Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,672,562 T→C L209P (CTG→CCG)  b1601 → putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,672,5620TC100.0% 580.4 / NA 182L209P (CTG→CCG) b1601putative transport protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (102/80);  total (102/80)

Only 100 of 189 total aligned reads displayed.

CGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCTGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATA  >  NC_000913/1672472‑1672651
                                                                                          |                                                                                         
cGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCgg                                                                                         >  1:4135020/1‑93 (MQ=255)
 ggTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGt                                                                                        >  1:3862130/1‑93 (MQ=255)
 ggTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGt                                                                                        <  1:2491883/93‑1 (MQ=255)
 ggTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGt                                                                                        >  1:1896139/1‑93 (MQ=255)
 cgTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGt                                                                                        <  1:506420/92‑1 (MQ=255)
  gTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTc                                                                                       >  1:2191223/1‑93 (MQ=255)
     gAAGGGTTGGCGGCGATTAAACGTGCGATTGACAGTGTTTCTCCTTATCTGGTGCTGCATACAGCCCTCCGCATCATAACCCGCGCGGTCGcc                                                                                    >  2:619398/1‑93 (MQ=255)
     gAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGcc                                                                                    <  2:2271739/93‑1 (MQ=255)
     gAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGcc                                                                                    >  2:4651554/1‑93 (MQ=255)
            tGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGa                                                                             >  2:1580468/1‑93 (MQ=255)
            tGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGa                                                                             >  2:3554900/1‑93 (MQ=255)
            tGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGa                                                                             <  2:323343/93‑1 (MQ=255)
             ggcggcGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGAt                                                                            <  1:16741/93‑1 (MQ=255)
                 gcgATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATggtg                                                                        >  1:2641534/1‑90 (MQ=255)
                 gcgATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTc                                                                        >  1:1915271/1‑93 (MQ=255)
                 gcgATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTc                                                                        >  2:1429004/1‑93 (MQ=255)
                  cgATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTcg                                                                       >  2:1281158/1‑93 (MQ=255)
                   gATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTcgc                                                                      >  1:4928103/1‑93 (MQ=255)
                    aTTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTcgct                                                                     >  2:1999030/1‑92 (MQ=255)
                    aTTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTcgcc                                                                     >  1:1654205/1‑93 (MQ=255)
                    aTTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTcgcc                                                                     >  1:3708607/1‑93 (MQ=255)
                       cAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCa                                                                  >  2:4695556/1‑93 (MQ=255)
                        aaCGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCAc                                                                 >  2:1207367/1‑93 (MQ=255)
                         aCGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACt                                                                <  1:489169/93‑1 (MQ=255)
                          cGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTc                                                               >  2:3719511/1‑93 (MQ=255)
                          cGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTc                                                               >  1:4162550/1‑93 (MQ=255)
                          cGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTc                                                               <  1:5916759/93‑1 (MQ=255)
                           gTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCg                                                              >  1:3342914/1‑93 (MQ=255)
                           gTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCg                                                              >  2:4262384/1‑93 (MQ=255)
                           gTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCg                                                              <  2:5702501/93‑1 (MQ=255)
                            tGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGa                                                             <  1:6195886/93‑1 (MQ=255)
                            tGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGa                                                             >  1:4422613/1‑93 (MQ=255)
                            tGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGa                                                             >  1:3147393/1‑93 (MQ=255)
                            tGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGa                                                             >  1:4017137/1‑93 (MQ=255)
                            tGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGa                                                             >  1:183390/1‑93 (MQ=255)
                             gCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGAt                                                            <  1:3053703/93‑1 (MQ=255)
                             gCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGAt                                                            >  2:3646815/1‑93 (MQ=255)
                             gCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGAt                                                            <  1:4632325/93‑1 (MQ=255)
                              cGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATg                                                           <  2:3003488/93‑1 (MQ=255)
                                 ttGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttc                                                        >  2:6245207/1‑93 (MQ=255)
                                 ttGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttc                                                        >  2:3321201/1‑93 (MQ=255)
                                  tGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcg                                                       >  1:4246776/1‑93 (MQ=255)
