Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,680,393 T→C W74R (TGG→CGG)  rstA → response transcriptional regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,680,3930TC100.0% 620.8 / NA 191W74R (TGG→CGG) rstAresponse transcriptional regulatory protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (73/118);  total (73/118)

Only 100 of 197 total aligned reads displayed.

ATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTC  >  NC_000913/1680303‑1680482
                                                                                          |                                                                                         
aTTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCgg                                                                                         <  1:2400589/93‑1 (MQ=255)
  tttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTc                                                                                       >  2:2344330/1‑93 (MQ=255)
  tttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTc                                                                                       <  1:6029289/93‑1 (MQ=255)
  tttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTc                                                                                       <  2:275275/93‑1 (MQ=255)
  tttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTc                                                                                       <  2:3586191/93‑1 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      <  1:4782137/93‑1 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      <  2:1273140/93‑1 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      >  1:4859486/1‑93 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      <  2:5741894/93‑1 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      >  1:5647869/1‑93 (MQ=255)
   ttGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCt                                                                                      <  1:3556135/93‑1 (MQ=255)
       gagaAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGAc                                                                                  >  2:1455898/1‑93 (MQ=255)
        agaAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGAcc                                                                                 <  2:5029771/93‑1 (MQ=255)
         gaAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCg                                                                                >  2:4391276/1‑93 (MQ=255)
          aaaaTCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGa                                                                               <  1:534058/93‑1 (MQ=255)
           aaaTCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGAt                                                                              <  1:3967273/93‑1 (MQ=255)
           aaaTCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGAt                                                                              <  2:1804645/93‑1 (MQ=255)
              tCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGt                                                                           >  1:984843/1‑93 (MQ=255)
              tCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGt                                                                           >  1:2595387/1‑93 (MQ=255)
              accGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGt                                                                           <  1:4154273/92‑1 (MQ=255)
                cGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGttc                                                                         >  1:3038133/1‑93 (MQ=255)
                cGGATTTGGTGTTACGCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGttc                                                                         <  1:1003502/93‑1 (MQ=255)
                  gATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGCACCGATTGttctt                                                                       >  1:664970/1‑93 (MQ=255)
                   aTTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGttcttc                                                                      >  2:4980117/1‑93 (MQ=255)
                    tttGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTtcttct                                                                     <  2:800819/93‑1 (MQ=255)
                    tttGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTtcttct                                                                     >  2:4055273/1‑93 (MQ=255)
                    tttGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTtcttct                                                                     >  1:3280505/1‑93 (MQ=255)
                        gtgtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAAcc                                                                 <  1:3710023/93‑1 (MQ=255)
                        gtgtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAAcc                                                                 <  1:1894028/93‑1 (MQ=255)
                        gtgtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAAcc                                                                 <  2:5915792/93‑1 (MQ=255)
                          gtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACctc                                                               <  1:1814945/93‑1 (MQ=255)
                          gtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACctc                                                               <  1:1099977/93‑1 (MQ=255)
                          gtTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACctc                                                               >  2:5556915/1‑93 (MQ=255)
                            tACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACctctc                                                             <  2:2027085/93‑1 (MQ=255)
                             aCTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACctctct                                                            >  1:6274082/1‑93 (MQ=255)
                              cTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCtctctc                                                           >  1:346067/1‑93 (MQ=255)
                              cTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCtctctc                                                           <  2:6257302/93‑1 (MQ=255)
                                cGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGa                                                         >  2:1591115/1‑93 (MQ=255)
                                 gACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGAt                                                        <  2:3535088/93‑1 (MQ=255)
                                 gACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGAt                                                        <  2:5785888/93‑1 (MQ=255)
                                 gACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGAt                                                        <  2:2646767/93‑1 (MQ=255)
                                 gACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGAt                                                        <  2:2600100/93‑1 (MQ=255)
                                  aCATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATa                                                       >  1:227195/1‑93 (MQ=255)
                                     tcatGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCg                                                    >  1:2653613/1‑93 (MQ=255)
                                       atGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGat                                                  >  1:1326619/1‑93 (MQ=255)
