Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,351,962	C→T	R194H (CGT→CAT)	sapC ←	SapC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,351,962	0	C	T	100.0%	798.0 / NA	213	R194H (CGT→CAT)	sapC	SapC
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (101/112); total (101/112)

Only 100 of 215 total aligned reads displayed.

AGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACA  >  NC_000913/1351872‑1352051

 gTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATggg                                                                                        <  1:443714/93‑1 (MQ=255)

 gTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATggg                                                                                        <  1:5342478/93‑1 (MQ=255)

  tGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggc                                                                                       >  1:2917170/1‑93 (MQ=255)

   gcgcGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAACCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcg                                                                                      <  2:5398349/93‑1 (MQ=255)

   gcgcGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcg                                                                                      <  2:4928025/93‑1 (MQ=255)

   gcgcGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcg                                                                                      <  1:5369913/93‑1 (MQ=255)

   gcgcGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcg                                                                                      <  2:4411223/93‑1 (MQ=255)

   gcgcGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcg                                                                                      >  1:1969708/1‑93 (MQ=255)

    cgcgGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcgg                                                                                     <  2:2098229/93‑1 (MQ=255)

     gcgGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGggcggc                                                                                    <  2:2758025/93‑1 (MQ=255)

      cgGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGgcggcg                                                                                   >  1:409888/1‑93 (MQ=255)

      cgGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGgcggcg                                                                                   >  2:672526/1‑93 (MQ=255)

       gggTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGgcggcgt                                                                                  >  1:6157842/1‑92 (MQ=255)

       gggTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGa                                                                                  >  2:2924239/1‑93 (MQ=255)

       gggTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGa                                                                                  >  2:5557238/1‑93 (MQ=255)

        ggTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGAt                                                                                 <  2:5844984/93‑1 (MQ=255)

        ggTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGAt                                                                                 <  2:2213697/93‑1 (MQ=255)

         gTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATa                                                                                <  1:2247404/93‑1 (MQ=255)

          tGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATaa                                                                               >  2:4787255/1‑93 (MQ=255)

          tGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATaa                                                                               <  2:1557094/93‑1 (MQ=255)

           gATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAAc                                                                              <  2:2421168/93‑1 (MQ=255)

            aTCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACg                                                                             <  2:532196/93‑1 (MQ=255)

            aTCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACg                                                                             <  1:5861800/93‑1 (MQ=255)

              ctcGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTa                                                                           <  2:3635273/93‑1 (MQ=255)

                cGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTAct                                                                         >  2:326898/1‑93 (MQ=255)

                cGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTAct                                                                         <  1:4350566/93‑1 (MQ=255)

                 ggTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTActc                                                                        >  2:311880/1‑93 (MQ=255)

                   tGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCtt                                                                      >  1:5985298/1‑93 (MQ=255)

                     aCCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCtttt                                                                    >  1:6089795/1‑93 (MQ=255)

                     aCCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCtttt                                                                    <  2:1281418/93‑1 (MQ=255)

                     aCCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCtttt                                                                    >  1:5941722/1‑93 (MQ=255)

                       cAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTc                                                                  >  1:3006541/1‑93 (MQ=255)

                        aGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTcc                                                                 >  1:1308349/1‑93 (MQ=255)

                         gCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCa                                                                <  2:1898779/93‑1 (MQ=255)

                         gCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCa                                                                >  1:5147485/1‑93 (MQ=255)

                           ccGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGt                                                              <  1:5607567/93‑1 (MQ=255)

                            cggcggTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGtt                                                             >  1:482584/1‑93 (MQ=255)

                            cggcggTGATGTTTGCCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGtt                                                             <  1:183952/93‑1 (MQ=255)

                             ggcggTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTc                                                            <  1:6232877/93‑1 (MQ=255)

                              gcggTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCg                                                           <  2:6218532/93‑1 (MQ=255)

                              gcggTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCg                                                           >  1:497679/1‑93 (MQ=255)

                                ggTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTc                                                         >  1:1558447/1‑93 (MQ=255)

