Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,677,885 A→G Y102C (TAT→TGT)  b1605 → putative arginine/ornithine antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,677,8850AG100.0% 601.7 / NA 185Y102C (TAT→TGT) b1605putative arginine/ornithine antiporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (97/88);  total (97/88)

Only 100 of 188 total aligned reads displayed.

TTACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTATCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATA  >  NC_000913/1677795‑1677973
                                                                                          |                                                                                        
ttACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTc                                                                                        <  2:4048536/93‑1 (MQ=255)
ttACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTc                                                                                        <  2:5850746/93‑1 (MQ=255)
   ccTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTgg                                                                                     >  2:1750023/1‑93 (MQ=255)
   ccTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTgg                                                                                     <  2:538481/93‑1 (MQ=255)
   ccTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTgg                                                                                     <  2:1224222/93‑1 (MQ=255)
    cTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGt                                                                                    >  2:3117237/1‑93 (MQ=255)
    cTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGt                                                                                    <  2:5387112/93‑1 (MQ=255)
     tATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTg                                                                                   <  2:2395838/93‑1 (MQ=255)
     tATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTg                                                                                   >  1:2185160/1‑93 (MQ=255)
      aTGCACGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGa                                                                                  <  1:2148197/93‑1 (MQ=255)
       tGCCCGCGAAGGGTTTGGCGAGCTAGTCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAt                                                                                 <  1:6085769/93‑1 (MQ=255)
       tGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAt                                                                                 <  2:1417461/93‑1 (MQ=255)
       tGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAt                                                                                 >  1:4602174/1‑93 (MQ=255)
         cccGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCg                                                                               >  2:3618384/1‑93 (MQ=255)
          ccGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGt                                                                              >  1:5566614/1‑93 (MQ=255)
          ccGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGt                                                                              >  2:3230813/1‑93 (MQ=255)
           cgcgAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGtt                                                                             >  2:6124368/1‑93 (MQ=255)
               aaGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGtttttt                                                                         >  2:41870/1‑93 (MQ=255)
                 gggTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTcc                                                                       <  1:1884828/93‑1 (MQ=255)
                   gTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCcgc                                                                     >  1:3658736/1‑93 (MQ=255)
                      tGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGtt                                                                  <  2:2606799/93‑1 (MQ=255)
                      tGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGtt                                                                  <  2:4682411/93‑1 (MQ=255)
                       ggCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTa                                                                 >  1:2271019/1‑93 (MQ=255)
                        gCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTaa                                                                >  1:4718924/1‑93 (MQ=255)
                        gCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTaa                                                                <  1:5034985/93‑1 (MQ=255)
                          gAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGc                                                              <  1:673486/93‑1 (MQ=255)
                          gAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGc                                                              >  1:789420/1‑93 (MQ=255)
                           aGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCt                                                             <  1:1538040/93‑1 (MQ=255)
                             cTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCttt                                                           <  2:130728/93‑1 (MQ=255)
                             cTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCttt                                                           >  1:5396489/1‑93 (MQ=255)
                              tAATCGGCTTTTGTGCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCtttt                                                          <  1:5434065/93‑1 (MQ=255)
                               aaTCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTTCGCGCTAAGCttttt                                                         >  2:2207564/1‑93 (MQ=255)
                                aTCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCtttttt                                                        >  1:3966991/1‑93 (MQ=255)
                                aTCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCtttttt                                                        <  2:2367781/93‑1 (MQ=255)
                                 tCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAATCTTTTTTa                                                       >  1:3602248/1‑93 (MQ=255)
                                  cGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTAc                                                      <  1:4295009/93‑1 (MQ=255)
                                  cGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTAc                                                      <  2:4387466/93‑1 (MQ=255)
                                  cGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTAc                                                      <  2:4881812/93‑1 (MQ=255)
                                    gCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACgg                                                    <  1:2344976/93‑1 (MQ=255)