                                   gACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgc                                                      >  2:3799379/1‑93 (MQ=255)
                                    aCAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgct                                                     >  2:4960036/1‑93 (MQ=255)
                                    aCAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgct                                                     <  2:955682/93‑1 (MQ=255)
                                     cAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgctt                                                    <  1:5249727/93‑1 (MQ=255)
                                      aGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgcttc                                                   <  2:6174252/93‑1 (MQ=255)
                                       gtgtTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCAGCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGttcgcttcg                                                  >  1:3383552/1‑93 (MQ=255)
                                         gtTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTtcgcttcgct                                                >  2:5570199/1‑93 (MQ=255)
                                           ttCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCttt                                              >  1:2742548/1‑93 (MQ=255)
                                            tctcATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCtttt                                             <  2:1811556/93‑1 (MQ=255)
                                              tcATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGt                                           <  1:449492/93‑1 (MQ=255)
                                               cATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTc                                          >  2:849910/1‑93 (MQ=255)
                                               cATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTc                                          <  2:913988/93‑1 (MQ=255)
                                               cATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTc                                          >  1:4803059/1‑93 (MQ=255)
                                                aTTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCt                                         <  1:1312157/93‑1 (MQ=255)
                                                aTTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCt                                         <  2:511806/93‑1 (MQ=255)
                                                aTTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCt                                         >  2:5735493/1‑93 (MQ=255)
                                                aTTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCt                                         >  1:607403/1‑93 (MQ=255)
                                                 ttATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTg                                        >  2:342165/1‑93 (MQ=255)
                                                 ttATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTg                                        >  2:645595/1‑93 (MQ=255)
                                                   aTCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTggg                                      <  1:1764904/93‑1 (MQ=255)
                                                   aTCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTggg                                      >  2:3495674/1‑93 (MQ=255)
                                                     cTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGa                                    >  2:4850010/1‑93 (MQ=255)
                                                      tGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGAt                                   >  1:1105710/1‑93 (MQ=255)
                                                      tGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGAt                                   >  1:4275626/1‑93 (MQ=255)
                                                         tGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGc                                <  1:2101414/93‑1 (MQ=255)
                                                          gCTGAAACCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCt                               <  2:2442583/93‑1 (MQ=255)
                                                          gCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCGCTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCt                               <  2:1133884/93‑1 (MQ=255)
                                                           cTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCTCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTg                              <  1:3079652/93‑1 (MQ=255)
                                                           cTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTg                              >  2:5339866/1‑93 (MQ=255)
                                                            tGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATTTTCGCTTCGCTTTTGTCTGGGGATTGCTgg                             >  1:3883726/1‑93 (MQ=255)
                                                              aaaaCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGcc                           <  2:2780001/93‑1 (MQ=255)
                                                               aaaCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCt                          >  2:2331030/1‑93 (MQ=255)
                                                                aaCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCtt                         <  1:1429004/93‑1 (MQ=255)
                                                                aaCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCtt                         <  1:524467/93‑1 (MQ=255)
                                                                 aCAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCttt                        >  1:1006493/1‑93 (MQ=255)
                                                                  cAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTg                       <  2:1027951/93‑1 (MQ=255)
                                                                   aGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTgc                      <  1:2216317/93‑1 (MQ=255)
                                                                   aGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTgc                      <  1:6261279/93‑1 (MQ=255)
                                                                   aGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTgc                      <  1:4990557/93‑1 (MQ=255)
                                                                    gCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTgcg                     >  2:3136553/1‑93 (MQ=255)
                                                                      cATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCt                   >  1:755360/1‑93 (MQ=255)
                                                                      cATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCt                   >  1:4976973/1‑93 (MQ=255)
                                                                        tCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTa                 >  2:5073323/1‑93 (MQ=255)
                                                                         cAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTaa                >  2:1658658/1‑93 (MQ=255)
                                                                          aGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAAt               <  1:5801308/93‑1 (MQ=255)
