Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,478,094	A→G	G311G (GGA→GGG)	b1410 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,478,094	0	A	G	100.0%	592.3 / NA	188	G311G (GGA→GGG)	b1410	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (99/89); total (99/89)

Only 100 of 197 total aligned reads displayed.

TTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGACCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCT  >  NC_000913/1478004‑1478183

tttATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGcc                                                                                         <  2:4615164/93‑1 (MQ=255)

tttATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGcc                                                                                         >  2:4963172/1‑93 (MQ=255)

 ttATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGccc                                                                                        <  1:1836176/93‑1 (MQ=255)

 ttATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGccc                                                                                        <  2:1637433/93‑1 (MQ=255)

  tataTGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCg                                                                                       >  2:642071/1‑93 (MQ=255)

  tataTGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCg                                                                                       >  1:1230938/1‑93 (MQ=255)

   atatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGt                                                                                      <  2:4452897/93‑1 (MQ=255)

    tatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTg                                                                                     >  1:6101173/1‑93 (MQ=255)

    tatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTg                                                                                     >  2:5820477/1‑93 (MQ=255)

    tatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTg                                                                                     >  1:1996905/1‑93 (MQ=255)

    tatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTg                                                                                     >  1:3857779/1‑93 (MQ=255)

    tatGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTg                                                                                     >  1:3491753/1‑93 (MQ=255)

     atGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGc                                                                                    >  2:1185496/1‑93 (MQ=255)

      tGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGcc                                                                                   >  1:4595487/1‑93 (MQ=255)

        cTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCAt                                                                                 <  1:4447706/93‑1 (MQ=255)

         tAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCAtt                                                                                >  2:3066015/1‑93 (MQ=255)

         tAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCAtt                                                                                >  1:987803/1‑93 (MQ=255)

         tAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCAtt                                                                                >  2:4020714/1‑93 (MQ=255)

          aaCAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTa                                                                               <  1:594037/93‑1 (MQ=255)

          aaCAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTa                                                                               >  2:4225967/1‑93 (MQ=255)

          aaCAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTa                                                                               <  2:6259590/93‑1 (MQ=255)

           aCAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTAt                                                                              <  1:3588370/93‑1 (MQ=255)

            cAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATc                                                                             >  1:187641/1‑93 (MQ=255)

            cAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATc                                                                             >  2:1684742/1‑93 (MQ=255)

              aaTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGc                                                                           >  1:2241551/1‑93 (MQ=255)

              aaTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGc                                                                           >  1:751415/1‑93 (MQ=255)

              aaTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGc                                                                           >  1:3978899/1‑93 (MQ=255)

               aTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGcc                                                                          <  1:529552/93‑1 (MQ=255)

               aTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGcc                                                                          <  1:3215799/93‑1 (MQ=255)

               aTCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGcc                                                                          <  2:110072/93‑1 (MQ=255)

                tCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCg                                                                         >  2:6086297/1‑93 (MQ=255)

                acGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCg                                                                         <  1:3708970/92‑1 (MQ=255)

                  gCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGt                                                                       <  2:4727236/93‑1 (MQ=255)

                    aaaaaTTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTg                                                                     >  1:4276930/1‑93 (MQ=255)

                         tttGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTa                                                                >  1:3644531/1‑93 (MQ=255)

                          ttGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAg                                                               >  2:2103672/1‑93 (MQ=255)

                           tGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGc                                                              <  1:5544375/93‑1 (MQ=255)

                            gATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCg                                                             >  1:5999301/1‑93 (MQ=255)

                             aTTATCATCATGAAGACTGCACAGGACTAGCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGt                                                            <  1:2787336/93‑1 (MQ=255)

                             aTTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGt                                                            >  1:853029/1‑93 (MQ=255)

                             aTTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGt                                                            >  1:5257884/1‑93 (MQ=255)

                             aTTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTGCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGt                                                            <  1:4554282/93‑1 (MQ=255)

                              ttATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTa                                                           >  1:4693263/1‑93 (MQ=255)

                               tATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTAt                                                          <  2:475953/93‑1 (MQ=255)

                                aTCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATc                                                         >  2:2172370/1‑93 (MQ=255)

                                 tCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTTGCGTATCg                                                        >  2:762815/1‑93 (MQ=255)

                                  cAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGc                                                       <  2:3839756/93‑1 (MQ=255)

