Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,662,601	T→C	A27A (GCT→GCC)	b1591 →	putative oxidoreductase component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,662,601	0	T	C	100.0%	651.0 / NA	204	A27A (GCT→GCC)	b1591	putative oxidoreductase component
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (104/100); total (104/100)

Only 100 of 215 total aligned reads displayed.

ACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCTCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAG  >  NC_000913/1662511‑1662689

acaTTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGcccc                                                                                        >  1:2867571/1‑93 (MQ=255)

 caTTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCa                                                                                       <  1:5759968/93‑1 (MQ=255)

 caTTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCa                                                                                       <  2:4663826/93‑1 (MQ=255)

   tttCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCaga                                                                                     <  1:3642133/93‑1 (MQ=255)

    ttCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCagag                                                                                    <  2:391518/93‑1 (MQ=255)

     tCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCagaga                                                                                   >  1:2236355/1‑93 (MQ=255)

     tCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCagaga                                                                                   <  1:3065058/93‑1 (MQ=255)

      cAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCagagag                                                                                  <  1:5198622/93‑1 (MQ=255)

       aGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGt                                                                                 <  2:4886217/93‑1 (MQ=255)

         gATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGc                                                                               <  1:5010660/93‑1 (MQ=255)

         gATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGc                                                                               <  2:2008249/93‑1 (MQ=255)

             ttAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGaa                                                                           >  1:5300842/1‑93 (MQ=255)

             ttAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGaa                                                                           >  1:1088812/1‑93 (MQ=255)

              ttggAATGCCCCCTTTTTTACAGCAAGATAATTTTTCGAGCGCGCGGCGCGAGTTGAGCGCGCAGCTTCATTACGCACAAGAGAGTCGGGaac                                                                          >  2:2957520/3‑92 (MQ=255)

              tAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAg                                                                          <  2:142738/93‑1 (MQ=255)

                ggAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGcc                                                                        >  1:5732308/1‑93 (MQ=255)

                ggAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGcc                                                                        <  2:5476991/93‑1 (MQ=255)

                   aTGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCa                                                                     >  1:4138706/1‑93 (MQ=255)

                    tGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCAc                                                                    <  2:2616149/93‑1 (MQ=255)

                     gACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCAcc                                                                   <  1:4170786/93‑1 (MQ=255)

                      aCCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACct                                                                  >  1:5387478/1‑93 (MQ=255)

                      aCCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACct                                                                  <  1:2670698/93‑1 (MQ=255)

                       cccATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTTTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACctc                                                                 <  1:6218782/93‑1 (MQ=255)

                       cccATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACctc                                                                 <  1:385199/93‑1 (MQ=255)

                       cccATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACctc                                                                 >  1:4464184/1‑93 (MQ=255)

                          aTTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTgg                                                              >  2:2317227/1‑93 (MQ=255)

                          aTTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTgg                                                              >  2:193851/1‑93 (MQ=255)

                           tttttCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGt                                                             <  1:2318346/93‑1 (MQ=255)

                             tttCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTg                                                           >  2:1493930/1‑93 (MQ=255)

                                 acaGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGACGCCGCACCTCTGGTTGCgga                                                       >  2:1716385/1‑92 (MQ=255)

                                   aGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTAc                                                     >  1:114359/1‑93 (MQ=255)

                                    gCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACt                                                    >  1:1273623/1‑93 (MQ=255)

                                     cAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGCAGCCGCACCTCTGGTTGCGGTACTc                                                   >  1:2060773/1‑93 (MQ=255)

                                     cAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTc                                                   >  2:2355357/1‑93 (MQ=255)

                                       aGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCAc                                                 >  2:2496979/1‑93 (MQ=255)

                                       aGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCAc                                                 >  2:5177336/1‑93 (MQ=255)

                                       aGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCAc                                                 <  2:767390/93‑1 (MQ=255)

                                        gATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCAcc                                                <  2:4149603/93‑1 (MQ=255)

                                        gATAATTTTTCTGGCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCAcc                                                <  1:985024/93‑1 (MQ=255)

                                         aTAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCTCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCa                                               <  1:4943877/93‑1 (MQ=255)

                                          tAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAg                                              >  1:3211489/1‑93 (MQ=255)

                                          tAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAg                                              <  1:636045/93‑1 (MQ=255)