                                                                           gCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGCGATTGCTGGCCTTTGCTCTTCAtt              >  1:856594/1‑93 (MQ=255)
                                                                            catcatCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTa             <  1:5938852/93‑1 (MQ=255)
                                                                              tcatcaCCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACa           >  2:4493372/1‑93 (MQ=255)
                                                                                atcaCCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCGTCATTACATc         >  1:646387/1‑93 (MQ=255)
                                                                                 tcaCCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATcc        >  1:3528001/1‑93 (MQ=255)
                                                                                   cccGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTCCATCCCg      <  2:2107534/92‑1 (MQ=255)
                                                                                   cccGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCg      <  2:5519734/92‑1 (MQ=255)
                                                                                   aCCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCg      >  1:1818070/1‑93 (MQ=255)
                                                                                    ccGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGa     <  2:2978587/93‑1 (MQ=255)
                                                                                    ccGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGa     <  1:3919006/93‑1 (MQ=255)
                                                                                      ggCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAat   >  2:1919913/1‑93 (MQ=255)
                                                                                      ggCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAat   >  2:4119818/1‑93 (MQ=255)
                                                                                       gCCCGGTCGCCTGGTCGATGCTCGCCGCTCTCGATGTTCGCTTCGCTTTTGACTGGGGATTGCTGGCTTTTGCGCTTATTTTCATCCCGAata  <  2:723378/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCTGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATA  >  NC_000913/1672472‑1672651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCTGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATATTGG  >  NC_000913/1672469‑1672655
                                                                                             |                                                                                             
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCC                                                                                               >  SRR4302533.4311700/1‑94 (MQ=60)
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCC                                                                                               >  SRR4302533.462619/1‑94 (MQ=60)
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCC                                                                                               >  SRR4302533.1871340/1‑94 (MQ=60)
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCC                                                                                               >  SRR4302533.5665375/1‑94 (MQ=60)
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGAGTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGACATCAGCATCATCACCGGCCC                                                                                               >  SRR4302533.3148650/1‑94 (MQ=60)
 TGCGGTTGAAAGGATGGCGGCGATTCAACGTGCGATTTACAGTGTTTCTCATTATCTGGTTCTGAAAACAGCCATCAGCATCATCACCGGCCCG                                                                                              <  SRR4302533.1754076/94‑1 (MQ=60)
 TCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCG                                                                                              >  SRR4302533.4292719/1‑94 (MQ=60)
  CCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGG                                                                                             >  SRR4302533.4160117/1‑94 (MQ=60)
   CGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGT                                                                                            >  SRR4302533.1907710/1‑94 (MQ=60)
   CGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGT                                                                                            >  SRR4302533.2056390/1‑94 (MQ=60)
   CGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGT                                                                                            >  SRR4302533.3885705/1‑94 (MQ=60)
    GGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTC                                                                                           >  SRR4302533.5011817/1‑94 (MQ=60)
    GGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTC                                                                                           >  SRR4302533.2204724/1‑94 (MQ=60)
    GGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTC                                                                                           <  SRR4302533.2507231/94‑1 (MQ=60)
    CGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTC                                                                                           <  SRR4302533.509425/94‑1 (MQ=60)
     GTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCG                                                                                          >  SRR4302533.1782816/1‑94 (MQ=60)
        GAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCT                                                                                       <  SRR4302533.3888781/94‑1 (MQ=60)
        GAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCT                                                                                       >  SRR4302533.3810412/1‑94 (MQ=60)
        GAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTACTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCT                                                                                       <  SRR4302533.4599342/94‑1 (MQ=60)
                GGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATG                                                                               <  SRR4302533.16859/94‑1 (MQ=60)
                   GGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGgtg                                                                            >  SRR4302533.2657765/1‑91 (MQ=60)
                   GGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTC                                                                            >  SRR4302533.1926963/1‑94 (MQ=60)
                   GGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGATGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTC                                                                            <  SRR4302533.480481/94‑1 (MQ=60)
                     CGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGC                                                                          >  SRR4302533.4957946/1‑94 (MQ=60)
                     CGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGC                                                                          >  SRR4302533.4977106/1‑94 (MQ=60)
                      GATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCC                                                                         >  SRR4302533.1664220/1‑94 (MQ=60)
