Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,338,553	A→G	H96R (CAC→CGC)	yciS →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,338,553	0	A	G	100.0%	656.3 / NA	204	H96R (CAC→CGC)	yciS	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/102); total (102/102)

Only 100 of 212 total aligned reads displayed.

AGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCC  >  NC_000913/1338464‑1338642

aGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTc                                                                                        >  1:4144735/1‑93 (MQ=255)

  ttCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGt                                                                                      <  1:4207557/93‑1 (MQ=255)

  ttCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGt                                                                                      >  2:1922666/1‑93 (MQ=255)

   tCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTc                                                                                     <  1:1649239/93‑1 (MQ=255)

    cGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCa                                                                                    <  2:425344/93‑1 (MQ=255)

     gtgtTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAg                                                                                   <  2:5619660/93‑1 (MQ=255)

      tgtTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAgc                                                                                  >  2:2646300/1‑93 (MQ=255)

      tgtTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGCGCCGCGCTCGtacgc                                                                                  >  2:554489/1‑89 (MQ=255)

      tgtTTCCCTGGCGAGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAgc                                                                                  <  2:3796451/93‑1 (MQ=255)

       gtTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAgcg                                                                                 >  1:4330394/1‑93 (MQ=255)

       gtTCCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAgcg                                                                                 <  1:5304140/93‑1 (MQ=255)

         ttCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAgcggc                                                                               <  2:3386271/93‑1 (MQ=255)

           cccTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGa                                                                             <  1:1669355/93‑1 (MQ=255)

            ccTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGaa                                                                            >  1:5643173/1‑93 (MQ=255)

            ccTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGaa                                                                            <  1:2328068/93‑1 (MQ=255)

             cTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAg                                                                           <  1:2694660/93‑1 (MQ=255)

             cTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAg                                                                           <  1:6041116/93‑1 (MQ=255)

             cTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAg                                                                           <  1:5416114/93‑1 (MQ=255)

                gcgcgcgcTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGaa                                                                        <  2:5787717/93‑1 (MQ=255)

                    gcgcTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAAc                                                                    >  1:1331140/1‑93 (MQ=255)

                      gcTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACtt                                                                  >  2:2951643/1‑93 (MQ=255)

                       cTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACttt                                                                 <  1:5241506/93‑1 (MQ=255)

                       cTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACttt                                                                 <  1:616378/93‑1 (MQ=255)

                       cTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGGCCGCGGCGAAGGAATAACttt                                                                 >  2:2371423/1‑93 (MQ=255)

                        tGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTc                                                                >  1:4408573/1‑93 (MQ=255)

                        tGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTc                                                                <  2:5187466/93‑1 (MQ=255)

                          aaCGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTa                                                              <  1:1614693/93‑1 (MQ=255)

                           aCGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTAt                                                             <  2:3112325/93‑1 (MQ=255)

                            cGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATg                                                            >  2:13048/1‑93 (MQ=255)

                            cGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATg                                                            <  2:1997747/93‑1 (MQ=255)

                             gTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGc                                                           >  2:4523302/1‑93 (MQ=255)

                             gTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGc                                                           <  1:5188806/93‑1 (MQ=255)

                              tAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCt                                                          >  1:2924463/1‑93 (MQ=255)

                               aaaaTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTg                                                         >  2:3188144/1‑93 (MQ=255)

                                aaaTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTgg                                                        <  1:683613/93‑1 (MQ=255)

                                aaaTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTgg                                                        <  1:3303496/93‑1 (MQ=255)

                                  aTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAg                                                      <  2:4650041/93‑1 (MQ=255)

                                  aTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAg                                                      >  2:6160518/1‑93 (MQ=255)

                                   tAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgt                                                     <  2:2863487/93‑1 (MQ=255)

                                   tAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgt                                                     >  1:2389252/1‑93 (MQ=255)

                                   tAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgt                                                     >  1:3602249/1‑93 (MQ=255)