                                          tAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAg                                              >  1:4241080/1‑93 (MQ=255)

                                           aaTTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGt                                             <  2:4194456/93‑1 (MQ=255)

                                             tttttCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGa                                           >  2:3150162/1‑93 (MQ=255)

                                              ttttCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGAc                                          <  1:3926661/93‑1 (MQ=255)

                                                ttCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACgg                                        <  2:4806141/93‑1 (MQ=255)

                                                ttCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACgg                                        <  2:1152953/93‑1 (MQ=255)

                                                 tCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGc                                       <  1:1033403/93‑1 (MQ=255)

                                                  cTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCt                                      <  2:5117872/93‑1 (MQ=255)

                                                  cTGTCGCGGCGCGCGTGCTGGGCGCGCTGTTTTATTACGCCCTAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCt                                      <  1:1342598/93‑1 (MQ=255)

                                                   tGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGGTGCGGTACTCACCAGTGACGGCTg                                     >  1:83493/1‑93 (MQ=255)

                                                     tCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTggg                                   >  2:897389/1‑93 (MQ=255)

                                                     tCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTggg                                   >  1:3723538/1‑93 (MQ=255)

                                                     tCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTggg                                   >  2:5488315/1‑93 (MQ=255)

                                                       gcggcgCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGaa                                 >  2:5756745/1‑93 (MQ=255)

                                                            gcgctTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCa                            <  2:3689350/93‑1 (MQ=255)

                                                             cgcgTGTTGGGCGCGCTGTTTTATTACGCCCAAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAg                           >  1:5993374/1‑93 (MQ=255)

                                                               cgTGTTGGGCGCGCTGTTTTATTGCGCCCCAGAGAGTGCGAAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTg                         <  1:1644200/93‑1 (MQ=255)

                                                               cgTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTg                         <  2:1125600/93‑1 (MQ=255)

                                                               cgTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTg                         >  1:4869848/1‑93 (MQ=255)

                                                                  gtTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGcc                      <  1:3502146/93‑1 (MQ=255)

                                                                   ttGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCct                     <  1:1976431/93‑1 (MQ=255)

                                                                   ttGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCct                     <  1:2555948/93‑1 (MQ=255)

                                                                   ttGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCct                     >  1:545100/1‑93 (MQ=255)

                                                                    tGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCctc                    >  1:3240812/1‑93 (MQ=255)

                                                                    tGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCctc                    <  1:4387932/93‑1 (MQ=255)

                                                                       gcgcgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTAc                 <  1:742499/93‑1 (MQ=255)

                                                                       gcgcgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTAc                 <  1:4664667/93‑1 (MQ=255)

                                                                        cgcgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTAcc                >  2:5891498/1‑93 (MQ=255)

                                                                         gcgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCa               >  1:4987981/1‑93 (MQ=255)

                                                                          cgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAg              <  2:878188/93‑1 (MQ=255)

                                                                          cgcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGCTGCGGTACTCACCAGTGACGGCTGGGGCACTCAATCGCCTCTACCAg              >  2:5992058/1‑93 (MQ=255)

                                                                           gcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGa             >  1:6020665/1‑93 (MQ=255)

                                                                           gcTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGa             >  1:3280447/1‑93 (MQ=255)

                                                                            cTGTTTTATTCCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGaa            <  2:5492198/93‑1 (MQ=255)

                                                                            cTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGaa            >  1:1786078/1‑93 (MQ=255)

                                                                            cTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGaa            >  1:1511780/1‑93 (MQ=255)

                                                                             tGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCCCCTCTGGTTGCGGTACTCCCCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAg           <  2:6291064/93‑1 (MQ=255)

                                                                             tGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAg           >  1:4158216/1‑93 (MQ=255)

                                                                             tGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAg           >  2:2874687/1‑93 (MQ=255)

                                                                             tGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAg           <  2:749960/93‑1 (MQ=255)

                                                                             tGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAg           <  2:3233700/93‑1 (MQ=255)

                                                                              gTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGc          <  2:4509545/93‑1 (MQ=255)

                                                                              gTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGc          >  2:4955905/1‑93 (MQ=255)

                                                                              gTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGc          >  2:3255766/1‑93 (MQ=255)

                                                                               ttttATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCg         <  2:2772162/93‑1 (MQ=255)

                                                                               ttttATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCg         >  1:936619/1‑93 (MQ=255)