                      GATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCC                                                                         >  SRR4302533.37169/1‑94 (MQ=60)
                      GATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCC                                                                         >  SRR4302533.3731385/1‑94 (MQ=60)
                            ACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTC                                                                   >  SRR4302533.167402/1‑94 (MQ=60)
                            ACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTC                                                                   <  SRR4302533.3982228/94‑1 (MQ=60)
                            ACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTC                                                                   >  SRR4302533.4187772/1‑94 (MQ=60)
                            ACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTC                                                                   <  SRR4302533.492094/94‑1 (MQ=60)
                            ACGTGCCATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTC                                                                   <  SRR4302533.4179009/94‑1 (MQ=60)
                             CGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCG                                                                  <  SRR4302533.5952518/94‑1 (MQ=60)
                             CGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCG                                                                  >  SRR4302533.65145/1‑94 (MQ=60)
                             CGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCG                                                                  <  SRR4302533.3201152/94‑1 (MQ=60)
                             CGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCG                                                                  >  SRR4302533.3363574/1‑94 (MQ=60)
                              GTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGA                                                                 >  SRR4302533.4449352/1‑94 (MQ=60)
                              GTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGA                                                                 >  SRR4302533.3166745/1‑94 (MQ=60)
                              GTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGA                                                                 >  SRR4302533.4041596/1‑94 (MQ=60)
                              GTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGA                                                                 >  SRR4302533.184529/1‑94 (MQ=60)
                               TGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGAT                                                                <  SRR4302533.6233059/94‑1 (MQ=60)
                                GCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATG                                                               <  SRR4302533.3072411/94‑1 (MQ=60)
                                GCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATG                                                               <  SRR4302533.4660398/94‑1 (MQ=60)
                                  GATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTT                                                             >  SRR4302533.1382168/1‑94 (MQ=60)
                                    TTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCG                                                           >  SRR4302533.4272409/1‑94 (MQ=60)
                                     TGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGC                                                          >  SRR4302533.963855/1‑94 (MQ=60)
                                     TGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGC                                                          >  SRR4302533.1760578/1‑94 (MQ=60)
                                        CAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTC                                                       <  SRR4302533.1839255/94‑1 (MQ=60)
                                        CAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTC                                                       <  SRR4302533.5281278/94‑1 (MQ=60)
                                         AGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCAGCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCG                                                      >  SRR4302533.3404441/1‑94 (MQ=60)
                                            GTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTT                                                   <  SRR4302533.3080867/94‑1 (MQ=60)
                                             TTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTT                                                  >  SRR4302533.2759364/1‑94 (MQ=60)
                                                 TCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTC                                              >  SRR4302533.4832148/1‑94 (MQ=60)
                                                 TCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTC                                              <  SRR4302533.3937807/94‑1 (MQ=60)
                                                 TCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTC                                              <  SRR4302533.452179/94‑1 (MQ=60)
                                                  CATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCT                                             >  SRR4302533.610980/1‑94 (MQ=60)
                                                   ATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTG                                            >  SRR4302533.4350793/1‑94 (MQ=60)
                                                   ATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTG                                            <  SRR4302533.1320031/94‑1 (MQ=60)
                                                    TTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGG                                           >  SRR4302533.1154786/1‑94 (MQ=60)
                                                     TATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGG                                          <  SRR4302533.4898542/94‑1 (MQ=60)
                                                      ATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGG                                         <  SRR4302533.1775650/94‑1 (MQ=60)
                                                       TCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGA                                        <  SRR4302533.2749698/94‑1 (MQ=60)
                                                        CTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGAT                                       >  SRR4302533.1112266/1‑94 (MQ=60)
                                                        CTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGAT                                       >  SRR4302533.4301345/1‑94 (MQ=60)
                                                         TGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATT                                      <  SRR4302533.419487/94‑1 (MQ=60)
                                                           GTGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGC                                    <  SRR4302533.2807294/94‑1 (MQ=60)
                                                            TGCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCT                                   <  SRR4302533.2114373/94‑1 (MQ=60)
                                                             GCTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTG                                  >  SRR4302533.59267/1‑94 (MQ=60)
