Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,729,644	T→C	M845T (ATG→ACG)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,729,644	0	T	C	100.0%	805.1 / NA	248	M845T (ATG→ACG)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/112); total (136/112)

Only 100 of 257 total aligned reads displayed.

TCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG  >  NC_000913/1729555‑1729733

tCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAcgcg                                                                                        >  1:5778716/1‑93 (MQ=255)

tCAGGAATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAcgcg                                                                                        <  2:6001714/93‑1 (MQ=255)

   gggATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCg                                                                                     >  2:3982703/1‑93 (MQ=255)

      atatCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCt                                                                                  <  2:1016767/93‑1 (MQ=255)

       tatCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTg                                                                                 >  2:1042568/1‑93 (MQ=255)

        atCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGa                                                                                >  2:5528052/1‑93 (MQ=255)

        atCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGa                                                                                >  1:3630902/1‑93 (MQ=255)

         tCCGGATTTTCCGGTCATTCCCGAACCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGaa                                                                               <  2:1790305/93‑1 (MQ=255)

          ccGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAAc                                                                              <  1:1560163/93‑1 (MQ=255)

            ggATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACgg                                                                            <  2:2923115/93‑1 (MQ=255)

             gATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGt                                                                           >  2:3680097/1‑93 (MQ=255)

              aTTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTg                                                                          <  2:3133617/93‑1 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         <  1:6274662/93‑1 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         >  2:700710/1‑93 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         >  2:3017075/1‑93 (MQ=255)

               ttttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTgg                                                                         <  2:1741450/93‑1 (MQ=255)

                tttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGc                                                                        <  1:2032933/93‑1 (MQ=255)

                 ttCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCg                                                                       >  1:5063019/1‑93 (MQ=255)

                  tCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGa                                                                      >  1:5132993/1‑93 (MQ=255)

                     ggTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAt                                                                   >  1:2312222/1‑93 (MQ=255)

                      gTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAtt                                                                  >  2:565651/1‑93 (MQ=255)

                      gTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAtt                                                                  <  2:4566820/93‑1 (MQ=255)

                       tCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTc                                                                 >  1:805712/1‑93 (MQ=255)

                        cATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCa                                                                >  2:2319157/1‑93 (MQ=255)

                        cATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCa                                                                <  1:4292097/93‑1 (MQ=255)

                            ctcGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAata                                                            <  2:2567326/93‑1 (MQ=255)

                                 aaCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGa                                                       >  2:663247/1‑93 (MQ=255)

                                  aCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAt                                                      <  1:5862701/93‑1 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    >  1:112660/1‑93 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    >  2:4218110/1‑93 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    <  1:2696693/93‑1 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    <  2:3031812/93‑1 (MQ=255)

                                    ccTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGt                                                    >  1:1909411/1‑93 (MQ=255)

                                     cTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTa                                                   <  2:2755122/93‑1 (MQ=255)

                                      tACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTaa                                                  >  1:6067241/1‑93 (MQ=255)

                                       aCGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAAc                                                 <  2:4771118/93‑1 (MQ=255)

                                        cgcgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACg                                                >  1:2526337/1‑93 (MQ=255)

                                         gcgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGa                                               >  1:3297392/1‑93 (MQ=255)

                                          cgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAc                                              <  2:146101/93‑1 (MQ=255)

                                          cgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAc                                              <  2:5763978/93‑1 (MQ=255)

                                          cgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAc                                              >  2:824190/1‑93 (MQ=255)

                                          cgAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAc                                              >  1:4724585/1‑93 (MQ=255)

                                           gAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAcc                                             >  1:5698241/1‑93 (MQ=255)

                                            aaTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCa                                            >  1:4915564/1‑93 (MQ=255)

                                             aTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           >  1:3237473/1‑93 (MQ=255)

                                             aTGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           <  2:1575443/93‑1 (MQ=255)

                                             aTGTCTGAAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAc                                           >  2:1672280/1‑93 (MQ=255)

                                              tGTCTGCAAGATGTTTATGCTCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACt                                          >  1:5580558/1‑93 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         <  1:3561586/93‑1 (MQ=255)

                                               gTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGGTTGACGCGTCGCCTGCACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTa                                         >  2:2340880/1‑93 (MQ=255)

                                                tCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAc                                        >  1:2556651/1‑93 (MQ=255)

                                                tCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAc                                        <  2:3475589/93‑1 (MQ=255)

                                                tCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAc                                        >  1:1988980/1‑93 (MQ=255)

                                                  tGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGc                                      >  1:5205348/1‑93 (MQ=255)