                                      aTGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTa                                                   <  2:5325646/93‑1 (MQ=255)

                                      aTGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTa                                                   >  2:937508/1‑93 (MQ=255)

                                      aTGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTa                                                   <  1:3324335/93‑1 (MQ=255)

                                       tGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTAt                                                  >  1:490527/1‑93 (MQ=255)

                                         aaGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGc                                                <  1:2816826/93‑1 (MQ=255)

                                         aaGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGc                                                <  2:1167547/93‑1 (MQ=255)

                                          aGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCg                                               <  1:3130218/93‑1 (MQ=255)

                                          aGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCg                                               <  2:1517398/93‑1 (MQ=255)

                                           gACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGa                                              <  2:3758100/93‑1 (MQ=255)

                                             cTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGaaa                                            >  1:2194175/1‑93 (MQ=255)

                                              tGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAg                                           <  1:4510981/93‑1 (MQ=255)

                                               gCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAgg                                          <  2:5639910/93‑1 (MQ=255)

                                                 acaGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCg                                        >  1:3494191/1‑93 (MQ=255)

                                                 acaGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCg                                        >  1:4729084/1‑93 (MQ=255)

                                                 acaGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCg                                        <  1:6016243/93‑1 (MQ=255)

                                                 acaGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCg                                        >  2:2378807/1‑93 (MQ=255)

                                                   aGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGAt                                      >  1:6218472/1‑93 (MQ=255)

                                                   aGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGAt                                      <  1:3184266/93‑1 (MQ=255)

                                                    ggACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATg                                     >  2:3684592/1‑93 (MQ=255)

                                                    ggACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATg                                     >  2:2620004/1‑93 (MQ=255)

                                                       ccATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGaaa                                  <  1:2625123/93‑1 (MQ=255)

                                                       ccATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGaaa                                  <  1:632952/93‑1 (MQ=255)

                                                       ccATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGaaa                                  <  1:5807292/93‑1 (MQ=255)

                                                        cATCAGCGGATCGATGGCGGTTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAt                                 <  1:3887528/93‑1 (MQ=255)

                                                        cATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAt                                 >  1:2514750/1‑93 (MQ=255)

                                                         aTCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAtt                                >  1:3093842/1‑93 (MQ=255)

                                                          tCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTg                               >  2:3614841/1‑93 (MQ=255)

                                                          tCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTg                               >  1:1436418/1‑93 (MQ=255)

                                                          tCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTg                               <  1:5590195/93‑1 (MQ=255)

                                                            aGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGtt                             <  1:1563089/93‑1 (MQ=255)

                                                            aGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGtt                             <  1:4988082/93‑1 (MQ=255)

                                                             gCGGATCGATTGCGGCTACTTTCTGGGGGGCCCGTGCCATTATCGCCGGGTGATTTAGCGTATCGCTTTATGAGAAAGGCGATGAAATTGTTc                            >  2:1322014/1‑93 (MQ=255)

                                                               ggATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGCTTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCgg                          <  1:3390156/93‑1 (MQ=255)

                                                               ggATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCgg                          <  1:505764/93‑1 (MQ=255)

                                                                gATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCggg                         >  2:2152271/1‑93 (MQ=255)

                                                                gATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCggg                         >  2:144632/1‑93 (MQ=255)

                                                                 aTCGATGGCTGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGa                        <  1:1743862/93‑1 (MQ=255)

                                                                 aTCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGa                        >  2:5397653/1‑93 (MQ=255)

                                                                  tCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGAc                       >  1:6177889/1‑93 (MQ=255)

                                                                   cGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACg                      >  2:1904685/1‑93 (MQ=255)

                                                                   cGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACg                      <  1:4418335/93‑1 (MQ=255)

                                                                    gATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGGTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGc                     >  1:1197838/1‑93 (MQ=255)

                                                                      tGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCAc                   >  1:234511/1‑93 (MQ=255)

                                                                       ggcggcTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCAct                  <  1:1010885/93‑1 (MQ=255)

                                                                        gcggcTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCActc                 <  1:1017814/93‑1 (MQ=255)

                                                                          gtcgaCTGTCTGGTGGTCCCTTGCCATTATCGCCGGTGGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCGCTCtt               <  2:2027036/89‑1 (MQ=255)

                                                                           gcTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTc              >  1:1305053/1‑93 (MQ=255)