                                                              CTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCTCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGG                                 <  SRR4302533.3098549/94‑1 (MQ=60)
                                                              CTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATTTTCGCTTCGCTTTTGTCTGGGGATTGCTGG                                 >  SRR4302533.3907424/1‑94 (MQ=60)
                                                              CTGAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGG                                 <  SRR4302533.222716/94‑1 (MQ=60)
                                                                GAAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCC                               <  SRR4302533.1589986/94‑1 (MQ=60)
                                                                 AAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCT                              >  SRR4302533.6263872/1‑94 (MQ=60)
                                                                 AAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCT                              >  SRR4302533.6148743/1‑94 (MQ=60)
                                                                 AAAACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCT                              <  SRR4302533.2118323/94‑1 (MQ=60)
                                                                   AACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTT                            >  SRR4302533.1012383/1‑94 (MQ=60)
                                                                   AACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTT                            <  SRR4302533.1437644/94‑1 (MQ=60)
                                                                   AACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTT                            <  SRR4302533.527575/94‑1 (MQ=60)
                                                                    ACAGCCATCAGCATCATCCCCGGCCGGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTG                           <  SRR4302533.350747/94‑1 (MQ=60)
                                                                    ACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTG                           <  SRR4302533.2336476/94‑1 (MQ=60)
                                                                    ACAGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTG                           <  SRR4302533.5776970/94‑1 (MQ=60)
                                                                      AGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCG                         <  SRR4302533.2229999/94‑1 (MQ=60)
                                                                      AGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCG                         <  SRR4302533.5020814/94‑1 (MQ=60)
                                                                      AGCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCG                         <  SRR4302533.6298713/94‑1 (MQ=60)
                                                                       GCCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGC                        >  SRR4302533.839896/1‑94 (MQ=60)
                                                                        CCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCT                       <  SRR4302533.5210829/94‑1 (MQ=60)
                                                                        CCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCT                       >  SRR4302533.759805/1‑94 (MQ=60)
                                                                        CCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCT                       >  SRR4302533.5007152/1‑94 (MQ=60)
                                                                        CCATCAGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCT                       >  SRR4302533.1875560/1‑94 (MQ=60)
                                                                             AGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATT                  <  SRR4302533.5836352/94‑1 (MQ=60)
                                                                             AGCATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGCGATTGCTGGCCTTTGCTCTTCATT                  >  SRR4302533.861610/1‑94 (MQ=60)
                                                                               CATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTAC                <  SRR4302533.5974759/94‑1 (MQ=60)
                                                                                ATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACA               >  SRR4302533.259985/1‑94 (MQ=60)
                                                                                ATCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACA               >  SRR4302533.429762/1‑94 (MQ=60)
                                                                                 TCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACAT              <  SRR4302533.446035/94‑1 (MQ=60)
                                                                                 TCATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCCTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACAT              <  SRR4302533.3400371/94‑1 (MQ=60)
                                                                                  CATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCGTCATTACATC             >  SRR4302533.650195/1‑94 (MQ=60)
                                                                                   ATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCC            >  SRR4302533.3549747/1‑94 (MQ=60)
                                                                                   ATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCC            <  SRR4302533.633894/94‑1 (MQ=60)
                                                                                   ATCACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCC            >  SRR4302533.5066384/1‑94 (MQ=60)
                                                                                     CACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCG          >  SRR4302533.1829176/1‑94 (MQ=60)
                                                                                      ACCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGA         >  SRR4302533.59603/1‑94 (MQ=60)
                                                                                       CCGGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAA        <  SRR4302533.3942939/94‑1 (MQ=60)
                                                                                         GGCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATA      <  SRR4302533.52840/94‑1 (MQ=60)
                                                                                          GCCCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATAT     >  SRR4302533.787126/1‑94 (MQ=60)
                                                                                            CCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATATTG   <  SRR4302533.1990463/94‑1 (MQ=60)
                                                                                            CCGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATATTG   <  SRR4302533.83898/94‑1 (MQ=60)
                                                                                             CGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATATTGG  <  SRR4302533.3611668/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTGTTTCTCATTATCTGGTGCTGAAAACAGCCATCAGCATCATCACCGGCCTGGTCGCCTGGGCGATGCTCGCCGCACTCGATGTTCGCTTCGCTTTTGTCTGGGGATTGCTGGCCTTTGCGCTTAATTACATCCCGAATATTGG  >  NC_000913/1672469‑1672655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