Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,572,526	T→C	D234G (GAC→GGC)	pqqL ←	putative peptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,572,526	0	T	C	99.6%	735.3 / NA	226	D234G (GAC→GGC)	pqqL	putative peptidase
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (123/102); total (124/102)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 230 total aligned reads displayed.

GCTTTTGTCGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGTCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCG  >  NC_000913/1572436‑1572615

gCTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCg                                                                                         >  1:1065577/1‑93 (MQ=255)

 cTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGa                                                                                        <  2:2425362/93‑1 (MQ=255)

 cTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGa                                                                                        <  2:4996444/93‑1 (MQ=255)

  ttttGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGat                                                                                       >  1:5669410/1‑93 (MQ=255)

  ttttGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGat                                                                                       >  1:3460350/1‑93 (MQ=255)

  ttttGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGat                                                                                       >  2:1142279/1‑93 (MQ=255)

  ttttGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGat                                                                                       >  1:2976289/1‑93 (MQ=255)

    ttgttgGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGatat                                                                                     >  1:2398829/1‑93 (MQ=255)

       ttggCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGc                                                                                  <  2:2309443/91‑1 (MQ=255)

         ggCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCg                                                                                >  1:4797724/1‑93 (MQ=255)

         ggCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCg                                                                                >  2:1646352/1‑93 (MQ=255)

           ccAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGAc                                                                              >  1:6254891/1‑93 (MQ=255)

              gACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCAc                                                                           <  2:37687/93‑1 (MQ=255)

               aCGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACg                                                                          >  1:5744248/1‑93 (MQ=255)

                cgcgATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGa                                                                         <  2:3120793/93‑1 (MQ=255)

                cgcgATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGa                                                                         >  2:2265260/1‑93 (MQ=255)

                 ggggttttCAGCTACTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGAt                                                                        >  2:6063715/5‑93 (MQ=255)

                 gcgATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGAt                                                                        >  2:5698917/1‑93 (MQ=255)

                  cgATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATa                                                                       >  2:2648463/1‑93 (MQ=255)

                  cgATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATa                                                                       <  1:1938658/93‑1 (MQ=255)

                   gATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATaa                                                                      >  1:2127174/1‑93 (MQ=255)

                    aTTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATaaa                                                                     <  1:1615111/93‑1 (MQ=255)

                    aTTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATaaa                                                                     <  1:5785999/93‑1 (MQ=255)

                     ttttCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAg                                                                    >  2:5908497/1‑93 (MQ=255)

                      tttCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAgg                                                                   <  2:653052/93‑1 (MQ=255)

                         cAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCGAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCa                                                                <  2:5305337/93‑1 (MQ=255)

                         cAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCa                                                                <  1:1191453/93‑1 (MQ=255)

                           gctgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCata                                                              <  2:846768/93‑1 (MQ=255)

                            ctgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCatat                                                             >  2:2090797/1‑93 (MQ=255)

                             tgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGCTGAAGGTCAtatt                                                            >  1:2008105/1‑93 (MQ=255)

                             tgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAtatt                                                            <  2:4586735/93‑1 (MQ=255)

                             tgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAtatt                                                            <  1:4625861/93‑1 (MQ=255)

                             tgctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAtatt                                                            <  2:2221341/93‑1 (MQ=255)

                              gctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAtatta                                                           >  1:5060413/1‑93 (MQ=255)

                              gctTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAtatta                                                           >  2:1399241/1‑93 (MQ=255)

                                tttGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATattatt                                                         >  1:5830033/1‑93 (MQ=255)

                                tttGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATattatt                                                         <  1:3575909/93‑1 (MQ=255)

                                tttGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATattatt                                                         <  1:3692730/93‑1 (MQ=255)

                                 ttGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTAttt                                                        <  2:3595707/93‑1 (MQ=255)

                                   gTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTgg                                                      <  2:254042/93‑1 (MQ=255)

                                       gCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGa                                                  >  1:4005101/1‑93 (MQ=255)

                                       gCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGa                                                  <  2:2139620/93‑1 (MQ=255)

                                       gCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGa                                                  <  1:3837903/93‑1 (MQ=255)

                                         cGGAAGCTTACTTAAATTATCCTTTATAAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATa                                                >  1:1876129/1‑93 (MQ=255)

                                          ggAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAc                                               >  2:5277090/1‑93 (MQ=255)

                                           gAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAcc                                              >  1:3169072/1‑93 (MQ=255)

                                           gAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAcc                                              >  2:786191/1‑93 (MQ=255)