                                                                           gcTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTc              >  2:2905043/1‑93 (MQ=255)

                                                                            cTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCg             <  1:4798337/93‑1 (MQ=255)

                                                                             tACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCgg            >  2:5976901/1‑93 (MQ=255)

                                                                                  tCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTg       >  2:2341545/1‑93 (MQ=255)

                                                                                    tggtggGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCa     <  1:5413292/93‑1 (MQ=255)

                                                                                       tggGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCAtct  <  2:4140777/93‑1 (MQ=255)

TTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGACCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCT  >  NC_000913/1478004‑1478183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGACCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCTCGGA  >  NC_000913/1478001‑1478187

TCGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGG                                                                                               <  SRR4302533.3064091/94‑1 (MQ=60)

TCGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGG                                                                                               <  SRR4302533.2988522/94‑1 (MQ=60)

 CGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGC                                                                                              >  SRR4302533.3845087/1‑94 (MQ=60)

 CGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGC                                                                                              <  SRR4302533.6174322/94‑1 (MQ=60)

    TTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCG                                                                                           >  SRR4302533.1238308/1‑94 (MQ=60)

    TTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCG                                                                                           >  SRR4302533.1880685/1‑94 (MQ=60)

    TTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCG                                                                                           <  SRR4302533.1847377/94‑1 (MQ=60)

     TATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGT                                                                                          >  SRR4302533.3499773/1‑94 (MQ=60)

      ATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTG                                                                                         >  SRR4302533.3513287/1‑94 (MQ=60)

      ATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTG                                                                                         >  SRR4302533.3881335/1‑94 (MQ=60)

      ATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTG                                                                                         >  SRR4302533.6138012/1‑94 (MQ=60)

      ATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTG                                                                                         >  SRR4302533.2009187/1‑94 (MQ=60)

        ATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGCGTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCC                                                                                       >  SRR4302533.5139952/1‑94 (MQ=60)

        ATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCC                                                                                       >  SRR4302533.4623326/1‑94 (MQ=60)

         TGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCA                                                                                      >  SRR4302533.4693702/1‑94 (MQ=60)

          GCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCAT                                                                                     <  SRR4302533.5190854/94‑1 (MQ=60)

           CTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATT                                                                                    <  SRR4302533.4474604/94‑1 (MQ=60)

           CTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATT                                                                                    >  SRR4302533.1303919/1‑94 (MQ=60)

           CTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATT                                                                                    >  SRR4302533.993582/1‑94 (MQ=60)

            TAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTA                                                                                   >  SRR4302533.613579/1‑94 (MQ=60)

             AACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTAT                                                                                  <  SRR4302533.597540/94‑1 (MQ=60)

             AACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTAT                                                                                  >  SRR4302533.4479568/1‑94 (MQ=60)

             AACAAAACGCAAAAATTTGATTATCAGCATGAAGACTGCACAGAACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTAT                                                                                  <  SRR4302533.5357966/94‑1 (MQ=60)

              ACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATC                                                                                 <  SRR4302533.3610466/94‑1 (MQ=60)

              ACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATC                                                                                 <  SRR4302533.6047323/94‑1 (MQ=60)

              ACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATC                                                                                 >  SRR4302533.188809/1‑94 (MQ=60)

               CAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCG                                                                                >  SRR4302533.3324666/1‑94 (MQ=60)

                AAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGC                                                                               >  SRR4302533.2255407/1‑94 (MQ=60)

                AAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGC                                                                               >  SRR4302533.4003123/1‑94 (MQ=60)

                AAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGC                                                                               >  SRR4302533.755841/1‑94 (MQ=60)

                AAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGC                                                                               >  SRR4302533.1988977/1‑94 (MQ=60)

                 AATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATGGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCC                                                                              <  SRR4302533.4581925/94‑1 (MQ=60)

                 AATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCC                                                                              <  SRR4302533.5006223/94‑1 (MQ=60)

                 AATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCC                                                                              <  SRR4302533.653120/94‑1 (MQ=60)

                  ATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCG                                                                             <  SRR4302533.532701/94‑1 (MQ=60)

                  ATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCG                                                                             <  SRR4302533.3235625/94‑1 (MQ=60)

                   ACGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGG                                                                            <  SRR4302533.3731751/94‑1 (MQ=60)

                     GCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTT                                                                          >  SRR4302533.3611992/1‑94 (MQ=60)

                      CAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTG                                                                         <  SRR4302533.4545616/94‑1 (MQ=60)