                                                                               ttttATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGGACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCg         >  2:1587150/1‑93 (MQ=255)

                                                                                  tattaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCa      >  1:3791784/1‑93 (MQ=255)

                                                                                  tattaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCa      <  2:2579073/93‑1 (MQ=255)

                                                                                  tattaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCa      <  2:3834151/93‑1 (MQ=255)

                                                                                   attaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCAt     >  2:1207755/1‑93 (MQ=255)

                                                                                    ttaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCAtt    <  2:3832641/93‑1 (MQ=255)

                                                                                    ttaCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCAtt    <  1:5785398/93‑1 (MQ=255)

                                                                                     taCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTa   <  2:3321425/93‑1 (MQ=255)

                                                                                     taCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTa   >  2:2111517/1‑93 (MQ=255)

                                                                                     taCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTa   <  2:5582588/93‑1 (MQ=255)

                                                                                     taCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTa   <  2:5423537/93‑1 (MQ=255)

                                                                                     taCGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTa   <  2:1889409/93‑1 (MQ=255)

ACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCTCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAG  >  NC_000913/1662511‑1662689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCTCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCG  >  NC_000913/1662508‑1662694

CGCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCC                                                                                               >  SRR4302533.2011519/1‑94 (MQ=60)

CGCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCC                                                                                               <  SRR4302533.3774798/94‑1 (MQ=60)

 GCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCC                                                                                              <  SRR4302533.1039051/94‑1 (MQ=60)

 GCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCC                                                                                              >  SRR4302533.2257008/1‑94 (MQ=60)

  CACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCC                                                                                             >  SRR4302533.2885212/1‑94 (MQ=60)

  CACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCC                                                                                             >  SRR4302533.2885213/1‑94 (MQ=60)

    CATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAG                                                                                           <  SRR4302533.5794725/94‑1 (MQ=60)

      TTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAG                                                                                         <  SRR4302533.3664528/94‑1 (MQ=60)

       TTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGA                                                                                        >  SRR4302533.2250180/1‑94 (MQ=60)

        TCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAG                                                                                       <  SRR4302533.4000940/94‑1 (MQ=60)

        TCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAG                                                                                       <  SRR4302533.3083884/94‑1 (MQ=60)

         CAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGT                                                                                      <  SRR4302533.4980811/94‑1 (MQ=60)

         CAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGT                                                                                      <  SRR4302533.5229969/94‑1 (MQ=60)

         CAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGT                                                                                      >  SRR4302533.4353712/1‑94 (MQ=60)

         CAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGG                                                                                      >  SRR4302533.1460108/1‑94 (MQ=60)

          AGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTG                                                                                     <  SRR4302533.4189833/94‑1 (MQ=60)

           GGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGC                                                                                    >  SRR4302533.5797246/1‑94 (MQ=60)

           GGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGC                                                                                    >  SRR4302533.2605379/1‑94 (MQ=60)

           GGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGC                                                                                    >  SRR4302533.1093198/1‑94 (MQ=60)

            GATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCG                                                                                   <  SRR4302533.5041016/94‑1 (MQ=60)

            GATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCG                                                                                   >  SRR4302533.4935221/1‑94 (MQ=60)

              TGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGA                                                                                 >  SRR4302533.4183739/1‑94 (MQ=60)

               GTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAA                                                                                >  SRR4302533.1095240/1‑94 (MQ=60)

               GTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAA                                                                                >  SRR4302533.5332599/1‑94 (MQ=60)

                TTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAG                                                                               <  SRR4302533.3571711/94‑1 (MQ=60)

                  AGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCC                                                                             <  SRR4302533.5598270/94‑1 (MQ=60)

                  AGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCC                                                                             >  SRR4302533.5766915/1‑94 (MQ=60)

                  AGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCC                                                                             <  SRR4302533.1717193/94‑1 (MQ=60)

                    GAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGC                                                                           <  SRR4302533.769721/94‑1 (MQ=60)

                     AATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCA                                                                          >  SRR4302533.4163943/1‑94 (MQ=60)

                     AATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCA                                                                          >  SRR4302533.4163811/1‑94 (MQ=60)

                       TGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGGGCGGAGGCCGCACC                                                                        >  SRR4302533.1326560/1‑94 (MQ=60)

                        GACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCT                                                                       >  SRR4302533.5419850/1‑94 (MQ=60)