                                       atGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGat                                                  <  1:4832041/93‑1 (MQ=255)
                                        tGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGata                                                 >  1:2326838/1‑93 (MQ=255)
                                        tGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGata                                                 <  1:1002141/93‑1 (MQ=255)
                                         gCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGatat                                                <  2:3055137/93‑1 (MQ=255)
                                         gCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGatat                                                <  1:5666012/93‑1 (MQ=255)
                                          cTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATg                                               >  2:2482929/1‑93 (MQ=255)
                                           tACCAGGCAAGGACGGGATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGAACGATTGTTCTTCTAACCTCGCTCGATAGCGATATGa                                              <  2:3430433/93‑1 (MQ=255)
                                           tACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGa                                              <  1:3878705/93‑1 (MQ=255)
                                           tACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGa                                              >  1:1619867/1‑93 (MQ=255)
                                            aCCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGaa                                             >  1:4659871/1‑93 (MQ=255)
                                             ccAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAAc                                            >  2:3852485/1‑93 (MQ=255)
                                               aGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACca                                          >  2:3285108/1‑93 (MQ=255)
                                               aGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACca                                          >  2:3872019/1‑93 (MQ=255)
                                                 gCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACcaca                                        <  1:6158675/93‑1 (MQ=255)
                                                 gCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACcaca                                        <  1:4949384/93‑1 (MQ=255)
                                                   aaGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATc                                      >  2:5018702/1‑93 (MQ=255)
                                                   aaGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATc                                      <  1:1946244/93‑1 (MQ=255)
                                                   aaGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATc                                      <  1:3930357/93‑1 (MQ=255)
                                                   aaGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATc                                      <  2:1100286/93‑1 (MQ=255)
                                                    aGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGGTTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATcc                                     <  1:3372997/93‑1 (MQ=255)
                                                     ggACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCt                                    <  2:4961841/93‑1 (MQ=255)
                                                     ggACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCt                                    >  1:1463028/1‑93 (MQ=255)
                                                     ggACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCt                                    <  1:2811183/93‑1 (MQ=255)
                                                      gACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTg                                   <  1:6002925/93‑1 (MQ=255)
                                                      gACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTg                                   >  2:5339136/1‑93 (MQ=255)
                                                      gACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTg                                   >  1:4698984/1‑93 (MQ=255)
                                                       aCGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTgg                                  <  1:3140904/93‑1 (MQ=255)
                                                         ggCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCa                                >  2:372110/1‑93 (MQ=255)
                                                          gCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCAc                               >  2:4178490/1‑93 (MQ=255)
                                                            aTGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTg                             <  2:4491921/93‑1 (MQ=255)
                                                             tGACCATTTGTCGTGATTTACGCGCAATGCGGTCTGGACCGATTGTTCTTCTAGCCTCTCTCGATAGCGATATGAACCACATCCTGGCACTgg                            <  1:2790414/93‑1 (MQ=255)
                                                             tGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTgg                            <  1:5906868/93‑1 (MQ=255)
                                                               aCCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGaa                          >  1:5118004/1‑93 (MQ=255)
                                                                 cATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAAt                        >  2:1858008/1‑93 (MQ=255)
                                                                    ttGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATggg                     <  1:1722522/93‑1 (MQ=255)
                                                                    ttGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATggg                     <  2:473588/93‑1 (MQ=255)
                                                                     tGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGt                    <  2:3259809/93‑1 (MQ=255)
                                                                     tGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGt                    <  1:4458147/93‑1 (MQ=255)
                                                                       tCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGc                  <  2:2536940/93‑1 (MQ=255)
                                                                       tCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGc                  >  2:3945627/1‑93 (MQ=255)
                                                                        cGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGcc                 <  2:6036241/93‑1 (MQ=255)
                                                                        cGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGcc                 <  1:1409142/93‑1 (MQ=255)
                                                                          tGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTg               <  1:5581497/93‑1 (MQ=255)
                                                                           gATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGc              >  1:4020463/1‑93 (MQ=255)
                                                                             tttACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGa            <  1:4595554/93‑1 (MQ=255)
                                                                             tttACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGa            <  1:826187/93‑1 (MQ=255)