                      CAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTG                                                                         >  SRR4302533.4302651/1‑94 (MQ=60)

                       AAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGA                                                                        >  SRR4302533.3219071/1‑94 (MQ=60)

                        AAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGAT                                                                       >  SRR4302533.6248540/1‑94 (MQ=60)

                           ATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTA                                                                    >  SRR4302533.3666939/1‑94 (MQ=60)

                              TGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCG                                                                 >  SRR4302533.6035638/1‑94 (MQ=60)

                              TGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCG                                                                 <  SRR4302533.5577860/94‑1 (MQ=60)

                               GATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGT                                                                <  SRR4302533.3392417/94‑1 (MQ=60)

                               GATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGT                                                                >  SRR4302533.858023/1‑94 (MQ=60)

                               GATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGT                                                                >  SRR4302533.5289455/1‑94 (MQ=60)

                                ATTATCATCATGAAGACTGCACAGGACTAGCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTA                                                               <  SRR4302533.2804462/94‑1 (MQ=60)

                                ATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTA                                                               >  SRR4302533.4721705/1‑94 (MQ=60)

                                ATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTGCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTA                                                               <  SRR4302533.4581902/94‑1 (MQ=60)

                                 TTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTAT                                                              <  SRR4302533.4734730/94‑1 (MQ=60)

                                  TATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATC                                                             >  SRR4302533.5870325/1‑94 (MQ=60)

                                   ATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCG                                                            <  SRR4302533.999541/94‑1 (MQ=60)

                                   ATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCG                                                            <  SRR4302533.2595267/94‑1 (MQ=60)

                                   ATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCG                                                            <  SRR4302533.119655/94‑1 (MQ=60)

                                      AGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTT                                                         >  SRR4302533.3892903/1‑94 (MQ=60)

                                       GCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTT                                                        <  SRR4302533.3516197/94‑1 (MQ=60)

                                         ATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTAT                                                      <  SRR4302533.3344869/94‑1 (MQ=60)

                                         ATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTAT                                                      >  SRR4302533.493459/1‑94 (MQ=60)

                                            AAGACTGCACAGGACGATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCG                                                   <  SRR4302533.5296549/94‑1 (MQ=60)

                                            AAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCG                                                   <  SRR4302533.2834166/94‑1 (MQ=60)

                                             AGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGA                                                  >  SRR4302533.4864994/1‑94 (MQ=60)

                                             AGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGA                                                  <  SRR4302533.3149465/94‑1 (MQ=60)

                                              GACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAA                                                 >  SRR4302533.4773234/1‑94 (MQ=60)

                                               ACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAA                                                <  SRR4302533.5730411/94‑1 (MQ=60)

                                               ACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAA                                                >  SRR4302533.2207698/1‑94 (MQ=60)

                                                CTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAG                                               >  SRR4302533.2478681/1‑94 (MQ=60)

                                                CTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAG                                               <  SRR4302533.28671/94‑1 (MQ=60)

                                                CTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAG                                               <  SRR4302533.3788590/94‑1 (MQ=60)

                                                 TGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGG                                              <  SRR4302533.4538299/94‑1 (MQ=60)

                                                  GCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGC                                             <  SRR4302533.4002799/94‑1 (MQ=60)

                                                  GCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGC                                             <  SRR4302533.2200631/94‑1 (MQ=60)

                                                   CACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCG                                            >  SRR4302533.3515743/1‑94 (MQ=60)

                                                   CACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCG                                            >  SRR4302533.3515744/1‑94 (MQ=60)

                                                   CACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCG                                            >  SRR4302533.4757754/1‑94 (MQ=60)

                                                    ACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGA                                           >  SRR4302533.1762724/1‑94 (MQ=60)

                                                    ACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGA                                           <  SRR4302533.6052699/94‑1 (MQ=60)

                                                     CAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGAT                                          >  SRR4302533.6255757/1‑94 (MQ=60)

                                                      AGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATG                                         <  SRR4302533.3203852/94‑1 (MQ=60)

                                                       GGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGA                                        >  SRR4302533.5599837/1‑94 (MQ=60)

                                                       GGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGA                                        <  SRR4302533.3672092/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     <  SRR4302533.2641231/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     <  SRR4302533.5842358/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     <  SRR4302533.5986363/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     <  SRR4302533.4441936/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     <  SRR4302533.636677/94‑1 (MQ=60)