                                                  tGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGc                                      >  1:2168750/1‑93 (MQ=255)

                                                  tGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGc                                      >  2:3709578/1‑93 (MQ=255)

                                                  tGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGc                                      >  1:5394040/1‑93 (MQ=255)

                                                   gCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGcc                                     <  1:5251400/93‑1 (MQ=255)

                                                   gCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGcc                                     >  2:2219994/1‑93 (MQ=255)

                                                     aaGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCt                                   <  1:5964281/93‑1 (MQ=255)

                                                     aaGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCt                                   >  2:1974356/1‑93 (MQ=255)

                                                      aGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAGCGACCACTACGCCCTc                                  >  2:2425472/1‑93 (MQ=255)

                                                      aGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTc                                  >  2:5633646/1‑93 (MQ=255)

                                                       gATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCg                                 >  2:449652/1‑93 (MQ=255)

                                                       gATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCg                                 <  1:4340721/93‑1 (MQ=255)

                                                        aTGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTGACGACCACTACGCCCTCGc                                <  2:6133740/93‑1 (MQ=255)

                                                         tGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGcc                               >  2:5572997/1‑93 (MQ=255)

                                                            ttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCttt                            <  2:211503/93‑1 (MQ=255)

                                                            ttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCttt                            <  1:3128646/93‑1 (MQ=255)

                                                            ttATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCttt                            <  1:4978501/93‑1 (MQ=255)

                                                             tATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTc                           <  2:4274005/93‑1 (MQ=255)

                                                              aTGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCg                          >  1:184345/1‑93 (MQ=255)

                                                                 aTCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCca                       <  1:4178758/93‑1 (MQ=255)

                                                                  tCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCcac                      >  2:3537593/1‑93 (MQ=255)

                                                                    ttCCCGCACTGGAACGTTTGACGCGTGGCCTGAACGGTGGCGAAACTCAAATATCCGATGTAATGACCACTACGCCCTCGCCTTTCGCCACaa                    >  1:4115334/1‑93 (MQ=255)

                                                                      cccGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGt                  >  2:3259685/1‑93 (MQ=255)

                                                                        cGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGttt                <  2:5454897/93‑1 (MQ=255)

                                                                        cGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGttt                >  2:4082091/1‑93 (MQ=255)

                                                                        cGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGtta                >  1:6173530/1‑92 (MQ=255)

                                                                         gcgcTGGAACGTTTGACGCGTCGCCGGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTa               <  2:593930/90‑1 (MQ=255)

                                                                         gCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTa               <  1:4157678/93‑1 (MQ=255)

                                                                          cACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAt              >  1:241468/1‑93 (MQ=255)

                                                                          cACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAt              <  1:88680/93‑1 (MQ=255)

                                                                           aCTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGCTTAtt             >  2:5281566/1‑93 (MQ=255)

                                                                            cTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTg            <  2:5392290/93‑1 (MQ=255)

                                                                            cTGGAACGTTTCACGCTTCGCCTGAACGGTGGCGAAATTCAAATATCCGAGGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTg            <  2:460316/93‑1 (MQ=255)

                                                                             tGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGt           >  1:5622472/1‑93 (MQ=255)

                                                                             tGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGt           <  2:486643/93‑1 (MQ=255)

                                                                               gAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTc         >  1:265319/1‑93 (MQ=255)

                                                                               gAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTc         <  1:3037420/93‑1 (MQ=255)

                                                                                aaCGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCg        <  2:3175774/93‑1 (MQ=255)

                                                                                 aCGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACCAGTTTATTGTTCgg       >  2:1623842/1‑93 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    >  2:1318645/1‑93 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    >  2:2286748/1‑93 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    >  1:2832/1‑93 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    <  1:151088/93‑1 (MQ=255)

                                                                                    tttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTa    <  1:1491987/93‑1 (MQ=255)

                                                                                     ttGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTAt   <  1:3864111/93‑1 (MQ=255)

                                                                                      tGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATg  <  1:4621871/93‑1 (MQ=255)

                                                                                      tGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATg  <  2:6253519/93‑1 (MQ=255)

TCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG  >  NC_000913/1729555‑1729733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCGC  >  NC_000913/1729551‑1729737

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAC                                                                                               <  SRR4302533.2772636/94‑1 (MQ=60)

   CTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCG                                                                                            >  SRR4302533.5658920/1‑94 (MQ=60)

   CTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCG                                                                                            >  SRR4302533.5813621/1‑94 (MQ=60)

      AGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCG                                                                                         <  SRR4302533.6079058/94‑1 (MQ=60)