                                           gAAGCTTACTTAAATTATCCTTTATAAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAcc                                              >  1:4555762/1‑93 (MQ=255)

                                            aaGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCa                                             <  2:485225/93‑1 (MQ=255)

                                            aaGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCa                                             >  2:2998215/1‑93 (MQ=255)

                                             aGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAg                                            >  1:629142/1‑93 (MQ=255)

                                             aGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAg                                            <  2:6199811/93‑1 (MQ=255)

                                             aGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAg                                            >  2:6185370/1‑93 (MQ=255)

                                              gCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGc                                           <  2:4927270/93‑1 (MQ=255)

                                                ttacttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGt                                         >  1:6118635/1‑93 (MQ=255)

                                                ttacttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGt                                         >  1:597948/1‑93 (MQ=255)

                                                ttacttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGt                                         <  1:2805003/93‑1 (MQ=255)

                                                 tacttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGtt                                        <  1:3927835/93‑1 (MQ=255)

                                                  tcttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGCCCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTg                                       <  2:3932170/92‑1 (MQ=255)

                                                   cttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGa                                      >  1:4278022/1‑93 (MQ=255)

                                                    ttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAt                                     >  2:1562261/1‑93 (MQ=255)

                                                    ttaAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAt                                     <  1:1365774/93‑1 (MQ=255)

                                                       aaTTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATaaa                                  >  2:2495350/1‑93 (MQ=255)

                                                       aaTTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATaaa                                  <  2:5608569/93‑1 (MQ=255)

                                                        aTTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATaaaa                                 <  2:4336870/93‑1 (MQ=255)

                                                        aTTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATaaaa                                 >  1:5302538/1‑93 (MQ=255)

                                                          tATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAAtt                               <  1:1109615/93‑1 (MQ=255)

                                                           aTCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTg                              <  1:3663216/93‑1 (MQ=255)

                                                           aTCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTg                              <  1:4791321/93‑1 (MQ=255)

                                                            tCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTgg                             >  1:3345873/1‑93 (MQ=255)

                                                             ccTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGgc                            <  2:4172022/93‑1 (MQ=255)

                                                               tttATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGgcgc                          >  1:4439441/1‑93 (MQ=255)

                                                               tttATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGgcgc                          <  1:1000016/93‑1 (MQ=255)

                                                                    cagcgccagcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATtg                     <  1:862626/93‑1 (MQ=255)

                                                                     agcgccagcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATtgt                    >  2:5205905/1‑93 (MQ=255)

                                                                      gcgccagcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATtgtg                   >  2:35160/1‑93 (MQ=255)

                                                                        gccagcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGcc                 <  1:5914904/93‑1 (MQ=255)

                                                                         ccagcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGcct                <  2:1866831/93‑2 (MQ=255)

                                                                          cagcgcTTCTTTACTGCCGATATAGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCgg               <  1:5376467/93‑1 (MQ=255)

                                                                           agcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCggg              >  2:1096930/1‑92 (MQ=255)

                                                                           agcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGgt              >  2:2498272/1‑93 (MQ=255)

                                                                           agcgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGgt              <  2:1183340/93‑1 (MQ=255)

                                                                             cgcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGgtgt            >  2:2007037/1‑93 (MQ=255)

                                                                             cgcTTCTCTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGgtgt            <  2:3331854/93‑1 (MQ=255)

                                                                              gcTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGtgtg           >  1:25357/1‑93 (MQ=255)

                                                                               cttcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGa          >  2:3241937/1‑93 (MQ=255)

                                                                                ttcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGAc         >  1:2572239/1‑93 (MQ=255)

                                                                                ttcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGAc         <  1:3038891/93‑1 (MQ=255)

                                                                                ttcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGAc         <  1:5422243/93‑1 (MQ=255)

                                                                                 tcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGAcc        >  1:912671/1‑93 (MQ=255)

                                                                                 tcttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTAGCGCAATTGTGCCGGTGTGAcc        >  1:2481421/1‑93 (MQ=255)

                                                                                  cttTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCg       >  1:4712837/1‑93 (MQ=255)

                                                                                    ttACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTg     >  1:2304261/1‑93 (MQ=255)

                                                                                    ttACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTg     <  1:1462483/93‑1 (MQ=255)

                                                                                      aCTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGc   <  1:2547851/93‑1 (MQ=255)

                                                                                      aCTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGc   <  1:784612/93‑1 (MQ=255)

                                                                                      aCTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGc   >  1:6231845/1‑93 (MQ=255)

                                                                                       cTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCg  >  1:2346916/1‑93 (MQ=255)