                                 gTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCa                                                        >  2:171896/1‑93 (MQ=255)

                                   gATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATg                                                      >  2:5836897/1‑93 (MQ=255)

                                    aTGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGc                                                     >  1:547884/1‑93 (MQ=255)

                                    aTGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGc                                                     <  1:3686648/93‑1 (MQ=255)

                                    aTGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGc                                                     >  1:3292767/1‑93 (MQ=255)

                                     tGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCa                                                    >  1:2268012/1‑93 (MQ=255)

                                       tttGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCAcc                                                  <  2:775003/93‑1 (MQ=255)

                                       tttGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCAcc                                                  <  1:806897/93‑1 (MQ=255)

                                          ggCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATg                                               <  2:4756758/93‑1 (MQ=255)

                                           gCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGc                                              <  1:505789/93‑1 (MQ=255)

                                           gCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGc                                              <  1:1186728/93‑1 (MQ=255)

                                           gCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGc                                              <  1:1145967/93‑1 (MQ=255)

                                              tCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGt                                           >  1:858458/1‑93 (MQ=255)

                                                acaGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTaa                                         >  1:693355/1‑93 (MQ=255)

                                                acaGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTaa                                         >  1:5001331/1‑93 (MQ=255)

                                                acaGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTaa                                         >  2:4713188/1‑93 (MQ=255)

                                                acaGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTaa                                         <  1:3367855/93‑1 (MQ=255)

                                                 caGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTaaa                                        <  2:2029097/93‑1 (MQ=255)

                                                  aGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAAt                                       >  1:1032058/1‑93 (MQ=255)

                                                  aGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAAt                                       >  1:1020347/1‑93 (MQ=255)

                                                   gCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATc                                      <  2:2185389/93‑1 (MQ=255)

                                                    cAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCg                                     <  1:1442388/93‑1 (MQ=255)

                                                      aaCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGaa                                   <  2:1812399/93‑1 (MQ=255)

                                                      aaCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGaa                                   <  2:3574592/93‑1 (MQ=255)

                                                      aaCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGaa                                   >  1:3092541/1‑93 (MQ=255)

                                                      aaCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGaa                                   <  1:2192204/93‑1 (MQ=255)

                                                      aaCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGaa                                   <  2:1064662/93‑1 (MQ=255)

                                                       aCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAAc                                  <  1:3220790/93‑1 (MQ=255)

                                                       aCCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTCTTCCAGTTCGTCATGCACCATGCTGTAAATCGAAc                                  <  1:6260713/93‑1 (MQ=255)

                                                        ccAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACg                                 >  1:978917/1‑93 (MQ=255)

                                                         cAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGt                                >  1:6145875/1‑93 (MQ=255)

                                                          agagAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTa                               >  1:2444460/1‑93 (MQ=255)

                                                          agagAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTa                               >  2:1182939/1‑93 (MQ=255)

                                                          agagAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTa                               >  2:3931891/1‑93 (MQ=255)

                                                          agagAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTa                               >  2:4188677/1‑93 (MQ=255)

                                                                tatTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAc                         <  1:3342065/93‑1 (MQ=255)

                                                                 atTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcg                        <  2:5182084/93‑1 (MQ=255)

                                                                 atTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcg                        >  2:1967253/1‑93 (MQ=255)

                                                                 atTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcg                        >  2:5001379/1‑93 (MQ=255)

                                                                  ttCAGCGTTTATGCTCCATCCAGATGGTCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcgc                       <  2:3306023/93‑1 (MQ=255)

                                                                  ttCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcgc                       <  2:2579512/93‑1 (MQ=255)

                                                                   tCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATTcgcg                      <  2:1344333/93‑1 (MQ=255)

                                                                   tCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcgcg                      >  2:5466298/1‑93 (MQ=255)

                                                                   tCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAcgcg                      >  2:3379689/1‑93 (MQ=255)

                                                                    cAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCCCCATGCTGTAAATCGAACGTACCATCCGCgg                     <  2:3675373/93‑1 (MQ=255)

                                                                      gCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTTCTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgca                   <  1:3152677/93‑1 (MQ=255)