                                                                              ttACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGAc           <  2:337599/93‑1 (MQ=255)
                                                                              ttACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGACACTGGAAATGGGAGCCTGCGAc           >  1:5198711/1‑93 (MQ=255)
                                                                                 cgcgCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACtat        <  1:2923870/93‑1 (MQ=255)
                                                                                 cgcgCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACtat        >  1:22324/1‑93 (MQ=255)
                                                                                  gcgcAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACtata       <  1:5521700/93‑1 (MQ=255)
                                                                                  gcgcAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACtata       <  1:75651/93‑1 (MQ=255)
                                                                                   cgcAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTatat      <  2:740166/93‑1 (MQ=255)
                                                                                    gcAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATAtt     >  2:3129391/1‑93 (MQ=255)
                                                                                     cAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATtc    <  2:415437/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTC  >  NC_000913/1680303‑1680482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAA  >  NC_000913/1680300‑1680486
                                                                                             |                                                                                             
ACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGC                                                                                               >  SRR4302533.2795738/1‑94 (MQ=60)
ACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGC                                                                                               >  SRR4302533.3539702/1‑94 (MQ=60)
 CCATTTTGCGAGAAAATCCGGATTTTGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCG                                                                                              <  SRR4302533.2779987/94‑1 (MQ=60)
  CATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGG                                                                                             <  SRR4302533.5391950/94‑1 (MQ=60)
   ATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGT                                                                                            <  SRR4302533.2415414/94‑1 (MQ=60)
    TTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTC                                                                                           <  SRR4302533.1449359/94‑1 (MQ=60)
     TTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCT                                                                                          >  SRR4302533.5682011/1‑94 (MQ=60)
     TTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCT                                                                                          >  SRR4302533.4888941/1‑94 (MQ=60)
     TTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCT                                                                                          <  SRR4302533.6065831/94‑1 (MQ=60)
     TTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCT                                                                                          <  SRR4302533.2909994/94‑1 (MQ=60)
      TTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTG                                                                                         <  SRR4302533.4811111/94‑1 (MQ=60)
      TTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTG                                                                                         <  SRR4302533.3578053/94‑1 (MQ=60)
       TGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGG                                                                                        <  SRR4302533.4009494/94‑1 (MQ=60)
             AAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGAT                                                                                  <  SRR4302533.537237/94‑1 (MQ=60)
             AAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGAT                                                                                  >  SRR4302533.1360058/1‑94 (MQ=60)
             AAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGAT                                                                                  <  SRR4302533.1633833/94‑1 (MQ=60)
              AAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATT                                                                                 <  SRR4302533.3991439/94‑1 (MQ=60)
               AATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTG                                                                                >  SRR4302533.6016768/1‑94 (MQ=60)
                ATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGT                                                                               >  SRR4302533.2611338/1‑94 (MQ=60)
                ATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGT                                                                               >  SRR4302533.2377831/1‑94 (MQ=60)
                ATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGT                                                                               >  SRR4302533.990612/1‑94 (MQ=60)
                 ACCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTT                                                                              <  SRR4302533.4179446/94‑1 (MQ=60)
                  CCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTC                                                                             >  SRR4302533.3056723/1‑94 (MQ=60)
                  CCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTC                                                                             >  SRR4302533.2546854/1‑94 (MQ=60)
                   CGNNNNNGNTNNTNCTCGANNNCANGCNACNANGCAAGGNCGNCATGACCATTTGTNGNGATTTACGCNCNNAGCGGTCTGGACCGATTGTTCT                                                                            <  SRR4302533.1008893/94‑1 (MQ=48)
                   CGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCT                                                                            <  SRR4302533.4890652/94‑1 (MQ=60)
                   CGGATTTGGTGTTACGCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCT                                                                            <  SRR4302533.1009367/94‑1 (MQ=60)
                    GGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTT                                                                           >  SRR4302533.2326035/1‑94 (MQ=60)
                    GGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTT                                                                           <  SRR4302533.3472929/94‑1 (MQ=60)
                    GGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTT                                                                           <  SRR4302533.2632579/94‑1 (MQ=60)
                    GGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGCACCGATTGTTCTT                                                                           >  SRR4302533.668897/1‑94 (MQ=60)
                     GATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTC                                                                          >  SRR4302533.4731856/1‑94 (MQ=60)
                      ATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCT                                                                         >  SRR4302533.3300756/1‑94 (MQ=60)