                                                                                       cTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCg  <  2:2945923/93‑1 (MQ=255)

                                                                                       cTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCg  >  2:5785262/1‑93 (MQ=255)

GCTTTTGTCGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGTCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCG  >  NC_000913/1572436‑1572615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGGCTTTTGTCGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGTCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCGACA  >  NC_000913/1572433‑1572618

TCGGCTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGC                                                                                              >  SRR4302533.1955695/1‑94 (MQ=60)

 CGGCTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCC                                                                                             >  SRR4302533.5622332/1‑94 (MQ=60)

  GGCTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCG                                                                                            >  SRR4302533.1071835/1‑94 (MQ=60)

   GCTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGA                                                                                           >  SRR4302533.2582230/1‑94 (MQ=60)

    CTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGAT                                                                                          >  SRR4302533.3481710/1‑94 (MQ=60)

    CTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGAT                                                                                          >  SRR4302533.5703654/1‑94 (MQ=60)

    CTTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGAT                                                                                          >  SRR4302533.2994500/1‑94 (MQ=60)

     TTTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATA                                                                                         <  SRR4302533.92336/94‑1 (MQ=60)

      TTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATAT                                                                                        <  SRR4302533.4732577/94‑1 (MQ=60)

      TTTGTTGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATAT                                                                                        >  SRR4302533.2413641/1‑94 (MQ=60)

           TGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCG                                                                                   >  SRR4302533.2568965/1‑94 (MQ=60)

           TGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCG                                                                                   >  SRR4302533.1589851/1‑94 (MQ=60)

           TGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCG                                                                                   >  SRR4302533.4826785/1‑94 (MQ=60)

           TGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCG                                                                                   >  SRR4302533.5195527/1‑94 (MQ=60)

           TGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCG                                                                                   <  SRR4302533.5889231/94‑1 (MQ=60)

            GGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGA                                                                                  >  SRR4302533.2667696/1‑94 (MQ=60)

            GACCAGACGCGTTTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCTTTTATCAGCGCCAGCGCTCCTTTACTGCCGATATCGCCGA                                                                                  <  SRR4302533.5809669/94‑1 (MQ=60)

             GCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGAC                                                                                 >  SRR4302533.6292299/1‑94 (MQ=60)

              CCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACC                                                                                >  SRR4302533.6058358/1‑94 (MQ=60)

                 GACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACG                                                                             >  SRR4302533.5778909/1‑94 (MQ=60)

                 GACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACG                                                                             >  SRR4302533.4001671/1‑94 (MQ=60)

                  ACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGA                                                                            >  SRR4302533.206213/1‑94 (MQ=60)

                    GCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATA                                                                          >  SRR4302533.1374347/1‑94 (MQ=60)

                     CGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAA                                                                         >  SRR4302533.2140292/1‑94 (MQ=60)

                     CGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAA                                                                         <  SRR4302533.1950480/94‑1 (MQ=60)

                       ATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAG                                                                       <  SRR4302533.1624904/94‑1 (MQ=60)

                       ATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAG                                                                       >  SRR4302533.5860651/1‑94 (MQ=60)

                       ATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAG                                                                       <  SRR4302533.5820947/94‑1 (MQ=60)

                           TCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCA                                                                   <  SRR4302533.1945799/94‑1 (MQ=60)

                           TCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCA                                                                   >  SRR4302533.5570740/1‑94 (MQ=60)

                            CAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCAT                                                                  <  SRR4302533.1198611/94‑1 (MQ=60)

                             AGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATA                                                                 >  SRR4302533.111362/1‑94 (MQ=60)

                             AGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATA                                                                 <  SRR4302533.4434125/94‑1 (MQ=60)

                              GCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATAT                                                                <  SRR4302533.2553728/94‑1 (MQ=60)

                              GCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATAT                                                                <  SRR4302533.5377918/94‑1 (MQ=60)

                               CTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGCTGAAGGTCATATT                                                               >  SRR4302533.2020475/1‑94 (MQ=60)

                               CTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATT                                                               >  SRR4302533.2020474/1‑94 (MQ=60)

                                TGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGTCGATATCGCCGACCACGATAAAGGTCATATTA                                                              >  SRR4302533.93110/1‑94 (MQ=60)

                                TGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTA                                                              <  SRR4302533.4653897/94‑1 (MQ=60)

                                TGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTA                                                              >  SRR4302533.5090990/1‑94 (MQ=60)

                                TGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTA                                                              >  SRR4302533.580929/1‑94 (MQ=60)

                                TGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTA                                                              <  SRR4302533.2272859/94‑1 (MQ=60)