                                                                      gCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgca                   >  2:635553/1‑93 (MQ=255)

                                                                        gTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgcagc                 >  2:3178995/1‑93 (MQ=255)

                                                                        gTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgcagc                 >  2:6067199/1‑93 (MQ=255)

                                                                           gATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAAt              <  1:1906088/93‑1 (MQ=255)

                                                                             tGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgc            >  2:6231640/1‑93 (MQ=255)

                                                                                gcCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccag         >  1:5766575/1‑93 (MQ=255)

                                                                                  cATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccagcc       >  2:5047382/1‑93 (MQ=255)

                                                                                   aTCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccagcca      <  1:2358340/93‑1 (MQ=255)

                                                                                   aTCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccagcca      >  2:2973995/1‑93 (MQ=255)

                                                                                    tCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGccagccag     <  2:5369876/93‑1 (MQ=255)

                                                                                       aGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACa  <  1:2546257/93‑1 (MQ=255)

                                                                                       aGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACa  <  1:4002594/93‑1 (MQ=255)

AGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACA  >  NC_000913/1351872‑1352051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAA  >  NC_000913/1351869‑1352055

GACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGAT                                                                                               <  SRR4302533.5735/94‑1 (MQ=60)

GACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGAT                                                                                               <  SRR4302533.2611839/94‑1 (MQ=60)

GACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGAT                                                                                               <  SRR4302533.2283341/94‑1 (MQ=60)

GACAGTGCGCGGGCGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGAT                                                                                               <  SRR4302533.3622616/94‑1 (MQ=60)

 ACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATG                                                                                              <  SRR4302533.5640986/94‑1 (MQ=60)

  CAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGG                                                                                             >  SRR4302533.2416612/1‑94 (MQ=60)

    GTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGC                                                                                           >  SRR4302533.2935053/1‑94 (MQ=60)

    GTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGC                                                                                           <  SRR4302533.446366/94‑1 (MQ=60)

    GTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGC                                                                                           <  SRR4302533.5374516/94‑1 (MQ=60)

     TGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCG                                                                                          <  SRR4302533.639109/94‑1 (MQ=60)

     TGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCG                                                                                          >  SRR4302533.1981754/1‑94 (MQ=60)

      GCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGG                                                                                         <  SRR4302533.5402177/94‑1 (MQ=60)

       GGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGC                                                                                        <  SRR4302533.1964123/94‑1 (MQ=60)

        GCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCG                                                                                       >  SRR4302533.412346/1‑94 (MQ=60)

         CGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGT                                                                                      >  SRR4302533.6194882/1‑94 (MQ=60)

           GGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATA                                                                                    <  SRR4302533.4406776/94‑1 (MQ=60)

            GTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAA                                                                                   <  SRR4302533.2261292/94‑1 (MQ=60)

               ATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGT                                                                                <  SRR4302533.5897242/94‑1 (MQ=60)

               ATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGT                                                                                <  SRR4302533.923027/94‑1 (MQ=60)

                   CGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTC                                                                            <  SRR4302533.2260853/94‑1 (MQ=60)

                   CGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTC                                                                            <  SRR4302533.4376820/94‑1 (MQ=60)

                     GTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTT                                                                          >  SRR4302533.6021545/1‑94 (MQ=60)

                       GACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTT                                                                        >  SRR4302533.6126605/1‑94 (MQ=60)

                       GACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTT                                                                        >  SRR4302533.5977654/1‑94 (MQ=60)

                        ACCAGCCCCGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTT                                                                       <  SRR4302533.1384248/94‑1 (MQ=60)

                         CCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTC                                                                      >  SRR4302533.3024931/1‑94 (MQ=60)

                          CAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCC                                                                     >  SRR4302533.3114179/1‑94 (MQ=60)

                          CAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCC                                                                     >  SRR4302533.1316203/1‑94 (MQ=60)

                           AGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCA                                                                    >  SRR4302533.5178589/1‑94 (MQ=60)

                            GCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAG                                                                   <  SRR4302533.1073228/94‑1 (MQ=60)