                        GACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCT                                                                       <  SRR4302533.4196057/94‑1 (MQ=60)

                         ACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTC                                                                      >  SRR4302533.4491184/1‑94 (MQ=60)

                         ACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTC                                                                      >  SRR4302533.4676084/1‑94 (MQ=60)

                         ACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTC                                                                      <  SRR4302533.2687077/94‑1 (MQ=60)

                          CCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTTTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCT                                                                     <  SRR4302533.6256067/94‑1 (MQ=60)

                          CCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCT                                                                     <  SRR4302533.387523/94‑1 (MQ=60)

                           CCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTG                                                                    >  SRR4302533.3250087/1‑94 (MQ=60)

                             ATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGT                                                                  >  SRR4302533.6302330/1‑94 (MQ=60)

                              TTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTT                                                                 <  SRR4302533.2332699/94‑1 (MQ=60)

                                 TTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCG                                                              <  SRR4302533.1549841/94‑1 (MQ=60)

                                 TTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCG                                                              <  SRR4302533.5447014/94‑1 (MQ=60)

                                     CAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTAC                                                          >  SRR4302533.115083/1‑94 (MQ=60)

                                      AGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACT                                                         >  SRR4302533.3824032/1‑94 (MQ=60)

                                      AGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACT                                                         <  SRR4302533.3893826/94‑1 (MQ=60)

                                      AGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACT                                                         >  SRR4302533.2196922/1‑94 (MQ=60)

                                      AGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACT                                                         >  SRR4302533.1281246/1‑94 (MQ=60)

                                      AGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACT                                                         <  SRR4302533.2299385/94‑1 (MQ=60)

                                       GCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGCAGCCGCACCTCTGGTTGCGGTACTC                                                        >  SRR4302533.2073484/1‑94 (MQ=60)

                                        CAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCA                                                       >  SRR4302533.6143839/1‑94 (MQ=60)

                                          AGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACC                                                     <  SRR4302533.709135/94‑1 (MQ=60)

                                           GATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCA                                                    <  SRR4302533.3111882/94‑1 (MQ=60)

                                           GATAATTTTTCTGGCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCA                                                    <  SRR4302533.990793/94‑1 (MQ=60)

                                            ATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCTCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAG                                                   <  SRR4302533.4973803/94‑1 (MQ=60)

                                            ATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAG                                                   >  SRR4302533.4266691/1‑94 (MQ=60)

                                            ATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAG                                                   >  SRR4302533.3231272/1‑94 (MQ=60)

                                             TAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGT                                                  <  SRR4302533.639788/94‑1 (MQ=60)

                                             TAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGT                                                  <  SRR4302533.5078106/94‑1 (MQ=60)

                                              AATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTG                                                 >  SRR4302533.1991647/1‑94 (MQ=60)

                                                 TTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACG                                              <  SRR4302533.3950633/94‑1 (MQ=60)

                                                  TTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGG                                             >  SRR4302533.731197/1‑94 (MQ=60)

                                                  TTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGG                                             <  SRR4302533.947402/94‑1 (MQ=60)

                                                   TTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGC                                            >  SRR4302533.2997763/1‑94 (MQ=60)

                                                    TCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCT                                           <  SRR4302533.1039481/94‑1 (MQ=60)

                                                     CTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTG                                          >  SRR4302533.875403/1‑94 (MQ=60)

                                                     CTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGGTGCGGTACTCACCAGTGACGGCTG                                          >  SRR4302533.84024/1‑94 (MQ=60)

                                                     CTGTCGCGGCGCGCGTGCTGGGCGCGCTGTTTTATTACGCCCTAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTG                                          <  SRR4302533.1350682/94‑1 (MQ=60)

                                                      TGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGG                                         >  SRR4302533.5773764/1‑94 (MQ=60)

                                                       GTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGG                                        >  SRR4302533.1795994/1‑94 (MQ=60)

                                                       GTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGG                                        >  SRR4302533.3746384/1‑94 (MQ=60)

                                                       GTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGGACTCACCAGTGACGGCTGGG                                        >  SRR4302533.6043717/1‑94 (MQ=60)

                                                         CGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAA                                      >  SRR4302533.1120429/1‑94 (MQ=60)

                                                               GCGCGTGTTGGGCGCGCTGTTTTATTACGCCCAAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAG                                >  SRR4302533.6029677/1‑94 (MQ=60)