                                   tAAAGCGACTGGAAAACCAGCATTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgt                                                     >  1:3141587/1‑93 (MQ=255)

                                      aGCGACTGGAAAACCCGCTTTCGCCTGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAGCTTTCTATGCTGGAgttgt                                                  <  2:1496381/93‑1 (MQ=255)

                                      aGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttgt                                                  <  1:1019091/93‑1 (MQ=255)

                                      aGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttgt                                                  >  1:1745991/1‑93 (MQ=255)

                                      aGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttgt                                                  <  2:1753175/93‑1 (MQ=255)

                                       gCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttgtt                                                 >  2:4358017/1‑93 (MQ=255)

                                        cGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttgttg                                                <  1:640990/93‑1 (MQ=255)

                                            tGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTc                                            >  2:5276079/1‑93 (MQ=255)

                                            tGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTc                                            <  2:4475156/93‑1 (MQ=255)

                                            tGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTc                                            <  1:5933504/93‑1 (MQ=255)

                                              gAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTg                                          >  1:1314548/1‑93 (MQ=255)

                                               aaaaCCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGc                                         >  2:6076203/1‑93 (MQ=255)

                                                 aaCCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCtt                                       <  2:162801/93‑1 (MQ=255)

                                                 aaCCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCtt                                       <  1:1838444/93‑1 (MQ=255)

                                                 aaCCAGCTTTCACCCGCGACTAACGTGCCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCtt                                       <  2:4107431/93‑1 (MQ=255)

                                                  aCCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCttt                                      <  1:1909627/93‑1 (MQ=255)

                                                  aCCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCttt                                      >  2:814685/1‑93 (MQ=255)

                                                   ccAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCtttt                                     >  2:506653/1‑93 (MQ=255)

                                                    cAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTg                                    <  1:3486531/93‑1 (MQ=255)

                                                    cAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTg                                    <  2:121514/93‑1 (MQ=255)

                                                    cAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTg                                    >  2:2867990/1‑93 (MQ=255)

                                                    cAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTg                                    >  1:5519479/1‑93 (MQ=255)

                                                     aGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGc                                   >  2:2743161/1‑93 (MQ=255)

                                                      gCTTTCGCCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGcc                                  <  2:952978/93‑1 (MQ=255)

                                                       cTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCt                                 >  1:2340432/1‑93 (MQ=255)

                                                         ttCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGt                               <  2:3320141/93‑1 (MQ=255)

                                                             cccGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGcc                           <  2:2178229/93‑1 (MQ=255)

                                                              ccGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCg                          <  1:942591/93‑1 (MQ=255)

                                                               cgcgACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGc                         <  1:1666987/93‑1 (MQ=255)

                                                               cgcgACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGc                         >  1:3530127/1‑93 (MQ=255)

                                                                 cgACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTg                       <  1:3006495/93‑1 (MQ=255)

                                                                  gACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGc                      >  2:2303623/1‑93 (MQ=255)

                                                                   aCTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGcc                     >  2:1537940/1‑93 (MQ=255)

                                                                   aCTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGcc                     >  1:3915538/1‑93 (MQ=255)

                                                                    cTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCt                    >  1:4736770/1‑93 (MQ=255)

                                                                    cTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCt                    <  2:428906/93‑1 (MQ=255)

                                                                     tGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTa                   >  1:5220304/1‑93 (MQ=255)

                                                                        cGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGTAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATgg                <  2:394125/93‑1 (MQ=255)

                                                                         gTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATTGc               >  2:252145/1‑93 (MQ=255)

                                                                         gTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGCTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGc               >  2:4401883/1‑93 (MQ=255)

                                                                          tGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCt              >  2:663954/1‑93 (MQ=255)

                                                                          tGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCt              >  1:1956478/1‑93 (MQ=255)

                                                                          tGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCt              >  1:2072570/1‑93 (MQ=255)

                                                                           ggCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTg             >  2:4977946/1‑93 (MQ=255)