                             CCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGT                                                                  <  SRR4302533.3203879/94‑1 (MQ=60)

                              CCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTT                                                                 <  SRR4302533.1311159/94‑1 (MQ=60)

                              CCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTT                                                                 >  SRR4302533.485466/1‑94 (MQ=60)

                              CCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTT                                                                 <  SRR4302533.5641451/94‑1 (MQ=60)

                               CGGCGGTGATGTTTGCCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTC                                                                <  SRR4302533.185096/94‑1 (MQ=60)

                                GGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCG                                                               >  SRR4302533.500646/1‑94 (MQ=60)

                                GGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCG                                                               <  SRR4302533.6270200/94‑1 (MQ=60)

                                GGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCG                                                               >  SRR4302533.2279716/1‑94 (MQ=60)

                                 GCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGT                                                              <  SRR4302533.648949/94‑1 (MQ=60)

                                  CGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTC                                                             >  SRR4302533.1567832/1‑94 (MQ=60)

                                  CGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTC                                                             >  SRR4302533.1718554/1‑94 (MQ=60)

                                   GGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCA                                                            >  SRR4302533.5941782/1‑94 (MQ=60)

                                    GTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCAT                                                           <  SRR4302533.4990022/94‑1 (MQ=60)

                                     TGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATG                                                          >  SRR4302533.6282666/1‑94 (MQ=60)

                                     TGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATG                                                          >  SRR4302533.3196591/1‑94 (MQ=60)

                                      TATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGC                                                         <  SRR4302533.3369634/94‑1 (MQ=60)

                                      GATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGC                                                         >  SRR4302533.3313092/1‑94 (MQ=60)

                                      GATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGC                                                         >  SRR4302533.551136/1‑94 (MQ=60)

                                       ATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCA                                                        <  SRR4302533.3709307/94‑1 (MQ=60)

                                       ATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCA                                                        >  SRR4302533.2282042/1‑94 (MQ=60)

                                         GTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACC                                                      >  SRR4302533.6107267/1‑94 (MQ=60)

                                          TTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCA                                                     <  SRR4302533.811639/94‑1 (MQ=60)

                                          TTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCA                                                     >  SRR4302533.825538/1‑94 (MQ=60)

                                           TTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCAT                                                    <  SRR4302533.5271992/94‑1 (MQ=60)

                                            TGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATG                                                   >  SRR4302533.5913141/1‑94 (MQ=60)

                                            TGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATG                                                   <  SRR4302533.2475122/94‑1 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 >  SRR4302533.4010270/1‑94 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 <  SRR4302533.5074535/94‑1 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 <  SRR4302533.508791/94‑1 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 <  SRR4302533.1152806/94‑1 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 <  SRR4302533.1193849/94‑1 (MQ=60)

                                              GCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGCACTCTTTTTCCAGTTCGTCATGCACCATGCT                                                 >  SRR4302533.2449054/1‑94 (MQ=60)

                                               CATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTG                                                <  SRR4302533.5128500/94‑1 (MQ=60)

                                                ATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGT                                               >  SRR4302533.863485/1‑94 (MQ=60)

                                                  CACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAA                                             >  SRR4302533.2335208/1‑94 (MQ=60)

                                                  CACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAA                                             >  SRR4302533.697452/1‑94 (MQ=60)

                                                  CACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAA                                             >  SRR4302533.5031648/1‑94 (MQ=60)

                                                   ACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAA                                            <  SRR4302533.3388658/94‑1 (MQ=60)

                                                    CAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAAT                                           <  SRR4302533.538744/94‑1 (MQ=60)

                                                    CAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAAT                                           >  SRR4302533.1026341/1‑94 (MQ=60)

                                                    CAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAAT                                           >  SRR4302533.1038126/1‑94 (MQ=60)

                                                     AGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATC                                          <  SRR4302533.1567653/94‑1 (MQ=60)

                                                      GCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCG                                         <  SRR4302533.5817304/94‑1 (MQ=60)

                                                       CAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCGTGCACCATGCTGTAAATCGA                                        >  SRR4302533.4229453/1‑94 (MQ=60)

