑1 (MQ=60)

                                TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC                                                               <  SRR4302540.4900074/94‑1 (MQ=60)

                                TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC                                                               <  SRR4302540.6691265/94‑1 (MQ=60)

                                TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC                                                               <  SRR4302540.962865/94‑1 (MQ=60)

                                TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC                                                               <  SRR4302540.2308148/94‑1 (MQ=60)

                                TGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGAC                                                               <  SRR4302540.4900075/94‑1 (MQ=60)

                                  GCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG                                                             <  SRR4302540.7718626/94‑1 (MQ=60)

                                  CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG                                                             <  SRR4302540.7718632/94‑1 (MQ=60)

                                  CCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAG                                                             <  SRR4302540.7718625/94‑1 (MQ=60)

                                    GTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGG                                                           >  SRR4302540.8395867/1‑94 (MQ=60)

                                    GTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGG                                                           >  SRR4302540.8387372/1‑94 (MQ=60)

                                    GTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGG                                                           >  SRR4302540.5728904/1‑94 (MQ=60)

                                    GTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGG                                                           >  SRR4302540.8663172/1‑94 (MQ=60)

                                     TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGT                                                          >  SRR4302540.1045240/1‑94 (MQ=60)

                                     TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGT                                                          <  SRR4302540.2080116/94‑1 (MQ=60)

                                     TAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGG                                                          >  SRR4302540.1045241/1‑94 (MQ=60)

                                     GAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGT                                                          <  SRR4302540.1467886/94‑1 (MQ=60)

                                      AAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTG                                                         >  SRR4302540.4700792/1‑94 (MQ=60)

                                      AAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTG                                                         <  SRR4302540.423568/94‑1 (MQ=60)

                                      AAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTG                                                         <  SRR4302540.847572/94‑1 (MQ=60)

                                      AAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTG                                                         <  SRR4302540.2962816/94‑1 (MQ=60)

                                       AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA                                                        >  SRR4302540.3448784/1‑94 (MQ=60)

                                       AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA                                                        <  SRR4302540.5533379/94‑1 (MQ=60)

                                       AACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGA                                                        >  SRR4302540.4368890/1‑94 (MQ=60)

                                        ACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAG                                                       >  SRR4302540.4589613/1‑94 (MQ=60)

                                        ACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAG                                                       >  SRR4302540.8275333/1‑94 (MQ=60)

                                        ACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAG                                                       >  SRR4302540.3972504/1‑94 (MQ=60)

                                         CACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGC                                                      >  SRR4302540.8287836/1‑94 (MQ=60)

                                         CACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGC                                                      >  SRR4302540.4940222/1‑94 (MQ=60)

                                         CACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGC                                                      >  SRR4302540.8092017/1‑94 (MQ=60)

                                          ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTtttttcttaaaaggggggga                                                     >  SRR4302540.6786182/1‑74 (MQ=60)

                                          ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTtttttatttacaggggggga                                                     >  SRR4302540.6786181/1‑74 (MQ=60)

                                          ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCA                                                     <  SRR4302540.6931830/94‑1 (MQ=60)

                                          ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCA                                                     >  SRR4302540.6799011/1‑94 (MQ=60)

                                          ACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCA                                                     >  SRR4302540.1154819/1‑94 (MQ=60)

                                           CTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAG                                                    >  SRR4302540.450074/1‑94 (MQ=60)

                                           CTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAG                                                    >  SRR4302540.865686/1‑94 (MQ=60)

                                            TATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGG                                                   <  SRR4302540.2148876/94‑1 (MQ=60)

                                             ATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGG                                                  >  SRR4302540.4431853/1‑94 (MQ=60)

                                              TAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGC                                                 >  SRR4302540.8209536/1‑94 (MQ=60)

                                              TAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGC                                                 <  SRR4302540.6061549/94‑1 (MQ=60)

                                               AAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCA                                                >  SRR4302540.6879381/1‑94 (MQ=60)

                                               AAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCA                                                >  SRR4302540.7842020/1‑94 (MQ=60)

                                                 AGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACT                                              <  SRR4302540.6254794/94‑1 (MQ=60)

                                                  GAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTT                                             >  SRR4302540.1949627/1‑94 (MQ=60)

                                                   AGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTT                                            <  SRR4302540.7471456/94‑1 (MQ=60)

                                                    GGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTT                                           >  SRR4302540.4944682/1‑94 (MQ=60)

                                                    GGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTT                                           <  SRR4302540.455165/94‑1 (MQ=60)

                                                      CGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAT                                         <  SRR4302540.4907064/94‑1 (MQ=60)

                                                      CGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTAT                                         <  SRR4302540.7638477/94‑1 (MQ=60)

                                                       GTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATC                                        >  SRR4302540.1047262/1‑94 (MQ=60)

                                                         TACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCT                                      >  SRR4302540.9137837/1‑94 (MQ=60)

                                                         TACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCT                                      >  SRR4302540.5650163/1‑94 (MQ=60)

                                                          ACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTG                                     <  SRR4302540.1384838/94‑1 (MQ=60)

                                                           CAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGT                                    >  SRR4302540.6807948/1‑94 (MQ=60)

                                                           CAAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGT                                    >  SRR4302540.4731432/1‑94 (MQ=60)

                                                            AAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTC                                   <  SRR4302540.9423117/94‑1 (MQ=60)

                                                            AAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTC                                   <  SRR4302540.8735039/94‑1 (MQ=60)

                                                            AAGTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTC                                   <  SRR4302540.306293/94‑1 (MQ=60)

                                                            AAGTCGACTCATTAACGACTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTC                                   <  SRR4302540.9079316/94‑1 (MQ=60)