                                                                           ggCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTg             <  2:5742700/93‑1 (MQ=255)

                                                                            gCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTgg            <  1:1076444/93‑1 (MQ=255)

                                                                            gCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTgg            <  1:6257444/93‑1 (MQ=255)

                                                                            gCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGAAGCCGCTGCCGATGGCTgg            <  2:6115989/93‑1 (MQ=255)

                                                                             cTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGt           >  2:3528094/1‑93 (MQ=255)

                                                                              tGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGta          >  2:1874959/1‑93 (MQ=255)

                                                                              tGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGta          <  2:3805547/93‑1 (MQ=255)

                                                                              tGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGta          <  1:1399982/93‑1 (MQ=255)

                                                                                tAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGgata        >  2:6024029/1‑93 (MQ=255)

                                                                                   tGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATgg     <  1:3327085/93‑1 (MQ=255)

                                                                                   tGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATgg     <  1:610480/93‑1 (MQ=255)

                                                                                     ccGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATTGGc   >  2:6264932/1‑93 (MQ=255)

                                                                                     ccGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGc   <  1:3797785/93‑1 (MQ=255)

                                                                                      cgcgCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGcc  <  1:3725308/93‑1 (MQ=255)

                                                                                      cgcgCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGcc  <  2:2768510/93‑1 (MQ=255)

AGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCC  >  NC_000913/1338464‑1338642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCA  >  NC_000913/1338460‑1338645

TGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCG                                                                                              >  SRR4302533.5544297/1‑94 (MQ=60)

 GCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGC                                                                                             >  SRR4302533.4129416/1‑94 (MQ=60)

  CGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCT                                                                                            <  SRR4302533.1718124/94‑1 (MQ=60)

   GAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTC                                                                                           >  SRR4302533.4169856/1‑94 (MQ=60)

      TTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTC                                                                                        <  SRR4302533.4233012/94‑1 (MQ=60)

      TTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTC                                                                                        >  SRR4302533.1393304/1‑94 (MQ=60)

      TTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTC                                                                                        >  SRR4302533.1628342/1‑94 (MQ=60)

       TCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCA                                                                                       <  SRR4302533.1659232/94‑1 (MQ=60)

         GTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAACCCAGCTTTCCCCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGC                                                                                     <  SRR4302533.3533015/94‑1 (MQ=60)

         GTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGC                                                                                     >  SRR4302533.3329203/1‑94 (MQ=60)

          TGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCG                                                                                    >  SRR4302533.4356483/1‑94 (MQ=60)

           GTTCCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGG                                                                                   <  SRR4302533.5335923/94‑1 (MQ=60)

              TCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCACCGCCGA                                                                                >  SRR4302533.1742483/1‑94 (MQ=60)

               CCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAA                                                                               <  SRR4302533.2395754/94‑1 (MQ=60)

               CCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAA                                                                               <  SRR4302533.1679440/94‑1 (MQ=60)

               CCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAA                                                                               >  SRR4302533.5677283/1‑94 (MQ=60)

                CCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAG                                                                              <  SRR4302533.2342480/94‑1 (MQ=60)

                 CTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGG                                                                             <  SRR4302533.2711173/94‑1 (MQ=60)

                 CTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGG                                                                             <  SRR4302533.5448686/94‑1 (MQ=60)

                 CTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGG                                                                             <  SRR4302533.6077724/94‑1 (MQ=60)

                    GCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAAT                                                                          <  SRR4302533.3596747/94‑1 (MQ=60)

                     GGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATA                                                                         <  SRR4302533.2029534/94‑1 (MQ=60)

                       CGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAAC                                                                       >  SRR4302533.1339125/1‑94 (MQ=60)

                        GCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGCATAACT                                                                      >  SRR4302533.4171516/1‑94 (MQ=60)