                      ATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCT                                                                         <  SRR4302533.3962083/94‑1 (MQ=60)
                       TTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACCGGCAAGCCGGTCTGGACCGATTGTTCTTTTA                                                                        >  SRR4302533.3933968/1‑94 (MQ=60)
                         TGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAAC                                                                      <  SRR4302533.1328610/94‑1 (MQ=60)
                           GTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCT                                                                    <  SRR4302533.3732808/94‑1 (MQ=60)
                           GTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCT                                                                    <  SRR4302533.1905591/94‑1 (MQ=60)
                             GTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCT                                                                  <  SRR4302533.1826024/94‑1 (MQ=60)
                             GTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCT                                                                  <  SRR4302533.1106497/94‑1 (MQ=60)
                               TACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCT                                                                >  SRR4302533.6311555/1‑94 (MQ=60)
                                ACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTC                                                               >  SRR4302533.348179/1‑94 (MQ=60)
                                    GACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATA                                                           >  SRR4302533.2810873/1‑94 (MQ=60)
                                    GACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATA                                                           >  SRR4302533.3784299/1‑94 (MQ=60)
                                    GACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATA                                                           >  SRR4302533.228607/1‑94 (MQ=60)
                                      CATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGC                                                         <  SRR4302533.882457/94‑1 (MQ=60)
                                       ATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCG                                                        >  SRR4302533.2669913/1‑94 (MQ=60)
                                         CATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGAT                                                      >  SRR4302533.1334578/1‑94 (MQ=60)
                                          ATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATA                                                     <  SRR4302533.4861328/94‑1 (MQ=60)
                                          ATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATA                                                     >  SRR4302533.2341243/1‑94 (MQ=60)
                                           TGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATAT                                                    <  SRR4302533.1007992/94‑1 (MQ=60)
                                            GCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATG                                                   <  SRR4302533.3368618/94‑1 (MQ=60)
                                            GCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATG                                                   <  SRR4302533.3099019/94‑1 (MQ=60)
                                            GCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATG                                                   <  SRR4302533.5700241/94‑1 (MQ=60)
                                             CTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGA                                                  >  SRR4302533.4454290/1‑94 (MQ=60)
                                             CTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGA                                                  >  SRR4302533.1629680/1‑94 (MQ=60)
                                              TACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAA                                                 >  SRR4302533.4688111/1‑94 (MQ=60)
                                              TACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAA                                                 <  SRR4302533.3902375/94‑1 (MQ=60)
                                                CCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACC                                               <  SRR4302533.4145717/94‑1 (MQ=60)
                                                CCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCAGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACC                                               <  SRR4302533.5594972/94‑1 (MQ=60)
                                                 CAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCA                                              <  SRR4302533.4705406/94‑1 (MQ=60)
                                                    GCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACAT                                           <  SRR4302533.4979361/94‑1 (MQ=60)
                                                    GCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACAT                                           <  SRR4302533.6195717/94‑1 (MQ=60)
                                                    GCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACAT                                           <  SRR4302533.187671/94‑1 (MQ=60)
                                                      AAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCC                                         <  SRR4302533.1958111/94‑1 (MQ=60)
                                                      AAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCC                                         <  SRR4302533.3954351/94‑1 (MQ=60)
                                                       AGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGGTTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCT                                        <  SRR4302533.3393826/94‑1 (MQ=60)
                                                       AGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCT                                        >  SRR4302533.5659641/1‑94 (MQ=60)
                                                       AGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCT                                        <  SRR4302533.632397/94‑1 (MQ=60)
                                                       AGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCT                                        >  SRR4302533.1471847/1‑94 (MQ=60)
                                                        GGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTG                                       <  SRR4302533.2139815/94‑1 (MQ=60)
                                                        GGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTG                                       >  SRR4302533.4727468/1‑94 (MQ=60)
                                                        GGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTG                                       <  SRR4302533.2828483/94‑1 (MQ=60)
                                                         GACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGG                                      <  SRR4302533.6039299/94‑1 (MQ=60)
                                                          ACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGC                                     <  SRR4302533.3160213/94‑1 (MQ=60)
                                                          ACGGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGC                                     >  SRR4302533.6121929/1‑94 (MQ=60)