                                     cTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGa                                                   <  2:6253368/93‑1 (MQ=255)
                                     cTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGa                                                   <  1:1411986/93‑1 (MQ=255)
                                     cTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGa                                                   >  2:3083700/1‑93 (MQ=255)
                                       tttGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGaca                                                 >  1:1004242/1‑93 (MQ=255)
                                        ttGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGacac                                                <  2:2208363/93‑1 (MQ=255)
                                        ttGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGacac                                                >  1:3008159/1‑93 (MQ=255)
                                           ttCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGcc                                             >  2:4155464/1‑93 (MQ=255)
                                           ttCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGcc                                             >  2:5227197/1‑93 (MQ=255)
                                              cGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGa                                          >  2:204030/1‑93 (MQ=255)
                                              cGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGa                                          >  1:5802607/1‑93 (MQ=255)
                                               gCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGaa                                         >  2:872098/1‑93 (MQ=255)
                                                cATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAAt                                        >  1:2879160/1‑93 (MQ=255)
                                                 aTGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAAtt                                       >  1:255048/1‑93 (MQ=255)
                                                 aTGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAAtt                                       >  1:1280224/1‑93 (MQ=255)
                                                 aTGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGGCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAAtt                                       >  1:3378600/1‑93 (MQ=255)
                                                   ggggATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGGTTTTTTACGGACACGCCGGAATTgc                                     >  2:4017286/1‑93 (MQ=255)
                                                   ggggATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTgc                                     <  1:3287512/93‑1 (MQ=255)
                                                   ggggATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTgc                                     <  1:5537793/93‑1 (MQ=255)
                                                    gggATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTgcg                                    >  2:2288952/1‑93 (MQ=255)
                                                     ggATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTgcgc                                   <  2:1027498/93‑1 (MQ=255)
                                                      gATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGGATTGCGcc                                  >  1:3628099/1‑93 (MQ=255)
                                                      gATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGcc                                  >  2:3407585/1‑93 (MQ=255)
                                                      gATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGcc                                  >  1:5836725/1‑93 (MQ=255)
                                                        tACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTg                                >  2:1823269/1‑93 (MQ=255)
                                                        tACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTg                                >  1:3209044/1‑93 (MQ=255)
                                                          cTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGtt                              <  1:291855/93‑1 (MQ=255)
                                                          cTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGtt                              >  1:2884277/1‑93 (MQ=255)
                                                            ggCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTg                            <  1:6199612/93‑1 (MQ=255)
                                                             gCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTgg                           >  2:5192618/1‑93 (MQ=255)
                                                              cTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGc                          <  2:2745576/93‑1 (MQ=255)
                                                              cTGTGCGCAGTCATCGCCAACGTCTCCCGTCTGGTGATCGTTTTTTCCGCGTTAAGCCTTTTTACGGACACGCCGGAATTGCGCCTGGTTGGc                          >  2:4321500/1‑93 (MQ=255)
                                                                 tgCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGAt                       >  2:244481/1‑93 (MQ=255)
                                                                  gcgcAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATg                      <  1:2447275/93‑1 (MQ=255)
                                                                  gcgcAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATg                      <  1:5152388/93‑1 (MQ=255)
                                                                   cgcAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATgg                     <  1:5839350/93‑1 (MQ=255)
                                                                   cgcAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATgg                     <  2:5618867/93‑1 (MQ=255)
                                                                    gcAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGt                    >  2:3893498/1‑93 (MQ=255)
                                                                        tCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAAtc                >  2:2983025/1‑92 (MQ=255)
                                                                         cATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATAc               >  2:461669/1‑93 (MQ=255)
                                                                         cATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATAc               <  1:4145238/93‑1 (MQ=255)
                                                                          aTCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATAcc              <  1:6101655/93‑1 (MQ=255)
                                                                          aTCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATAcc              <  2:2180570/93‑1 (MQ=255)
                                                                           tCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCt             <  2:3146867/93‑1 (MQ=255)