                                                                 GCGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTG                              >  SRR4302533.4899355/1‑94 (MQ=60)

                                                                  CGTGTTGGGCGCGCTGTTTTATTGCGCCCCAGAGAGTGCGAAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGG                             <  SRR4302533.1654155/94‑1 (MQ=60)

                                                                  CGTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGG                             <  SRR4302533.1798490/94‑1 (MQ=60)

                                                                   GTGTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGCTGCGGTACTCACCAGTGACGGCTGGGGAACTCAGTGGC                            >  SRR4302533.5235825/1‑94 (MQ=60)

                                                                     GTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCT                          <  SRR4302533.3523741/94‑1 (MQ=60)

                                                                     GTTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCT                          >  SRR4302533.548338/1‑94 (MQ=60)

                                                                      TTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTC                         >  SRR4302533.3260782/1‑94 (MQ=60)

                                                                      TTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTC                         <  SRR4302533.2571669/94‑1 (MQ=60)

                                                                      TTGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTC                         <  SRR4302533.1988537/94‑1 (MQ=60)

                                                                       TGGGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCT                        <  SRR4302533.4414423/94‑1 (MQ=60)

                                                                         GGCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTAC                      <  SRR4302533.5638332/94‑1 (MQ=60)

                                                                          GCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACC                     <  SRR4302533.4692928/94‑1 (MQ=60)

                                                                          GCGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACC                     <  SRR4302533.746869/94‑1 (MQ=60)

                                                                           CGCGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCA                    >  SRR4302533.5018225/1‑94 (MQ=60)

                                                                             CGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGA                  >  SRR4302533.6057148/1‑94 (MQ=60)

                                                                             CGCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGA                  >  SRR4302533.3300698/1‑94 (MQ=60)

                                                                              GCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAA                 >  SRR4302533.2568176/1‑94 (MQ=60)

                                                                              GCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAA                 <  SRR4302533.48329/94‑1 (MQ=60)

                                                                              GCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAA                 >  SRR4302533.3270144/1‑94 (MQ=60)

                                                                              GCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAA                 >  SRR4302533.1796938/1‑94 (MQ=60)

                                                                              GCTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAA                 >  SRR4302533.1520891/1‑94 (MQ=60)

                                                                               CTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAG                >  SRR4302533.2728142/1‑94 (MQ=60)

                                                                               CTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAG                >  SRR4302533.5033384/1‑94 (MQ=60)

                                                                               CTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAG                <  SRR4302533.4243064/94‑1 (MQ=60)

                                                                               CTGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAG                >  SRR4302533.4183413/1‑94 (MQ=60)

                                                                                TGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGC               >  SRR4302533.5401898/1‑94 (MQ=60)

                                                                                TGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGC               >  SRR4302533.3645843/1‑94 (MQ=60)

                                                                                TGTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGC               >  SRR4302533.3810837/1‑94 (MQ=60)

                                                                                 GTTTTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCG              >  SRR4302533.942123/1‑94 (MQ=60)

                                                                                    TTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCA           >  SRR4302533.3814997/1‑94 (MQ=60)

                                                                                    TTATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCA           <  SRR4302533.3429943/94‑1 (MQ=60)

                                                                                     TATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCAT          >  SRR4302533.4489765/1‑94 (MQ=60)

                                                                                     TATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCAT          >  SRR4302533.3734493/1‑94 (MQ=60)

                                                                                      ATTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATT         >  SRR4302533.4993891/1‑94 (MQ=60)

                                                                                       TTACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTA        <  SRR4302533.5820338/94‑1 (MQ=60)

                                                                                        TACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAG       <  SRR4302533.1154498/94‑1 (MQ=60)

                                                                                         ACGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGC      <  SRR4302533.5826507/94‑1 (MQ=60)

                                                                                          CGCCCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCG     >  SRR4302533.1581581/1‑94 (MQ=60)

                                                                                             CCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCG  >  SRR4302533.2367876/1‑94 (MQ=60)

CGCACATTTCAGGATGTTAGGAATGACCCATTTTTCACAGCAAGATAATTTTTCTGTCGCGGCGCGCGTGTTGGGCGCGCTGTTTTATTACGCTCCAGAGAGTGCGGAAGCCGCACCTCTGGTTGCGGTACTCACCAGTGACGGCTGGGAAACTCAGTGGCCTCTACCAGAAGCGTCATTAGCGCCG  >  NC_000913/1662508‑1662694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`