Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,349,220 |
(G)7→9 |
intergenic (‑157/+211) |
fabI ← / ← ycjD |
enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,349,213 | 1 | . | G | 90.4%
| 226.1
/ 20.1
| 83 | intergenic (‑150/+218) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/6); new base G (17/58); total (19/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-01 |
| * | NC_000913 | 1,349,213 | 2 | . | G | 81.9%
| 203.8
/ 46.9
| 83 | intergenic (‑150/+218) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase (NADH)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (5/10); new base G (14/54); total (19/64) |
| Fisher's exact test for biased strand distribution p-value = 3.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 |
Only 100 of 115 total aligned reads displayed.
TAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCA > NC_000913/1349122‑1349292
||
tAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g < 1:6056945/93‑1 (MQ=255)
aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 1:2415666/1‑93 (MQ=255)
aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 2:3387342/1‑93 (MQ=255)
aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑g > 2:5388314/1‑93 (MQ=255)
tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg < 1:4704316/93‑1 (MQ=255)
tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg < 1:1221315/93‑1 (MQ=255)
tAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg > 1:783208/1‑93 (MQ=255)
aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g < 1:4597534/93‑1 (MQ=255)
aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g < 2:3373784/93‑1 (MQ=255)
aaaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑g > 1:1006415/1‑93 (MQ=255)
aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg < 2:2121958/93‑1 (MQ=255)
aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg < 2:1236626/93‑1 (MQ=255)
aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg > 2:5626174/1‑93 (MQ=255)
aaCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gg > 2:5998091/1‑93 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:3449201/93‑1 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:616245/93‑1 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 1:1135277/93‑1 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg < 2:5545302/93‑1 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg > 2:736367/1‑93 (MQ=255)
aCAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCGGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggg > 1:1177168/1‑93 (MQ=255)
cAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gggg > 1:4029118/1‑92 (MQ=255)
aGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggggg > 1:4044465/1‑91 (MQ=255)
aGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑ggggg > 1:5832396/1‑91 (MQ=255)
gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑g‑‑ggg‑‑gggggg > 2:5249082/1‑90 (MQ=255)
gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggc < 2:2429656/93‑1 (MQ=255)
gTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggc > 2:642843/1‑93 (MQ=255)
aCGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgg > 1:29413/1‑91 (MQ=255)
gAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgctt > 2:237707/1‑89 (MQ=255)
gAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGg‑‑ggcgctt > 2:4956103/1‑89 (MQ=255)
aaCGGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑tttt > 1:942791/1‑93 (MQ=255)
aaGATAAACGGTTATTATAATCACCCT‑GGCTGTCAGTAGTTATAGTTGCCAGGTCGGACC‑GGAGCAGGATGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTc < 2:2853589/92‑1 (MQ=255)
gATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTccc > 1:4095644/1‑93 (MQ=255)
aTAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTtccc > 1:979596/1‑93 (MQ=255)
tAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCt < 1:1352558/93‑1 (MQ=255)
aaaCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCTc > 2:771180/1‑93 (MQ=255)
aaCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTccccccc > 1:2040629/1‑90 (MQ=255)
aCGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCTCAc > 2:1813759/1‑93 (MQ=255)
cGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCCCAcc > 2:756075/1‑93 (MQ=255)
ggTTATTATAGTCACCCT‑GGCTGTGAGTAGTTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCAccc < 1:4288771/93‑1 (MQ=255)
ggTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCAccc < 2:5645069/93‑1 (MQ=255)
ggTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCt > 1:4233108/1‑93 (MQ=255)
gTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCccccccccc > 1:5659498/1‑92 (MQ=255)
tttttaaAATCAACCTGGGCTGT‑AATAGCTAAAGTTCCCCGGTCCGGCCGGGACCGGCCTGGG‑‑GAGG‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTa < 2:3362634/90‑1 (MQ=255)
ttattaTAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTa < 1:2971150/93‑1 (MQ=255)
tattatAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCccccccccccc > 1:1538658/1‑90 (MQ=255)
attatAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑c < 1:4472311/93‑1 (MQ=255)
attatAATCAACCT‑GACTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑c < 2:5962353/93‑1 (MQ=255)
tataATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCct > 1:3177827/1‑93 (MQ=255)
tataATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCct < 2:3024143/93‑1 (MQ=255)
taATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCctc < 2:3142863/93‑1 (MQ=255)
aTCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCtctc < 1:4562490/93‑1 (MQ=39)
tCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTcc < 2:4425908/93‑1 (MQ=39)
cAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTccc > 1:2143565/1‑93 (MQ=39)
cT‑GGCTGTGATTAGCTATAGTTCCCGGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCaga < 2:2759138/93‑1 (MQ=37)
cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTTCCCCCCCCCC‑A‑CCCCCTccccccc > 1:3820194/1‑90 (MQ=255)
cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTTCCCCCCCCCCA‑A‑ACCCCTCCCCcga > 2:3030242/1‑93 (MQ=255)
cT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCaga < 2:2504697/93‑1 (MQ=38)
ggCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgg < 1:3120308/93‑1 (MQ=38)
ggCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgg < 1:5911470/93‑1 (MQ=38)
gCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAggg < 1:3390771/93‑1 (MQ=38)
cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 1:778632/93‑1 (MQ=37)
cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 2:3580948/93‑1 (MQ=37)
cTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAgggg < 1:5869653/93‑1 (MQ=37)
tgtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCTA‑A‑CCCTCCTCCCACCgggg > 2:5825638/1‑93 (MQ=255)
tgtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCCCACCCCC‑A‑CCCCCTCCCCCCAggggg > 2:2987704/1‑92 (MQ=255)
gtgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCg < 1:4909907/93‑1 (MQ=37)
tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 2:5278214/93‑1 (MQ=37)
tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 1:2081604/93‑1 (MQ=37)
tgAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGa < 2:3472245/93‑1 (MQ=37)
gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:6144376/93‑1 (MQ=37)
gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:1256274/93‑1 (MQ=37)
gAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 1:1196156/93‑1 (MQ=37)
gAGTAGCTATAGTTGACAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAg < 2:2944012/93‑1 (MQ=25)
aGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgg < 1:4738844/93‑1 (MQ=37)
aGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgg < 1:1943569/93‑1 (MQ=37)
gTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCGGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAggg < 2:3151092/93‑1 (MQ=25)
tggttataTTTGCCAGTCCCGACG‑GGGGCAGCCTGCGCCG‑GG‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgggg < 2:2480520/89‑1 (MQ=9)
tAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAgggg < 2:5475066/93‑1 (MQ=25)
aGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGa < 2:4054790/93‑1 (MQ=25)
gCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCCA‑ACCCCTCCCCCCCGgggggggggggg > 1:5031659/1‑93 (MQ=255)
gCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAc < 2:768334/93‑1 (MQ=25)
gtataGTTGCCAGGGCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAcc < 2:5496529/92‑1 (MQ=21)
cTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGAcc < 1:1589656/93‑1 (MQ=25)
ataGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGCTTTTTCCCCCCCCCCCACC‑CCCCCCCCCCAGAGggggggggggcgc > 1:2789774/1‑90 (MQ=255)
aGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTAt < 1:2362574/93‑1 (MQ=25)
gTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTAtt < 2:818272/93‑1 (MQ=25)
ttGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATtg < 1:3725250/93‑1 (MQ=25)
tGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATtgt < 2:326072/93‑1 (MQ=25)
tCCGACC‑GGAGCAGGCTGCG‑‑G‑CAG‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 2:3909769/93‑1 (MQ=255)
cgcGACC‑GGAGCAGGGTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCGCCCTA‑A‑CCCCGCCCCCAGAGGGGCGAGGGGACCTGACTGGGCAAata < 2:5790339/91‑1 (MQ=16)
ccGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 1:334463/93‑1 (MQ=25)
ccGACC‑GGAGCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAatat < 1:1620376/93‑1 (MQ=25)
caCC‑GGAGCAGTCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTg < 2:6308122/92‑1 (MQ=21)
cc‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGGGTGGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGtt < 1:342607/93‑1 (MQ=25)
gAGCAGGCTGCG‑‑G‑CA‑‑GGAGGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTAcc < 2:3517896/93‑1 (MQ=25)
gCAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTAcccc < 2:84701/93‑1 (MQ=25)
cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑T‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:3026622/93‑1 (MQ=25)
cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:5783191/93‑1 (MQ=25)
cAGGCTGCG‑‑G‑CAGGG‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 1:5772779/93‑1 (MQ=25)
cAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGGGCCGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCa < 2:5436536/93‑1 (MQ=25)
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TAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCT‑GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACC‑GGAGCAGGCTGCG‑‑G‑CA‑‑G‑‑GGG‑‑GGG‑‑CGC‑TTTTCCCCTCACCCTA‑A‑CCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCA > NC_000913/1349122‑1349292
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACAG > NC_000913/1349127‑1349313
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AACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCGGCGGC‑‑A‑‑GGGG‑‑GGG > SRR4302533.1184233/1‑94 (MQ=60)
ACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGG < SRR4302533.1142028/94‑1 (MQ=60)
ACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGG < SRR4302533.3470496/94‑1 (MQ=60)
ACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGG > SRR4302533.4053640/1‑94 (MQ=60)
ACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGG < SRR4302533.619864/94‑1 (MQ=60)
CAGTACGAGCAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGGG > SRR4302533.754473/1‑94 (MQ=60)
CAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGGG > SRR4302533.5867645/1‑94 (MQ=60)
CAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGGG > SRR4302533.4069082/1‑94 (MQ=60)
TACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggggc > SRR4302533.2682121/1‑89 (MQ=60)
TACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgg > SRR4302533.29612/1‑89 (MQ=60)
GAACGGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AG‑GGGG‑‑GGGCGCTTTT > SRR4302533.948337/1‑94 (MQ=60)
GAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTT > SRR4302533.5259953/1‑94 (MQ=60)
GAACAGATAAACGGTCATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTT > SRR4302533.4004132/1‑94 (MQ=60)
AACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTT < SRR4302533.4374813/94‑1 (MQ=60)
ACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTC < SRR4302533.1538041/94‑1 (MQ=60)
ACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTC < SRR4302533.1304795/94‑1 (MQ=60)
CAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCCTTTCC > SRR4302533.3957815/1‑94 (MQ=60)
AGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCC > SRR4302533.4120578/1‑94 (MQ=60)
GATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTTCCC > SRR4302533.985339/1‑94 (MQ=60)
TAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTC < SRR4302533.1360692/94‑1 (MQ=60)
TAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttcgcc > SRR4302533.2233314/1‑79 (MQ=60)
AAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCccc > SRR4302533.2053207/1‑91 (MQ=60)
AACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCGGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttcccccc > SRR4302533.3632991/1‑77 (MQ=60)
AACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCAC < SRR4302533.5245325/94‑1 (MQ=60)
CGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AG‑GGGG‑‑GGGCGCTTTTCCCCTCACCCT > SRR4302533.4258689/1‑94 (MQ=60)
CGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttttccgcccc > SRR4302533.5399259/1‑75 (MQ=60)
GGTTATTATAGTCACCCTGGCTGTGAGTAGTTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCT < SRR4302533.4314561/94‑1 (MQ=60)
GGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccccccc > SRR4302533.5693699/1‑74 (MQ=60)
TTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAA < SRR4302533.2989320/94‑1 (MQ=60)
TTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttttcctcctcccc > SRR4302533.3292247/1‑72 (MQ=60)
TTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccccccccc > SRR4302533.1547923/1‑72 (MQ=60)
ATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACC < SRR4302533.4499363/94‑1 (MQ=60)
TTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AG‑GGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCT > SRR4302533.3197372/1‑94 (MQ=60)
ATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCC < SRR4302533.4590159/94‑1 (MQ=60)
TCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCC > SRR4302533.2156772/1‑94 (MQ=60)
CCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttccccccccccaccccctccccccc > SRR4302533.3843554/1‑59 (MQ=60)
CTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGgcgctttttcccgccccccccccccccccccccccc > SRR4302533.2357250/1‑58 (MQ=60)
TGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGG < SRR4302533.4600772/94‑1 (MQ=60)
TGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGG < SRR4302533.3161181/94‑1 (MQ=60)
GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGG < SRR4302533.3139497/94‑1 (MQ=60)
GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGG < SRR4302533.5947185/94‑1 (MQ=60)
GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttttctccccctcccacacgcccccccccc > SRR4302533.5351689/1‑56 (MQ=60)
GGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccgcccccccacccccccccccccg > SRR4302533.452215/1‑56 (MQ=60)
GCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGG < SRR4302533.3411711/94‑1 (MQ=60)
CTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGC < SRR4302533.5905131/94‑1 (MQ=60)
CTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGC < SRR4302533.783215/94‑1 (MQ=60)
GTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGA < SRR4302533.4939650/94‑1 (MQ=60)
TGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAG < SRR4302533.2094414/94‑1 (MQ=60)
TGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AG‑GGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGG < SRR4302533.2209829/94‑1 (MQ=60)
GAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGG < SRR4302533.6181372/94‑1 (MQ=60)
GAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGG < SRR4302533.1263784/94‑1 (MQ=60)
GAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGG < SRR4302533.1203344/94‑1 (MQ=60)
AGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGG < SRR4302533.1955426/94‑1 (MQ=60)
AGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGG < SRR4302533.1428717/94‑1 (MQ=60)
AGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGG < SRR4302533.4767577/94‑1 (MQ=60)
TAGCTATAGTTGCCAGGTCCGACCGGACCAGGCTGCGGCCGG‑‑GGGG‑‑GGGCGCTTTTCCCCctgcccccgcccctcacccgagccgggtcggggg > SRR4302533.2039659/1‑60 (MQ=52)
AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttgcccccccccccccccccccccccccccccggggggg > SRR4302533.2215940/1‑46 (MQ=60)
AGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccccccccaacccctcccccccggggggggggggg > SRR4302533.5062124/1‑46 (MQ=60)
CTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCG < SRR4302533.1599270/94‑1 (MQ=60)
TATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttcggccccgcaccctcccccccccccccccccgcgccgggc > SRR4302533.4314040/1‑43 (MQ=60)
TATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccccccccaccccccccccccagagggggggggggcgc > SRR4302533.2806930/1‑43 (MQ=60)
AGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATT < SRR4302533.2377193/94‑1 (MQ=60)
AGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttgccccccccccccactaccccccccggcgcggggcggcggcggt > SRR4302533.2544911/1‑40 (MQ=60)
GTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgctttttcccccccccccccaccccccccccccgggggggggggggcggggt > SRR4302533.1493646/1‑39 (MQ=60)
TTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGT < SRR4302533.3748104/94‑1 (MQ=60)
TGCCAGGTCCGACTGAAGCAGGCTGCGGG‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTG < SRR4302533.3962750/94‑1 (MQ=49)
GCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttctttctcccccccccaccctccccccacgccgcgaggggaccgggcgtccg > SRR4302533.1111681/1‑36 (MQ=60)
CCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttttgccccccccccacccactcccccccctgcggcggggggagacgttgta > SRR4302533.4791703/1‑35 (MQ=60)
GTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGggcgcttttcaccccccccccccccccccccccccccaaggaggggggagggagttttgaaca > SRR4302533.5640030/1‑31 (MQ=60)
CCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATT < SRR4302533.1630192/94‑1 (MQ=60)
CCGACCGGAGCAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATT < SRR4302533.336507/94‑1 (MQ=60)
CCGGAGCAGGCTGCGGC‑‑A‑‑GGGGGTGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTA < SRR4302533.344699/94‑1 (MQ=60)
CAGGCTGCGGC‑‑AGGGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAG < SRR4302533.5807640/94‑1 (MQ=60)
caggGGGG‑‑GGGCGCTTTTCCCCTCTCCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAG < SRR4302533.519249/90‑1 (MQ=60)
G‑‑GGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGTGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCT < SRR4302533.4465857/94‑1 (MQ=60)
ggGGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGC < SRR4302533.1973002/92‑1 (MQ=60)
G‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATA < SRR4302533.753449/94‑1 (MQ=60)
GGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACA < SRR4302533.4800219/94‑1 (MQ=60)
GCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACAG < SRR4302533.5950301/94‑1 (MQ=60)
GCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACAG < SRR4302533.2799924/94‑1 (MQ=60)
GCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACAG < SRR4302533.4712690/94‑1 (MQ=60)
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AACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGC‑‑A‑‑GGGG‑‑GGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGCAAATATTGTTACCCCAGCAACAAACAGGCTCATACAG > NC_000913/1349127‑1349313
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