                          GCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTT                                                                    <  SRR4302533.6238669/94‑1 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTT                                                                   >  SRR4302533.5224275/1‑94 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTC                                                                   <  SRR4302533.561830/94‑1 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTC                                                                   >  SRR4302533.4435197/1‑94 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTC                                                                   >  SRR4302533.6029871/1‑94 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTC                                                                   <  SRR4302533.619997/94‑1 (MQ=60)

                           CTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTC                                                                   <  SRR4302533.5273014/94‑1 (MQ=60)

                             GAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTA                                                                 <  SRR4302533.4516526/94‑1 (MQ=60)

                              AACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTAT                                                                <  SRR4302533.1624483/94‑1 (MQ=60)

                              AACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTAT                                                                >  SRR4302533.6183711/1‑94 (MQ=60)

                                CGTAAAATAAAGCGGCTGGAAAACGAGCTTTCACCCGCGACTGCCGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGC                                                              >  SRR4302533.5349881/1‑94 (MQ=60)

                                CGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGC                                                              >  SRR4302533.3673539/1‑94 (MQ=60)

                                CGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGC                                                              >  SRR4302533.2353293/1‑94 (MQ=60)

                                CGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGC                                                              <  SRR4302533.5274169/94‑1 (MQ=60)

                                CGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGC                                                              >  SRR4302533.5742238/1‑94 (MQ=60)

                                 GTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCT                                                             <  SRR4302533.5220119/94‑1 (MQ=60)

                                 GTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCT                                                             >  SRR4302533.2942364/1‑94 (MQ=60)

                                  TAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTG                                                            <  SRR4302533.1736421/94‑1 (MQ=60)

                                   AAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTCCTATGCTGG                                                           >  SRR4302533.3552528/1‑94 (MQ=60)

                                    AAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGA                                                          <  SRR4302533.687656/94‑1 (MQ=60)

                                    AAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGA                                                          <  SRR4302533.3323899/94‑1 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.5020743/1‑94 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.3624418/1‑94 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.2404008/1‑94 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.3232486/1‑94 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.1665351/1‑94 (MQ=60)

                                      ATAAAGCGACTGGAAAACCAGCATTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGT                                                        >  SRR4302533.3160902/1‑94 (MQ=60)

                                         AAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGT                                                     >  SRR4302533.1756611/1‑94 (MQ=60)

                                          AGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTT                                                    <  SRR4302533.1025080/94‑1 (MQ=60)

                                            CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGT                                                  >  SRR4302533.3108221/1‑94 (MQ=60)

                                            CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGT                                                  <  SRR4302533.644758/94‑1 (MQ=60)

                                            CGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGT                                                  <  SRR4302533.1677727/94‑1 (MQ=60)

                                                TGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCT                                              <  SRR4302533.5969375/94‑1 (MQ=60)

                                                 GGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTG                                             <  SRR4302533.2902905/94‑1 (MQ=60)

                                                 GGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTG                                             >  SRR4302533.1322434/1‑94 (MQ=60)

                                                    AAACCAGCTTTCACCCGCGACTGACGCGGCTGTAGGGACGCGCTCGTCAGCGGCGAAGGAATAACCTTCTATGCGAGAGTTGTTGTTTCTGCTT                                          >  SRR4302533.2828210/1‑94 (MQ=60)

                                                     AACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTT                                         <  SRR4302533.1849655/94‑1 (MQ=60)

                                                     AACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACCTTCTATGCTGGAGTTGTTGTTTCTGCTTT                                         >  SRR4302533.1906029/1‑94 (MQ=60)

                                                      ACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTT                                        <  SRR4302533.1921278/94‑1 (MQ=60)

                                                       CCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTG                                       >  SRR4302533.5552804/1‑94 (MQ=60)

                                                        CAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGC                                      <  SRR4302533.3508033/94‑1 (MQ=60)

                                                         AGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCC                                     <  SRR4302533.1332614/94‑1 (MQ=60)

                                                         AGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCC                                     >  SRR4302533.1935502/1‑94 (MQ=60)

                                                          GCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTTTGCTTTTGCCT                                    >  SRR4302533.3750355/1‑94 (MQ=60)