                                                                           tCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCt             <  1:2048278/93‑1 (MQ=255)
                                                                           tCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCt             >  2:4303132/1‑93 (MQ=255)
                                                                            cGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTg            <  1:1111288/93‑1 (MQ=255)
                                                                            cGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTg            <  2:2861131/93‑1 (MQ=255)
                                                                               cAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCa         >  1:5758112/1‑93 (MQ=255)
                                                                               cAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCa         >  2:3106589/1‑93 (MQ=255)
                                                                                caCGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCaa        <  2:3520554/92‑1 (MQ=255)
                                                                                aaCGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCaa        >  1:2700778/1‑93 (MQ=255)
                                                                                   gTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCg     <  1:4953833/93‑1 (MQ=255)
                                                                                    tctcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGa    >  2:4067536/1‑93 (MQ=255)
                                                                                    tctcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGa    >  1:5372242/1‑93 (MQ=255)
                                                                                    tctcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGa    >  2:2483073/1‑93 (MQ=255)
                                                                                    tctcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTGTTGTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGa    <  1:1773023/93‑1 (MQ=255)
                                                                                     ctcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGAt   >  1:844415/1‑93 (MQ=255)
                                                                                      tcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATa  >  1:3015346/1‑93 (MQ=255)
                                                                                      tcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATa  <  2:5439518/93‑1 (MQ=255)
                                                                                      tcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATa  <  1:1116973/93‑1 (MQ=255)
                                                                                      tcCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATa  >  2:654127/1‑93 (MQ=255)
                                                                                          |                                                                                        
TTACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTATCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATA  >  NC_000913/1677795‑1677973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCTTTACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTATCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATAGTC  >  NC_000913/1677792‑1677976
                                                                                             |                                                                                           
TCTTTACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTG                                                                                             <  SRR4302533.131607/94‑1 (MQ=60)
    TACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTG                                                                                         <  SRR4302533.3532057/94‑1 (MQ=60)
       CTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTG                                                                                      >  SRR4302533.2198630/1‑94 (MQ=60)
         ATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAT                                                                                    <  SRR4302533.3629838/94‑1 (MQ=60)
         ATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAT                                                                                    >  SRR4302533.4630057/1‑94 (MQ=60)
         ATGCACGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGAT                                                                                    <  SRR4302533.2161428/94‑1 (MQ=60)
          TGCCCGCGAAGGGTTTGGCGAGCTAGTCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATC                                                                                   <  SRR4302533.6122562/94‑1 (MQ=60)
           GCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCG                                                                                  <  SRR4302533.2895326/94‑1 (MQ=60)
            CCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGT                                                                                 >  SRR4302533.4097154/1‑94 (MQ=60)
            CCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGT                                                                                 >  SRR4302533.5600263/1‑94 (MQ=60)
              CGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTT                                                                               >  SRR4302533.6209993/1‑94 (MQ=60)
                CGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTT                                                                             >  SRR4302533.4670601/1‑94 (MQ=60)
                CGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTT                                                                             >  SRR4302533.2166738/1‑94 (MQ=60)
                    GGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCG                                                                         <  SRR4302533.1896338/94‑1 (MQ=60)
                    GGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCG                                                                         <  SRR4302533.5582422/94‑1 (MQ=60)
                     GGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGC                                                                        >  SRR4302533.3681232/1‑94 (MQ=60)
                      GTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCG                                                                       <  SRR4302533.4577280/94‑1 (MQ=60)
                         TGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTA                                                                    >  SRR4302533.2285071/1‑94 (MQ=60)
                          GGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAA                                                                   >  SRR4302533.4747538/1‑94 (MQ=60)