                                  CTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATT                                                            >  SRR4302533.5865265/1‑94 (MQ=60)

                                  CTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATT                                                            >  SRR4302533.5438077/1‑94 (MQ=60)

                                   TTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTT                                                           <  SRR4302533.3715416/94‑1 (MQ=60)

                                   TTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTT                                                           <  SRR4302533.3597949/94‑1 (MQ=60)

                                    TTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTG                                                          >  SRR4302533.5822091/1‑94 (MQ=60)

                                    TTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTG                                                          <  SRR4302533.3895568/94‑1 (MQ=60)

                                        TAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTG                                                      >  SRR4302533.906363/1‑94 (MQ=60)

                                         AGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGA                                                     <  SRR4302533.6319697/94‑1 (MQ=60)

                                         AGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGA                                                     >  SRR4302533.4029482/1‑94 (MQ=60)

                                          GCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGAT                                                    <  SRR4302533.3861351/94‑1 (MQ=60)

                                           CCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATA                                                   <  SRR4302533.4675702/94‑1 (MQ=60)

                                           CCGGAAGCTTACTTAAATTATCCTTTATAAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATA                                                   >  SRR4302533.1887564/1‑94 (MQ=60)

                                            CGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAC                                                  >  SRR4302533.1024700/1‑94 (MQ=60)

                                            CGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAC                                                  >  SRR4302533.2542504/1‑94 (MQ=60)

                                            CGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATAC                                                  >  SRR4302533.2089328/1‑94 (MQ=60)

                                             GGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACC                                                 >  SRR4302533.3188574/1‑94 (MQ=60)

                                             GGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACC                                                 <  SRR4302533.4791672/94‑1 (MQ=60)

                                             GGAAGCTTACTTAAATTATCCTTTATAAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACC                                                 >  SRR4302533.4583394/1‑94 (MQ=60)

                                              GAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCA                                                <  SRR4302533.3683464/94‑1 (MQ=60)

                                              GAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCA                                                >  SRR4302533.2466174/1‑94 (MQ=60)

                                               AAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAG                                               >  SRR4302533.1357686/1‑94 (MQ=60)

                                               AAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAG                                               >  SRR4302533.632843/1‑94 (MQ=60)

                                                AGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGC                                              >  SRR4302533.3512006/1‑94 (MQ=60)

                                                AGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGC                                              <  SRR4302533.4569253/94‑1 (MQ=60)

                                                  CTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGT                                            >  SRR4302533.601471/1‑94 (MQ=60)

                                                  CTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGT                                            >  SRR4302533.601472/1‑94 (MQ=60)

                                                  CTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGT                                            >  SRR4302533.3573258/1‑94 (MQ=60)

                                                  CTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGT                                            >  SRR4302533.6155536/1‑94 (MQ=60)

                                                  CTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGT                                            >  SRR4302533.4169532/1‑94 (MQ=60)

                                                   TTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTT                                           >  SRR4302533.2473010/1‑94 (MQ=60)

                                                   TTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTT                                           <  SRR4302533.2822267/94‑1 (MQ=60)

                                                   TTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTT                                           >  SRR4302533.302716/1‑94 (MQ=60)

                                                    TACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTG                                          <  SRR4302533.3951815/94‑1 (MQ=60)

                                                     ACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGA                                         >  SRR4302533.1851126/1‑94 (MQ=60)

                                                     ACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGA                                         >  SRR4302533.4303747/1‑94 (MQ=60)

                                                     ACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGA                                         >  SRR4302533.3838258/1‑94 (MQ=60)

                                                      CTTAAATTATCCTTTATCAGCGTCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAT                                        >  SRR4302533.6199652/1‑94 (MQ=60)

                                                      CTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAT                                        >  SRR4302533.3276636/1‑94 (MQ=60)

                                                      CTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAT                                        <  SRR4302533.1788305/94‑1 (MQ=60)

                                                      CTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGAT                                        >  SRR4302533.5033694/1‑94 (MQ=60)

                                                       TTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATA                                       <  SRR4302533.1373985/94‑1 (MQ=60)

                                                          AATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAA                                    >  SRR4302533.5334306/1‑94 (MQ=60)

                                                            TTATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATT                                  >  SRR4302533.4597973/1‑94 (MQ=60)

                                                             TATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTG                                 <  SRR4302533.1116199/94‑1 (MQ=60)

                                                             TATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTG                                 >  SRR4302533.668570/1‑94 (MQ=60)

                                                              ATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGG                                <  SRR4302533.4820354/94‑1 (MQ=60)

                                                              ATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGG                                <  SRR4302533.3685736/94‑1 (MQ=60)