                                                          CCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAAT                                     >  SRR4302533.2530245/1‑94 (MQ=60)

                                                           CATCAGCGGATCGATGGCGGTTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATT                                    <  SRR4302533.3911245/94‑1 (MQ=60)

                                                           CATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATT                                    >  SRR4302533.3112864/1‑94 (MQ=60)

                                                           CATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATT                                    >  SRR4302533.5556298/1‑94 (MQ=60)

                                                            ATCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTG                                   >  SRR4302533.1445092/1‑94 (MQ=60)

                                                             TCAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGT                                  <  SRR4302533.5623966/94‑1 (MQ=60)

                                                              CAGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTT                                 <  SRR4302533.317200/94‑1 (MQ=60)

                                                               AGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTC                                <  SRR4302533.5018327/94‑1 (MQ=60)

                                                               AGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTC                                <  SRR4302533.1572499/94‑1 (MQ=60)

                                                               AGCGGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTC                                >  SRR4302533.1543617/1‑94 (MQ=60)

                                                                  GGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGCTTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGG                             <  SRR4302533.3411092/94‑1 (MQ=60)

                                                                  GGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGG                             <  SRR4302533.795402/94‑1 (MQ=60)

                                                                  GGATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGG                             <  SRR4302533.508766/94‑1 (MQ=60)

                                                                   GATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGA                            <  SRR4302533.274310/94‑1 (MQ=60)

                                                                   GATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGA                            >  SRR4302533.2827901/1‑94 (MQ=60)

                                                                    ATCGATGGCTGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGAC                           <  SRR4302533.1754466/94‑1 (MQ=60)

                                                                    ATCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGAC                           >  SRR4302533.6215000/1‑94 (MQ=60)

                                                                     TCGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACG                          <  SRR4302533.2244218/94‑1 (MQ=60)

                                                                      CGATGGCGGCTGCTTTCTGGTGGGGCCGTGCCATTATCGCCGGTTGATTTAGCGTATAGCTTTATGCGAAAGGTGATGAAATTGTTCGGGACGC                         >  SRR4302533.3135911/1‑94 (MQ=60)

                                                                      CGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGC                         >  SRR4302533.5027749/1‑94 (MQ=60)

                                                                      CGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGC                         <  SRR4302533.4445048/94‑1 (MQ=60)

                                                                      CGATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGGTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGC                         >  SRR4302533.1205035/1‑94 (MQ=60)

                                                                       GATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCA                        >  SRR4302533.905316/1‑94 (MQ=60)

                                                                       GATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCA                        >  SRR4302533.6187410/1‑94 (MQ=60)

                                                                        ATGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCAC                       >  SRR4302533.235959/1‑94 (MQ=60)

                                                                         TGGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACT                      <  SRR4302533.2335517/94‑1 (MQ=60)

                                                                          GGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTC                     <  SRR4302533.1016799/94‑1 (MQ=60)

                                                                          GGCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTC                     >  SRR4302533.1334440/1‑94 (MQ=60)

                                                                           GCGGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCT                    <  SRR4302533.1023797/94‑1 (MQ=60)

                                                                             GGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTC                  >  SRR4302533.1312898/1‑94 (MQ=60)

                                                                             GGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTC                  <  SRR4302533.6262313/94‑1 (MQ=60)

                                                                             GGCTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTC                  >  SRR4302533.1657968/1‑94 (MQ=60)

                                                                               CTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGG                <  SRR4302533.4827400/94‑1 (MQ=60)

                                                                               CTACTTTCTGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGG                >  SRR4302533.4195820/1‑94 (MQ=60)

                                                                                       TGGTGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCAT        <  SRR4302533.5445843/94‑1 (MQ=60)

                                                                                          TGGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCTC     <  SRR4302533.1237579/94‑1 (MQ=60)

                                                                                           GGGCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCTCG    <  SRR4302533.24672/94‑1 (MQ=60)

                                                                                             GCCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCTCGGA  >  SRR4302533.2048041/1‑94 (MQ=60)

TCGTTTATATGCTAACAAATCGCAAAAATTTGATTATCAGCATGAAGACTGCACAGGACCATCAGCGGATCGATGGCGGCTACTTTCTGGTGGACCCGTGCCATTATCGCCGGTTGATTTAGCGTATCGCTTTATGCGAAAGGCGATGAAATTGTTCGGGACGCACTCTTCGGGCCTGCATCTCGGA  >  NC_000913/1478001‑1478187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`