                                                              GTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAG                                 <  SRR4302540.6971063/94‑1 (MQ=60)

                                                              GTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAG                                 <  SRR4302540.3789515/94‑1 (MQ=60)

                                                              GTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAG                                 <  SRR4302540.8152981/94‑1 (MQ=60)

                                                              GTCGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAG                                 <  SRR4302540.7379778/94‑1 (MQ=60)

                                                                CGACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTT                               <  SRR4302540.4434528/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.3380454/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.3346955/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              >  SRR4302540.8063793/1‑94 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.4175871/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              >  SRR4302540.10158886/1‑94 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.6232631/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.1362732/94‑1 (MQ=60)

                                                                 GACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTC                              <  SRR4302540.1362731/94‑1 (MQ=60)

                                                                  ACTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCG                             >  SRR4302540.9778990/1‑94 (MQ=60)

                                                                   CTCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGT                            >  SRR4302540.2100746/1‑94 (MQ=60)

                                                                    TCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTT                           >  SRR4302540.767334/1‑94 (MQ=60)

                                                                    TCATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTT                           >  SRR4302540.6620543/1‑94 (MQ=60)

                                                                     CATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTT                          <  SRR4302540.3140668/94‑1 (MQ=60)

                                                                     CATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTT                          >  SRR4302540.1963341/1‑94 (MQ=60)

                                                                     CATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTT                          >  SRR4302540.4070327/1‑94 (MQ=60)

                                                                      ATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTT                         >  SRR4302540.7079308/1‑94 (MQ=60)

                                                                      ATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTT                         >  SRR4302540.829324/1‑94 (MQ=60)

                                                                      ATTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTT                         >  SRR4302540.1871184/1‑94 (MQ=60)

                                                                       TTAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTA                        <  SRR4302540.436268/94‑1 (MQ=60)

                                                                        TAACGGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTAC                       <  SRR4302540.986253/94‑1 (MQ=60)

                                                                            GGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAC                   >  SRR4302540.6803961/1‑94 (MQ=60)

                                                                            GGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAC                   <  SRR4302540.6519555/94‑1 (MQ=60)

                                                                            GGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAC                   <  SRR4302540.7087523/94‑1 (MQ=60)

                                                                            GGCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCAC                   <  SRR4302540.8351928/94‑1 (MQ=60)

                                                                             GCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCCCT                  <  SRR4302540.8471065/94‑1 (MQ=60)

                                                                             GCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACT                  <  SRR4302540.8471064/94‑1 (MQ=60)

                                                                             GCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACT                  >  SRR4302540.9249111/1‑94 (MQ=60)

                                                                             GCTATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGCGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACT                  >  SRR4302540.9249110/1‑94 (MQ=60)

                                                                                ATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCT               <  SRR4302540.4840385/94‑1 (MQ=60)

                                                                                ATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCT               <  SRR4302540.1482217/94‑1 (MQ=60)

                                                                                ATTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCT               >  SRR4302540.2563663/1‑94 (MQ=60)

                                                                                 TTCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTT              >  SRR4302540.5000237/1‑94 (MQ=60)

                                                                                  TCAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTC             >  SRR4302540.9250982/1‑94 (MQ=60)

                                                                                   CAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCC            <  SRR4302540.1555893/94‑1 (MQ=60)

                                                                                   CAGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCC            <  SRR4302540.6291021/94‑1 (MQ=60)

                                                                                    AGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCG           >  SRR4302540.3699336/1‑94 (MQ=60)

                                                                                    AGGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCG           >  SRR4302540.8565493/1‑94 (MQ=60)

                                                                                     GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG          <  SRR4302540.8552569/94‑1 (MQ=60)

                                                                                     GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG          <  SRR4302540.5777714/94‑1 (MQ=60)

                                                                                     GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG          <  SRR4302540.1372425/94‑1 (MQ=60)

                                                                                     GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG          <  SRR4302540.6657274/94‑1 (MQ=60)

                                                                                     GGAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGG          >  SRR4302540.8245112/1‑94 (MQ=60)

                                                                                      GAAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGG         >  SRR4302540.1505139/1‑94 (MQ=60)

                                                                                       AAAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGC        <  SRR4302540.7233989/94‑1 (MQ=60)

                                                                                        AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT       <  SRR4302540.9223723/94‑1 (MQ=60)

                                                                                        AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT       <  SRR4302540.9863311/94‑1 (MQ=60)

                                                                                        AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT       >  SRR4302540.1947231/1‑94 (MQ=60)

                                                                                        AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT       <  SRR4302540.1744648/94‑1 (MQ=60)

                                                                                        AAGGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCT       >  SRR4302540.1034220/1‑94 (MQ=60)

                                                                                          GGCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTAT     <  SRR4302540.2184816/94‑1 (MQ=60)

                                                                                           GCGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATA    <  SRR4302540.8835950/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.832365/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.7195292/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.6056695/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.5514151/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.2578811/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTATATCCTGTCAGTTCGTTTTCCGCACTTCTTCCGGGCTATAT   <  SRR4302540.5514153/94‑1 (MQ=60)

                                                                                            CGTCGCCACGATTAATAAGAATTTCTTCACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATAT   <  SRR4302540.8229808/94‑1 (MQ=60)

                                                                                             GTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATA  <  SRR4302540.8610251/94‑1 (MQ=60)

                                                                                             GTCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATA  >  SRR4302540.6414155/1‑94 (MQ=60)

TAATTGGTGGTAATGAACGATACGTTTCTGTATGCCGTAAACACTATAAAGAGGCGTTACAAGTCGACTCATTAACGGCTATTCAGGAAAGGCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATA  >  NC_000913/1293261‑1293447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`