Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,448,839 |
G→A |
P179S (CCG→TCG) |
tynA ← |
copper amine oxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,448,839 | 0 | G | A | 100.0%
| 791.9
/ NA
| 216 | P179S (CCG→TCG) | tynA | copper amine oxidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (113/103); total (113/103) |
Only 100 of 226 total aligned reads displayed.
GTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTG > NC_000913/1448749‑1448927
|
gTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACt < 2:1017983/93‑1 (MQ=255)
gCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGt < 2:2474367/93‑1 (MQ=255)
ccAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTc > 2:4593246/1‑93 (MQ=255)
gaGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCa > 1:5943931/2‑93 (MQ=255)
cAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCa > 2:2623085/1‑93 (MQ=255)
aGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCaa < 1:1083596/93‑1 (MQ=255)
ggAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAAc > 1:1191906/1‑93 (MQ=255)
ggAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAAc < 1:4818465/93‑1 (MQ=255)
agagCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATATTGACGTCGGCTTTGCGCGACTGGTCAACCg < 1:226283/93‑1 (MQ=255)
agCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGgt > 2:2152614/1‑93 (MQ=255)
cAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGgttt < 1:5190836/93‑1 (MQ=255)
aGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGgtttg > 1:1747023/1‑93 (MQ=255)
gTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGTGCGACTGGTCAACCGgtttgt > 1:6250829/1‑93 (MQ=255)
tttGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGgtttgtt > 1:2499223/1‑93 (MQ=255)
tgttgtTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGtttt < 2:909841/93‑1 (MQ=255)
tgttgtTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGtttt > 1:5074336/1‑93 (MQ=255)
ttttGCAGATCCACCCCCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAgc < 1:630860/93‑1 (MQ=255)
ttttGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAgc < 2:1757617/93‑1 (MQ=255)
ttttGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAgc < 1:4650904/93‑1 (MQ=255)
tttGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAgcg < 2:1505321/93‑1 (MQ=255)
tGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCa < 1:4766665/93‑1 (MQ=255)
gCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCaa < 2:3040966/93‑1 (MQ=255)
cAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCaaa < 2:4949924/93‑1 (MQ=255)
aGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAAc < 2:5560250/93‑1 (MQ=255)
gATACACCAGCGCTTCGATAATATGTTTGCCGTCGACCATAATGGCGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACg < 2:2825977/93‑1 (MQ=255)
aTCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGc < 1:1983381/93‑1 (MQ=255)
ccaccaCCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGccc < 2:1910834/93‑1 (MQ=255)
accaccGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAg > 2:2971431/1‑93 (MQ=255)
ccaccGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGa > 1:3805522/1‑93 (MQ=255)
ccaccGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGa < 2:5258063/93‑1 (MQ=255)
caccGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGAc < 2:2683770/93‑1 (MQ=255)
cccGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACa < 2:3882690/92‑1 (MQ=255)
accGCTGCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACa < 1:243243/93‑1 (MQ=255)
cGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGc > 1:3114200/1‑93 (MQ=255)
cGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGc < 1:573705/93‑1 (MQ=255)
cGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGc < 2:5288686/93‑1 (MQ=255)
gCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGct > 1:3849915/1‑93 (MQ=255)
gCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGct > 2:2185799/1‑93 (MQ=255)
ttCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttc > 1:4947874/1‑93 (MQ=255)
tCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttct > 1:3083400/1‑93 (MQ=255)
tCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttct > 2:1827592/1‑93 (MQ=255)
cGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttctt > 1:4133658/1‑93 (MQ=255)
cGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttctt > 2:5172758/1‑93 (MQ=255)
cGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGcttctt < 2:5914135/93‑1 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt > 1:2970872/1‑93 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt > 2:1337082/1‑93 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt > 1:84201/1‑93 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt > 1:4589803/1‑93 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt < 1:1294239/93‑1 (MQ=255)
gatgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCttt < 1:4752194/93‑1 (MQ=255)
atgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTa > 2:6024619/1‑93 (MQ=255)
atgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTa < 2:3668188/93‑1 (MQ=255)
tgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAt > 2:4537394/1‑93 (MQ=255)
tgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAt < 1:4992862/93‑1 (MQ=255)
tgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAt > 1:5849004/1‑93 (MQ=255)
tgatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAt < 2:5469539/93‑1 (MQ=255)
gatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATc < 2:1540609/93‑1 (MQ=255)
gatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATc > 1:4377305/1‑93 (MQ=255)
gatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATc < 2:830146/93‑1 (MQ=255)
gatATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATc > 2:3935730/1‑93 (MQ=255)
tGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGc > 2:1146999/1‑93 (MQ=255)
tGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGc < 1:4641396/93‑1 (MQ=255)
gTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCg < 1:2808809/93‑1 (MQ=255)
ttGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGt < 1:3019028/93‑1 (MQ=255)
tGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTa < 2:5832671/93‑1 (MQ=255)
cGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCa > 2:4816619/1‑93 (MQ=255)
gTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAg > 1:1001006/1‑93 (MQ=255)
tCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAgg < 2:1653605/93‑1 (MQ=255)
cGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAggg > 1:5598608/1‑93 (MQ=255)
cGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAggg < 2:4014480/93‑1 (MQ=255)
gAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGga < 2:6112620/93‑1 (MQ=255)
gAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGga < 1:5210764/93‑1 (MQ=255)
gCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGgaga > 1:1483211/1‑93 (MQ=255)
cATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAt > 1:2108521/1‑93 (MQ=255)
aTAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAtc < 1:4488822/93‑1 (MQ=255)
tAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAtct > 1:3935380/1‑93 (MQ=255)
tAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAtct < 2:3222325/93‑1 (MQ=255)
aaTGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAtctc < 2:2777628/93‑1 (MQ=255)
aTGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCa < 1:2195657/93‑1 (MQ=255)
aTGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCa > 2:3289865/1‑93 (MQ=255)
gACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGt > 1:730901/1‑93 (MQ=255)
gACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGt > 2:4284786/1‑93 (MQ=255)
aCGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTa > 1:3971116/1‑93 (MQ=255)
tCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTaaaa < 2:5300387/93‑1 (MQ=255)
tCGGCTATGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTaaaa < 1:3333474/93‑1 (MQ=255)
ggCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACg > 1:1571365/1‑93 (MQ=255)
ggCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACg < 2:1413091/93‑1 (MQ=255)
ggCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACg < 2:3373314/93‑1 (MQ=255)
ggCTTGGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACg < 2:3153386/93‑1 (MQ=255)
gCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACgg > 2:3556228/1‑93 (MQ=255)
gCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACgg < 1:5445609/93‑1 (MQ=255)
cTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACggg < 1:3769138/93‑1 (MQ=255)
tttGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGt > 1:6059109/1‑93 (MQ=255)
tttGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGt < 2:2278044/93‑1 (MQ=255)
gtggcgcGACTGGGCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGt < 2:4395471/90‑1 (MQ=255)
ttGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTa < 2:719611/93‑1 (MQ=255)
tGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTAt < 1:1669471/93‑1 (MQ=255)
gcgcGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTAtt < 1:1923493/93‑1 (MQ=255)
cgcgACTGGTCAACCGGTTTTTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTg < 1:3166872/93‑1 (MQ=255)
cgcgACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTg < 1:6153299/93‑1 (MQ=255)
|
GTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTG > NC_000913/1448749‑1448927
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTT > NC_000913/1448747‑1448932
|
GGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGAC < SRR4302533.6326383/94‑1 (MQ=60)
GGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACT < SRR4302533.2453164/94‑1 (MQ=60)
GGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACT < SRR4302533.2384306/94‑1 (MQ=60)
GGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACT < SRR4302533.4651284/94‑1 (MQ=60)
GTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTG < SRR4302533.4622184/94‑1 (MQ=60)
TTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGG > SRR4302533.1720092/1‑94 (MQ=60)
TGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGT < SRR4302533.6260198/94‑1 (MQ=60)
CGAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCA > SRR4302533.5979879/1‑94 (MQ=60)
CAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAA > SRR4302533.3037319/1‑94 (MQ=60)
AGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAAC < SRR4302533.1089986/94‑1 (MQ=60)
AGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAAC > SRR4302533.1199066/1‑94 (MQ=60)
AGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAAC < SRR4302533.4573188/94‑1 (MQ=60)
GGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACC < SRR4302533.1032850/94‑1 (MQ=60)
GGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACC < SRR4302533.4847669/94‑1 (MQ=60)
GGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACC < SRR4302533.3842284/94‑1 (MQ=60)
GAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCG > SRR4302533.4992241/1‑94 (MQ=60)
AGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATATTGACGTCGGCTTTGCGCGACTGGTCAACCGG < SRR4302533.227694/94‑1 (MQ=60)
AGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGG > SRR4302533.1451769/1‑94 (MQ=60)
GCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTT < SRR4302533.6323782/94‑1 (MQ=60)
CAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTG > SRR4302533.1757655/1‑94 (MQ=60)
CAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTG < SRR4302533.5222153/94‑1 (MQ=60)
CAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTG < SRR4302533.2223180/94‑1 (MQ=60)
CAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTG > SRR4302533.6130173/1‑94 (MQ=60)
AGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGTGCGACTGGTCAACCGGTTTGT > SRR4302533.6288224/1‑94 (MQ=60)
AGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGT > SRR4302533.22570/1‑94 (MQ=60)
AGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGT > SRR4302533.2277320/1‑94 (MQ=60)
GTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTT > SRR4302533.2514640/1‑94 (MQ=60)
GTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTT > SRR4302533.2506948/1‑94 (MQ=60)
TTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTT > SRR4302533.5105010/1‑94 (MQ=60)
TGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTC > SRR4302533.522239/1‑94 (MQ=60)
GTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCC > SRR4302533.3802549/1‑94 (MQ=60)
TGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAG < SRR4302533.551468/94‑1 (MQ=60)
TTTTGCAGATCCACCCCCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCG < SRR4302533.634569/94‑1 (MQ=60)
TTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCG < SRR4302533.634570/94‑1 (MQ=60)
TTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCG < SRR4302533.4679083/94‑1 (MQ=60)
TTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCA > SRR4302533.4677017/1‑94 (MQ=60)
TGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAA < SRR4302533.4795566/94‑1 (MQ=60)
GATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGC < SRR4302533.5934522/94‑1 (MQ=60)
GATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGC < SRR4302533.5059672/94‑1 (MQ=60)
GATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGC > SRR4302533.1664410/1‑94 (MQ=60)
ATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCC < SRR4302533.1995519/94‑1 (MQ=60)
TCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCC > SRR4302533.4053436/1‑94 (MQ=60)
TCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCC > SRR4302533.1507406/1‑94 (MQ=60)
CACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAG > SRR4302533.657336/1‑94 (MQ=60)
ACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGA > SRR4302533.3828808/1‑94 (MQ=60)
CACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACA > SRR4302533.393264/1‑94 (MQ=60)
CACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACA > SRR4302533.3871339/1‑94 (MQ=60)
ACCGCTGCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAG < SRR4302533.244750/94‑1 (MQ=60)
CCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGC > SRR4302533.3133351/1‑94 (MQ=60)
CGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCT > SRR4302533.3873424/1‑94 (MQ=60)
CGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCT < SRR4302533.577088/94‑1 (MQ=60)
GCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTT < SRR4302533.2565887/94‑1 (MQ=60)
CTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTC > SRR4302533.4977833/1‑94 (MQ=60)
TTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCT > SRR4302533.3102355/1‑94 (MQ=60)
TTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCT > SRR4302533.6126022/1‑94 (MQ=60)
TTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCT < SRR4302533.566642/94‑1 (MQ=60)
TTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCT < SRR4302533.5179542/94‑1 (MQ=60)
TTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCT > SRR4302533.2951320/1‑94 (MQ=60)
TCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTT > SRR4302533.4158748/1‑94 (MQ=60)
CGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTT > SRR4302533.84737/1‑94 (MQ=60)
CGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTT > SRR4302533.4617604/1‑94 (MQ=60)
CGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTT < SRR4302533.1222580/94‑1 (MQ=60)
CGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTT > SRR4302533.2989039/1‑94 (MQ=60)
GATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTA < SRR4302533.4781006/94‑1 (MQ=60)
GATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTA > SRR4302533.1849559/1‑94 (MQ=60)
GATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTA < SRR4302533.1302032/94‑1 (MQ=60)
ATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTAT > SRR4302533.5884365/1‑94 (MQ=60)
TGATATGTTTGTCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATC > SRR4302533.3105315/1‑94 (MQ=60)
TGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATC < SRR4302533.1352741/94‑1 (MQ=60)
TGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATC > SRR4302533.3989251/1‑94 (MQ=60)
TGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATC > SRR4302533.4403732/1‑94 (MQ=60)
TGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATC < SRR4302533.5023132/94‑1 (MQ=60)
ATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTG > SRR4302533.4622298/1‑94 (MQ=60)
ATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGC < SRR4302533.5353344/94‑1 (MQ=60)
ATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGC < SRR4302533.2928756/94‑1 (MQ=60)
TGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCG < SRR4302533.4669516/94‑1 (MQ=60)
TGTTTGCCGTCGAGCATAATGACGTCGGCTTGGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGGCAGCTTCTTTATCTGGCG < SRR4302533.1856587/94‑1 (MQ=60)
GTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGG < SRR4302533.2826094/94‑1 (MQ=60)
TTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTA < SRR4302533.3037509/94‑1 (MQ=60)
CGTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAG > SRR4302533.1006850/1‑94 (MQ=60)
GTCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGCCAGCTTCTTTATCTGGCGGTAGCAGG > SRR4302533.1142836/1‑94 (MQ=60)
TCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGG > SRR4302533.5632433/1‑94 (MQ=60)
TCGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGG < SRR4302533.3788138/94‑1 (MQ=60)
CGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGA > SRR4302533.4784024/1‑94 (MQ=60)
CGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGA > SRR4302533.4250206/1‑94 (MQ=60)
CGAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGA < SRR4302533.820982/94‑1 (MQ=60)
GAGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAG < SRR4302533.5242149/94‑1 (MQ=60)
AGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGA > SRR4302533.1492165/1‑94 (MQ=60)
AGCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGA > SRR4302533.5717125/1‑94 (MQ=60)
GCATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGAT > SRR4302533.2121526/1‑94 (MQ=60)
ATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCT > SRR4302533.3959406/1‑94 (MQ=60)
ATAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCT < SRR4302533.4515995/94‑1 (MQ=60)
TAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTC < SRR4302533.3166058/94‑1 (MQ=60)
TAATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTC > SRR4302533.6047000/1‑94 (MQ=60)
ATGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAG < SRR4302533.2209186/94‑1 (MQ=60)
TGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGT > SRR4302533.735206/1‑94 (MQ=60)
TGACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGT > SRR4302533.5844425/1‑94 (MQ=60)
GACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTA > SRR4302533.3995302/1‑94 (MQ=60)
ACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCCAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAA > SRR4302533.4044665/1‑94 (MQ=60)
ACGTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGTTCTCAGTAA > SRR4302533.5148953/1‑94 (MQ=60)
GTCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAA > SRR4302533.4972327/1‑94 (MQ=60)
TCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAAC > SRR4302533.3079932/1‑94 (MQ=60)
TCGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAAC < SRR4302533.1997288/94‑1 (MQ=60)
TCGGCTATGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAAC < SRR4302533.3354072/94‑1 (MQ=60)
CGGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACG > SRR4302533.1580830/1‑94 (MQ=60)
GGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGG > SRR4302533.4796132/1‑94 (MQ=60)
GGCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGG > SRR4302533.4747675/1‑94 (MQ=60)
GCTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGG < SRR4302533.5478418/94‑1 (MQ=60)
CTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGT > SRR4302533.6095790/1‑94 (MQ=60)
CTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGT > SRR4302533.4430414/1‑94 (MQ=60)
CTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGT > SRR4302533.3213017/1‑94 (MQ=60)
CTTTGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGT < SRR4302533.3792247/94‑1 (MQ=60)
TGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATT > SRR4302533.4832459/1‑94 (MQ=60)
TGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATT < SRR4302533.1679556/94‑1 (MQ=60)
TGCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATT < SRR4302533.1936118/94‑1 (MQ=60)
GCGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTG < SRR4302533.1935229/94‑1 (MQ=60)
CGCGACTGGTCAACCGGTTTTTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGG < SRR4302533.3186357/94‑1 (MQ=60)
CGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGG < SRR4302533.6190329/94‑1 (MQ=60)
CGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGG < SRR4302533.2143183/94‑1 (MQ=60)
CGCGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGG < SRR4302533.315065/94‑1 (MQ=60)
CGACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGT < SRR4302533.631539/94‑1 (MQ=60)
ACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTT > SRR4302533.4019968/1‑94 (MQ=60)
ACTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTT < SRR4302533.3034522/94‑1 (MQ=60)
|
GGGTTGCCAGGAGAGCAGTTTGTTGTTTTGCAGATCCACCACCGCTTCGATGATATGTTTGCCGTCGAGCATAATGACGTCGGCTTTGCGCGGCTGGTCAACCGGTTTGTTTTCCAGCGCAAACGCCCAGACAGCTTCTTTATCTGGCGGTAGCAGGGAGATCTCAGTAAAACGGGTATTGGGTTT > NC_000913/1448747‑1448932
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