          ATATCCGGATTTTCCGGTCATTCTCGAAGCCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTG                                                                                     <  SRR4302533.32130/94‑1 (MQ=60)

          ATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTG                                                                                     >  SRR4302533.2446896/1‑94 (MQ=60)

           TATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGA                                                                                    >  SRR4302533.5205889/1‑94 (MQ=60)

           TATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGA                                                                                    >  SRR4302533.3653240/1‑94 (MQ=60)

            ATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAA                                                                                   <  SRR4302533.616917/94‑1 (MQ=60)

            ATCCGGATTTTCCAGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAA                                                                                   <  SRR4302533.3625905/94‑1 (MQ=60)

             TCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAAC                                                                                  >  SRR4302533.5747317/1‑94 (MQ=60)

              CCGGATTTTCGGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACG                                                                                 >  SRR4302533.1505323/1‑94 (MQ=60)

              CCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACG                                                                                 <  SRR4302533.1569559/94‑1 (MQ=60)

              CCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACG                                                                                 <  SRR4302533.5661640/94‑1 (MQ=60)

               CGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGG                                                                                <  SRR4302533.3420032/94‑1 (MQ=60)

                GGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGT                                                                               <  SRR4302533.1883493/94‑1 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                              <  SRR4302533.5863476/94‑1 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                              <  SRR4302533.5190562/94‑1 (MQ=60)

                 GATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTG                                                                              >  SRR4302533.3264551/1‑94 (MQ=60)

                  ATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGG                                                                             >  SRR4302533.616555/1‑94 (MQ=60)

                  ATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGG                                                                             <  SRR4302533.2598531/94‑1 (MQ=60)

                   TTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGC                                                                            <  SRR4302533.6312136/94‑1 (MQ=60)

                    TTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCG                                                                           <  SRR4302533.2045477/94‑1 (MQ=60)

                    TTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCG                                                                           <  SRR4302533.3680829/94‑1 (MQ=60)

                    TTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCG                                                                           >  SRR4302533.5093610/1‑94 (MQ=60)

                     TTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGA                                                                          >  SRR4302533.5164002/1‑94 (MQ=60)

                        CGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAAT                                                                       >  SRR4302533.2326548/1‑94 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                      >  SRR4302533.2613430/1‑94 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                      <  SRR4302533.6055795/94‑1 (MQ=60)

                         GGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATT                                                                      >  SRR4302533.2806263/1‑94 (MQ=60)

                          GTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTC                                                                     >  SRR4302533.810447/1‑94 (MQ=60)

                            CATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAA                                                                   <  SRR4302533.4317909/94‑1 (MQ=60)

                              TTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAAT                                                                 <  SRR4302533.2203138/94‑1 (MQ=60)

                               TCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATA                                                                <  SRR4302533.4351424/94‑1 (MQ=60)

                               TCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATA                                                                <  SRR4302533.1357783/94‑1 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACTGTGGCGAAATTCAAATAT                                                               >  SRR4302533.2475133/1‑94 (MQ=60)

                                CTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATAT                                                               <  SRR4302533.5010988/94‑1 (MQ=60)

                                 TCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATC                                                              >  SRR4302533.4671581/1‑94 (MQ=60)

                                  CGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCC                                                             >  SRR4302533.2543999/1‑94 (MQ=60)

                                   GAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCG                                                            >  SRR4302533.3897496/1‑94 (MQ=60)

                                   GAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCG                                                            <  SRR4302533.2152909/94‑1 (MQ=60)

                                     AACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGAT                                                          >  SRR4302533.5364747/1‑94 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                         <  SRR4302533.3949234/94‑1 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                         <  SRR4302533.5898147/94‑1 (MQ=60)

                                      ACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATG                                                         <  SRR4302533.5865335/94‑1 (MQ=60)

                                       CCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGT                                                        >  SRR4302533.113372/1‑94 (MQ=60)

                                       CCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGT                                                        >  SRR4302533.1921058/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                       <  SRR4302533.2713218/94‑1 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                       >  SRR4302533.4203080/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                       >  SRR4302533.5962831/1‑94 (MQ=60)

                                        CCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTA                                                       >  SRR4302533.2917808/1‑94 (MQ=60)

                                         CTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGNNAAATTCAAATATCNNANGNAA                                                      >  SRR4302533.6228738/1‑94 (MQ=60)

                                         CTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAA                                                      <  SRR4302533.5616790/94‑1 (MQ=60)

                                         CTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAA                                                      >  SRR4302533.3147396/1‑94 (MQ=60)

                                         CTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAA                                                      >  SRR4302533.6103957/1‑94 (MQ=60)

                                          TACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAAC                                                     <  SRR4302533.426514/94‑1 (MQ=60)