                                                       CAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGA                                        <  SRR4302533.1451089/94‑1 (MQ=60)

                                                        AAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAA                                       >  SRR4302533.3111555/1‑94 (MQ=60)

                                                         AACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAAC                                      <  SRR4302533.2205713/94‑1 (MQ=60)

                                                          ACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACG                                     <  SRR4302533.3240650/94‑1 (MQ=60)

                                                          ACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACG                                     >  SRR4302533.984658/1‑94 (MQ=60)

                                                          ACCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTCTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACG                                     <  SRR4302533.6298143/94‑1 (MQ=60)

                                                           CCAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGT                                    >  SRR4302533.6182877/1‑94 (MQ=60)

                                                            CAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTA                                   <  SRR4302533.5454702/94‑1 (MQ=60)

                                                            CAGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTA                                   >  SRR4302533.2459549/1‑94 (MQ=60)

                                                             AGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGCACGTAC                                  >  SRR4302533.4354682/1‑94 (MQ=60)

                                                             AGAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTAC                                  >  SRR4302533.3011492/1‑94 (MQ=60)

                                                              GAGAATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACC                                 >  SRR4302533.1032480/1‑94 (MQ=60)

                                                                  ATATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATAC                             >  SRR4302533.569964/1‑94 (MQ=60)

                                                                   TATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACG                            <  SRR4302533.5318060/94‑1 (MQ=60)

                                                                   TATTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACG                            <  SRR4302533.3362722/94‑1 (MQ=60)

                                                                     TTCAGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCG                          <  SRR4302533.6192938/94‑1 (MQ=60)

                                                                        AGCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCA                       <  SRR4302533.5011755/94‑1 (MQ=60)

                                                                         GCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTTCTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAG                      <  SRR4302533.3172057/94‑1 (MQ=60)

                                                                         GCGTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAG                      <  SRR4302533.1886098/94‑1 (MQ=60)

                                                                           GTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCA                    <  SRR4302533.767951/94‑1 (MQ=60)

                                                                           GTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCA                    >  SRR4302533.3055892/1‑94 (MQ=60)

                                                                           GTTGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCA                    <  SRR4302533.4058625/94‑1 (MQ=60)

                                                                             TGATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAAT                  >  SRR4302533.343446/1‑94 (MQ=60)

                                                                              GATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATG                 <  SRR4302533.1917715/94‑1 (MQ=60)

                                                                               ATGCGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGC                >  SRR4302533.6171678/1‑94 (MQ=60)

                                                                                  CGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAG             <  SRR4302533.5990977/94‑1 (MQ=60)

                                                                                  CGCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAG             >  SRR4302533.5801388/1‑94 (MQ=60)

                                                                                   GCCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGC            >  SRR4302533.6213086/1‑94 (MQ=60)

                                                                                    CCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCC           >  SRR4302533.5625490/1‑94 (MQ=60)

                                                                                    CCATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCC           >  SRR4302533.2154696/1‑94 (MQ=60)

                                                                                     CATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCA          >  SRR4302533.1844537/1‑94 (MQ=60)

                                                                                     CATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCA          >  SRR4302533.4789813/1‑94 (MQ=60)

                                                                                      ATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAG         <  SRR4302533.3327486/94‑1 (MQ=60)

                                                                                      ATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAG         <  SRR4302533.3264675/94‑1 (MQ=60)

                                                                                      ATCCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAG         <  SRR4302533.2372915/94‑1 (MQ=60)

                                                                                        CCAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGAC       >  SRR4302533.1162683/1‑94 (MQ=60)

                                                                                         CAGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACA      <  SRR4302533.2571292/94‑1 (MQ=60)

                                                                                          AGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAG     <  SRR4302533.2561924/94‑1 (MQ=60)

                                                                                          AGATGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAG     <  SRR4302533.4026967/94‑1 (MQ=60)

                                                                                             TGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAA  <  SRR4302533.3013768/94‑1 (MQ=60)

                                                                                             TGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAA  >  SRR4302533.574250/1‑94 (MQ=60)

GACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTTTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAA  >  NC_000913/1351869‑1352055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`