                                                            GGCATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCAC                                   >  SRR4302533.5699317/1‑94 (MQ=60)
                                                               ATGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGG                                <  SRR4302533.484967/94‑1 (MQ=60)
                                                                TGACCATTTGTCGTGATTTACGCGCAATGCGGTCTGGACCGATTGTTCTTCTAGCCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGA                               <  SRR4302533.2807577/94‑1 (MQ=60)
                                                                TGACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGA                               <  SRR4302533.5942538/94‑1 (MQ=60)
                                                                 GACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAA                              >  SRR4302533.5148928/1‑94 (MQ=60)
                                                                  ACCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAA                             >  SRR4302533.354936/1‑94 (MQ=60)
                                                                   CCATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAAT                            <  SRR4302533.780985/94‑1 (MQ=60)
                                                                    CATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATG                           >  SRR4302533.5754007/1‑94 (MQ=60)
                                                                    CATTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATG                           <  SRR4302533.3047207/94‑1 (MQ=60)
                                                                      TTTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGG                         >  SRR4302533.3200919/1‑94 (MQ=60)
                                                                       TTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGT                        <  SRR4302533.5147063/94‑1 (MQ=60)
                                                                       TTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGT                        <  SRR4302533.6301207/94‑1 (MQ=60)
                                                                       TTGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGT                        <  SRR4302533.1732966/94‑1 (MQ=60)
                                                                        TGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTG                       <  SRR4302533.2265/94‑1 (MQ=60)
                                                                        TGTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTG                       <  SRR4302533.4485111/94‑1 (MQ=60)
                                                                         GTCGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGC                      <  SRR4302533.4568244/94‑1 (MQ=60)
                                                                           CGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCT                    <  SRR4302533.4878793/94‑1 (MQ=60)
                                                                           CGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCT                    >  SRR4302533.2705518/1‑94 (MQ=60)
                                                                           CGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCT                    <  SRR4302533.6051713/94‑1 (MQ=60)
                                                                           CGTGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCT                    <  SRR4302533.1417663/94‑1 (MQ=60)
                                                                             TGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGC                  <  SRR4302533.5615224/94‑1 (MQ=60)
                                                                             TGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGC                  <  SRR4302533.5437162/94‑1 (MQ=60)
                                                                             TGATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGC                  >  SRR4302533.4044944/1‑94 (MQ=60)
                                                                              GATTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCG                 >  SRR4302533.1058722/1‑94 (MQ=60)
                                                                                TTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGAC               <  SRR4302533.831031/94‑1 (MQ=60)
                                                                                TTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGAC               <  SRR4302533.4623395/94‑1 (MQ=60)
                                                                                TTTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGACACTGGAAATGGGAGCCTGCGAC               >  SRR4302533.5230059/1‑94 (MQ=60)
                                                                                 TTACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACT              <  SRR4302533.1495902/94‑1 (MQ=60)
                                                                                  TACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTA             <  SRR4302533.3688833/94‑1 (MQ=60)
                                                                                  TACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTA             <  SRR4302533.5227167/94‑1 (MQ=60)
                                                                                   ACGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTAT            >  SRR4302533.22472/1‑94 (MQ=60)
                                                                                    CGCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATA           <  SRR4302533.2941770/94‑1 (MQ=60)
                                                                                     GCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATAT          <  SRR4302533.5555040/94‑1 (MQ=60)
                                                                                     GCGCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATAT          <  SRR4302533.76143/94‑1 (MQ=60)
                                                                                       GCAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTC        >  SRR4302533.5310603/1‑94 (MQ=60)
                                                                                        CAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCT       <  SRR4302533.1940114/94‑1 (MQ=60)
                                                                                        CAAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCT       >  SRR4302533.70747/1‑94 (MQ=60)
                                                                                         AAAGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTC      >  SRR4302533.1768262/1‑94 (MQ=60)
                                                                                           AGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAA    >  SRR4302533.229230/1‑94 (MQ=60)
                                                                                           AGCGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAA    >  SRR4302533.5843705/1‑94 (MQ=60)
                                                                                             CGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAA  <  SRR4302533.3420361/94‑1 (MQ=60)
                                                                                             |                                                                                             
ACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGACCATTTGTCGTGATTTACGCGCAAAGTGGTCTGGACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAA  >  NC_000913/1680300‑1680486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