                                                          GCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCT                                    >  SRR4302533.2354924/1‑94 (MQ=60)

                                                                ACCCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCC                              <  SRR4302533.1497668/94‑1 (MQ=60)

                                                                  CCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGC                            <  SRR4302533.948137/94‑1 (MQ=60)

                                                                  CCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGC                            <  SRR4302533.1842081/94‑1 (MQ=60)

                                                                  CCGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGC                            >  SRR4302533.3551885/1‑94 (MQ=60)

                                                                   CGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCT                           <  SRR4302533.1677058/94‑1 (MQ=60)

                                                                   CGCGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCT                           >  SRR4302533.2102671/1‑94 (MQ=60)

                                                                     CGACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGC                         <  SRR4302533.3024885/94‑1 (MQ=60)

                                                                      GACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCC                        >  SRR4302533.3939453/1‑94 (MQ=60)

                                                                       ACTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCT                       >  SRR4302533.4765492/1‑94 (MQ=60)

                                                                        CTGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTA                      >  SRR4302533.5251721/1‑94 (MQ=60)

                                                                         TGACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTAT                     <  SRR4302533.526464/94‑1 (MQ=60)

                                                                          GACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATG                    >  SRR4302533.1074521/1‑94 (MQ=60)

                                                                          GACGTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATG                    <  SRR4302533.6330971/94‑1 (MQ=60)

                                                                             GTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCT                 >  SRR4302533.1968414/1‑94 (MQ=60)

                                                                             GTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCT                 >  SRR4302533.2085336/1‑94 (MQ=60)

                                                                             GTGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCT                 >  SRR4302533.2970749/1‑94 (MQ=60)

                                                                              TGGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTG                <  SRR4302533.2618733/94‑1 (MQ=60)

                                                                               GGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGG               <  SRR4302533.5546167/94‑1 (MQ=60)

                                                                               GGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGG               >  SRR4302533.785197/1‑94 (MQ=60)

                                                                               GGCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGG               <  SRR4302533.3852767/94‑1 (MQ=60)

                                                                                GCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGT              <  SRR4302533.1082789/94‑1 (MQ=60)

                                                                                GCTGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGT              <  SRR4302533.6294866/94‑1 (MQ=60)

                                                                                  TGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTAT            >  SRR4302533.4970899/1‑94 (MQ=60)

                                                                                  TGTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTAT            <  SRR4302533.1408420/94‑1 (MQ=60)

                                                                                   GTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATA           >  SRR4302533.652580/1‑94 (MQ=60)

                                                                                   GTAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATA           <  SRR4302533.121584/94‑1 (MQ=60)

                                                                                    TAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATAT          <  SRR4302533.3360740/94‑1 (MQ=60)

                                                                                    TAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATAT          <  SRR4302533.2457611/94‑1 (MQ=60)

                                                                                    TAGTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATAT          >  SRR4302533.3958814/1‑94 (MQ=60)

                                                                                      GTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGG        <  SRR4302533.6083462/94‑1 (MQ=60)

                                                                                      GTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGG        <  SRR4302533.6032207/94‑1 (MQ=60)

                                                                                      GTGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGG        <  SRR4302533.4412694/94‑1 (MQ=60)

                                                                                       TGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGG       <  SRR4302533.614069/94‑1 (MQ=60)

                                                                                       TGCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGG       <  SRR4302533.3347644/94‑1 (MQ=60)

                                                                                        GCCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGC      <  SRR4302533.4253265/94‑1 (MQ=60)

                                                                                         CCGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCC     <  SRR4302533.3821032/94‑1 (MQ=60)

                                                                                          CGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCG    >  SRR4302533.149431/1‑94 (MQ=60)

                                                                                          CGCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCG    <  SRR4302533.3748165/94‑1 (MQ=60)

                                                                                           GCGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGC   >  SRR4302533.559284/1‑94 (MQ=60)

                                                                                            CGCTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCA  >  SRR4302533.5233340/1‑94 (MQ=60)

TGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCA  >  NC_000913/1338460‑1338645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`