                           GCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAG                                                                  <  SRR4302533.5065481/94‑1 (MQ=60)
                            CGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGC                                                                 >  SRR4302533.794065/1‑94 (MQ=60)
                             GAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCT                                                                <  SRR4302533.677462/94‑1 (MQ=60)
                              AGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTT                                                               <  SRR4302533.1547279/94‑1 (MQ=60)
                              AGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTT                                                               <  SRR4302533.5663823/94‑1 (MQ=60)
                               GCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTT                                                              >  SRR4302533.5428917/1‑94 (MQ=60)
                                 TAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTT                                                            >  SRR4302533.5837319/1‑94 (MQ=60)
                                 TAATCGGCTTTTGTGCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTT                                                            <  SRR4302533.5466789/94‑1 (MQ=60)
                                  AATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTT                                                           >  SRR4302533.3991156/1‑94 (MQ=60)
                                  AATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTT                                                           >  SRR4302533.3391108/1‑94 (MQ=60)
                                  AATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTT                                                           <  SRR4302533.3183405/94‑1 (MQ=60)
                                   ATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAATCTTTTTTA                                                          >  SRR4302533.3624417/1‑94 (MQ=60)
                                     CGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACG                                                        >  SRR4302533.2477238/1‑94 (MQ=60)
                                     CGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACG                                                        <  SRR4302533.4320839/94‑1 (MQ=60)
                                      GGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGG                                                       >  SRR4302533.4290364/1‑94 (MQ=60)
                                      GGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGG                                                       >  SRR4302533.2320818/1‑94 (MQ=60)
                                       GCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGA                                                      <  SRR4302533.2359488/94‑1 (MQ=60)
                                        CTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGAC                                                     >  SRR4302533.6298766/1‑94 (MQ=60)
                                        CTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGAC                                                     <  SRR4302533.1420522/94‑1 (MQ=60)
                                         TTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACA                                                    >  SRR4302533.1010115/1‑94 (MQ=60)
                                          TTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACAC                                                   >  SRR4302533.3026562/1‑94 (MQ=60)
                                           TTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACG                                                  <  SRR4302533.5353097/94‑1 (MQ=60)
                                            TGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGC                                                 >  SRR4302533.1350215/1‑94 (MQ=60)
                                             GTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCC                                                <  SRR4302533.393261/94‑1 (MQ=60)
                                                CCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGA                                             <  SRR4302533.3030199/94‑1 (MQ=60)
                                                CCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGA                                             >  SRR4302533.5041831/1‑94 (MQ=60)
                                                CCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGA                                             >  SRR4302533.5837657/1‑94 (MQ=60)
                                                 CGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAA                                            >  SRR4302533.6136118/1‑94 (MQ=60)
                                                 CGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGCCTGGGGATCGTTTTTTCCGGGTTAAGCTTTTTTACGGACACGCCGGAA                                            >  SRR4302533.819303/1‑94 (MQ=60)
                                                  GCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAAT                                           >  SRR4302533.2896871/1‑94 (MQ=60)
                                                   CATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATT                                          >  SRR4302533.256610/1‑94 (MQ=60)
                                                   CATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATT                                          >  SRR4302533.1287920/1‑94 (MQ=60)
                                                   CATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATT                                          <  SRR4302533.1433770/94‑1 (MQ=60)
                                                   CATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGGCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATT                                          >  SRR4302533.3399458/1‑94 (MQ=60)
                                                    ATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTG                                         >  SRR4302533.744131/1‑94 (MQ=60)
                                                      GGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCG                                       <  SRR4302533.5872409/94‑1 (MQ=60)
                                                      GGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCG                                       <  SRR4302533.5571236/94‑1 (MQ=60)
                                                      GGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCG                                       <  SRR4302533.6073205/94‑1 (MQ=60)
                                                      GGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCG                                       <  SRR4302533.3307805/94‑1 (MQ=60)
                                                        GGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGGATTGCGCC                                     >  SRR4302533.3650423/1‑94 (MQ=60)