                                                              ATCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGG                                >  SRR4302533.3366544/1‑94 (MQ=60)

                                                               TCCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGC                               <  SRR4302533.3075274/94‑1 (MQ=60)

                                                                CCTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCG                              <  SRR4302533.804325/94‑1 (MQ=60)

                                                                CCTTGATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCG                              <  SRR4302533.1227117/94‑1 (MQ=60)

                                                                 CTTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGC                             >  SRR4302533.4466276/1‑94 (MQ=60)

                                                                  TTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCA                            <  SRR4302533.1005853/94‑1 (MQ=60)

                                                                  TTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCA                            >  SRR4302533.2343260/1‑94 (MQ=60)

                                                                  TTTATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCA                            <  SRR4302533.5411476/94‑1 (MQ=60)

                                                                     ATCAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATT                         <  SRR4302533.6321421/94‑1 (MQ=60)

                                                                       CAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGT                       <  SRR4302533.867681/94‑1 (MQ=60)

                                                                       CAGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGT                       <  SRR4302533.3712797/94‑1 (MQ=60)

                                                                        AGCGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTG                      <  SRR4302533.1165839/94‑1 (MQ=60)

                                                                          CGCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCC                    >  SRR4302533.301451/1‑94 (MQ=60)

                                                                           GCCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCG                   <  SRR4302533.5950650/94‑1 (MQ=60)

                                                                            CCAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGG                  >  SRR4302533.284238/1‑94 (MQ=60)

                                                                             CAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGT                 >  SRR4302533.4114687/1‑94 (MQ=60)

                                                                             CAGCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGT                 >  SRR4302533.4825590/1‑94 (MQ=60)

                                                                             CAGCGCTTCTTTACTGCCGATATAGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGT                 <  SRR4302533.5408779/94‑1 (MQ=60)

                                                                               GCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGT               >  SRR4302533.5772615/1‑94 (MQ=60)

                                                                               GCGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGT               >  SRR4302533.3420458/1‑94 (MQ=60)

                                                                                CGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTG              >  SRR4302533.25526/1‑94 (MQ=60)

                                                                                CGCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGGCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTG              >  SRR4302533.6011319/1‑94 (MQ=60)

                                                                                 GCTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGA             >  SRR4302533.5057844/1‑94 (MQ=60)

                                                                                  CTTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGAC            >  SRR4302533.2588065/1‑94 (MQ=60)

                                                                                   TTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACC           <  SRR4302533.5454871/94‑1 (MQ=60)

                                                                                   TTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACC           >  SRR4302533.918025/1‑94 (MQ=60)

                                                                                   TTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACC           <  SRR4302533.3057487/94‑1 (MQ=60)

                                                                                   TTCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTAGCGCAATTGTGCCGGTGTGACC           >  SRR4302533.2496725/1‑94 (MQ=60)

                                                                                    TCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCG          >  SRR4302533.4741399/1‑94 (MQ=60)

                                                                                    TCTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCG          <  SRR4302533.2409791/94‑1 (MQ=60)

                                                                                     CTTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGT         >  SRR4302533.3753131/1‑94 (MQ=60)

                                                                                      TTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTG        <  SRR4302533.6274375/94‑1 (MQ=60)

                                                                                      TTTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTG        >  SRR4302533.2318535/1‑94 (MQ=60)

                                                                                       TTACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGG       <  SRR4302533.1471300/94‑1 (MQ=60)

                                                                                        TACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGC      >  SRR4302533.6269166/1‑94 (MQ=60)

                                                                                         ACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCG     <  SRR4302533.789227/94‑1 (MQ=60)

                                                                                         ACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCG     <  SRR4302533.2563533/94‑1 (MQ=60)

                                                                                         ACTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCG     >  SRR4302533.2361439/1‑94 (MQ=60)

                                                                                          CTGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCGA    >  SRR4302533.4736670/1‑94 (MQ=60)

                                                                                           TGCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCGAC   >  SRR4302533.119918/1‑94 (MQ=60)

                                                                                            GCCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGNCGCAATTGTGCCGGTGNGACCNTNGNGNCA  >  SRR4302533.610771/1‑94 (MQ=60)

TCGGCTTTTGTCGGCCAGACGCGATTTTCAGCTGCTTTGTTAGCCGGAAGCTTACTTAAATTATCCTTTATCAGCGCCAGCGCTTCTTTACTGTCGATATCGCCGACCACGATAAAGGTCATATTATTTGGTTGATACCAGCGTTGATAAAATTGGCGCAATTGTGCCGGTGTGACCGTGGCGACA  >  NC_000913/1572433‑1572618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`