                                                        GGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCC                                     >  SRR4302533.1635827/1‑94 (MQ=60)
                                                        GGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCC                                     >  SRR4302533.5872018/1‑94 (MQ=60)
                                                          ATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTG                                   >  SRR4302533.3228809/1‑94 (MQ=60)
                                                            ACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTT                                 >  SRR4302533.2902013/1‑94 (MQ=60)
                                                             CTGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTT                                <  SRR4302533.293636/94‑1 (MQ=60)
                                                              TGGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTG                               <  SRR4302533.220458/94‑1 (MQ=60)
                                                               GGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGG                              <  SRR4302533.6236800/94‑1 (MQ=60)
                                                               GGCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGG                              <  SRR4302533.5418635/94‑1 (MQ=60)
                                                                GCTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGC                             <  SRR4302533.1267498/94‑1 (MQ=60)
                                                                 CTGTGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCG                            >  SRR4302533.1118528/1‑94 (MQ=60)
                                                                    TGCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATG                         >  SRR4302533.999896/1‑94 (MQ=60)
                                                                     GCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGG                        <  SRR4302533.5183511/94‑1 (MQ=60)
                                                                     GCGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGG                        <  SRR4302533.2462377/94‑1 (MQ=60)
                                                                      CGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGT                       >  SRR4302533.2460997/1‑94 (MQ=60)
                                                                      CGCAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGT                       <  SRR4302533.5874655/94‑1 (MQ=60)
                                                                        CAGTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAA                     <  SRR4302533.4907696/94‑1 (MQ=60)
                                                                          GTCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATA                   <  SRR4302533.2927733/94‑1 (MQ=60)
                                                                          GTCAGCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATA                   <  SRR4302533.5709523/94‑1 (MQ=60)
                                                                           TCATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATAC                  <  SRR4302533.5545633/94‑1 (MQ=60)
                                                                            CATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACC                 <  SRR4302533.4170360/94‑1 (MQ=60)
                                                                             ATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCT                <  SRR4302533.1849971/94‑1 (MQ=60)
                                                                             ATCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCT                <  SRR4302533.6138495/94‑1 (MQ=60)
                                                                              TCGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTG               <  SRR4302533.2060906/94‑1 (MQ=60)
                                                                               CGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGG              <  SRR4302533.1117882/94‑1 (MQ=60)
                                                                               CGCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGG              >  SRR4302533.2653952/1‑94 (MQ=60)
                                                                                GCCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGC             >  SRR4302533.544952/1‑94 (MQ=60)
                                                                                 CCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCA            <  SRR4302533.3264155/94‑1 (MQ=60)
                                                                                 CCAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCA            >  SRR4302533.5792860/1‑94 (MQ=60)
                                                                                  CAACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAA           >  SRR4302533.2717348/1‑94 (MQ=60)
                                                                                    ACGTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATC         <  SRR4302533.1923638/94‑1 (MQ=60)
                                                                                      GTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGA       <  SRR4302533.4983839/94‑1 (MQ=60)
                                                                                      GTCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGA       >  SRR4302533.5404518/1‑94 (MQ=60)
                                                                                       TCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGAT      >  SRR4302533.849351/1‑94 (MQ=60)
                                                                                       TCTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTGTTGTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGAT      <  SRR4302533.1783823/94‑1 (MQ=60)
                                                                                        CTCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATA     >  SRR4302533.3033787/1‑94 (MQ=60)
                                                                                         TCCTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATAG    <  SRR4302533.1123601/94‑1 (MQ=60)
                                                                                           CTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATAGTC  >  SRR4302533.2728743/1‑94 (MQ=60)
                                                                                           CTGTCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATAGTC  <  SRR4302533.2441037/94‑1 (MQ=60)
                                                                                             |                                                                                           
TCTTTACCTATGCCCGCGAAGGGTTTGGCGAGCTAATCGGCTTTTGTTCCGCATGGGGATACTGGCTGTGCGCAGTCATCGCCAACGTCTCCTATCTGGTGATCGTTTTTTCCGCGTTAAGCTTTTTTACGGACACGCCGGAATTGCGCCTGTTTGGCGATGGTAATACCTGGCAATCGATAGTC  >  NC_000913/1677792‑1677976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