                                           ACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACG                                                    >  SRR4302533.4825762/1‑94 (MQ=60)

                                           ACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACG                                                    >  SRR4302533.2541890/1‑94 (MQ=60)

                                           ACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACG                                                    >  SRR4302533.1510579/1‑94 (MQ=60)

                                            CGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGA                                                   >  SRR4302533.3317741/1‑94 (MQ=60)

                                             GCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGAC                                                  >  SRR4302533.4753232/1‑94 (MQ=60)

                                              CGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACC                                                 >  SRR4302533.5732659/1‑94 (MQ=60)

                                               GAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCA                                                >  SRR4302533.4945339/1‑94 (MQ=60)

                                               GAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCA                                                >  SRR4302533.6223602/1‑94 (MQ=60)

                                                AATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCAC                                               >  SRR4302533.3257422/1‑94 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGCTCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACT                                              >  SRR4302533.5614282/1‑94 (MQ=60)

                                                 ATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGTACGTTTGACGCGTCGCCTGAACTGTGGCGACATTCAAATATCCGATGGAACGTGCACT                                              >  SRR4302533.5462407/1‑94 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            >  SRR4302533.1926762/1‑94 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            <  SRR4302533.3583532/94‑1 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            <  SRR4302533.5156068/94‑1 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            >  SRR4302533.2001150/1‑94 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            <  SRR4302533.5026560/94‑1 (MQ=60)

                                                   GTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTAC                                            >  SRR4302533.2572374/1‑94 (MQ=60)

                                                     CTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGC                                          >  SRR4302533.5236715/1‑94 (MQ=60)

                                                     CTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGC                                          >  SRR4302533.5426450/1‑94 (MQ=60)

                                                     CTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGC                                          >  SRR4302533.2182091/1‑94 (MQ=60)

                                                      TGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCC                                         >  SRR4302533.1682734/1‑94 (MQ=60)

                                                       GCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCC                                        <  SRR4302533.5348453/94‑1 (MQ=60)

                                                       GCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCC                                        <  SRR4302533.5282954/94‑1 (MQ=60)

                                                         AAGATGTTTATGATCTTCCCTCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTC                                      <  SRR4302533.3240451/94‑1 (MQ=60)

                                                         AAGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTC                                      <  SRR4302533.6000369/94‑1 (MQ=60)

                                                          AGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCG                                     >  SRR4302533.827165/1‑94 (MQ=60)

                                                          AGATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCG                                     <  SRR4302533.2673713/94‑1 (MQ=60)

                                                           GATGTTTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGC                                    <  SRR4302533.4366884/94‑1 (MQ=60)

                                                                TTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTC                               >  SRR4302533.4335357/1‑94 (MQ=60)

                                                                TTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTC                               <  SRR4302533.3147880/94‑1 (MQ=60)

                                                                TTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTC                               <  SRR4302533.3347522/94‑1 (MQ=60)

                                                                TTATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTC                               <  SRR4302533.5008689/94‑1 (MQ=60)

                                                                 TATGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCG                              >  SRR4302533.185491/1‑94 (MQ=60)

                                                                   TGATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCC                            <  SRR4302533.5580551/94‑1 (MQ=60)

                                                                    GATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCA                           <  SRR4302533.3662711/94‑1 (MQ=60)

                                                                     ATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAC                          >  SRR4302533.2376966/1‑94 (MQ=60)

                                                                     ATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAC                          <  SRR4302533.492082/94‑1 (MQ=60)

                                                                     ATCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAC                          <  SRR4302533.4204072/94‑1 (MQ=60)

                                                                     ACCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCAC                          <  SRR4302533.923739/94‑1 (MQ=60)

                                                                      TCTTCCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACA                         <  SRR4302533.1708184/94‑1 (MQ=60)

                                                                       CTTCCCGCACTGGAACGTTTGACGCGTGGCCTGAACGGTGGCGAAACTCAAATATCCGATGTAATGACCACTACGCCCTCGCCTTTCGCCACAA                        >  SRR4302533.4140339/1‑94 (MQ=60)

                                                                          CCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTT                     >  SRR4302533.5256567/1‑94 (MQ=60)

                                                                          CCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTT                     <  SRR4302533.4150656/94‑1 (MQ=60)

                                                                          CCCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTT                     >  SRR4302533.4964136/1‑94 (MQ=60)

                                                                           CCGCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTA                    >  SRR4302533.6210628/1‑94 (MQ=60)

                                                                             GCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAT                  <  SRR4302533.4182870/94‑1 (MQ=60)

                                                                             GCACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTAT                  >  SRR4302533.242965/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                 <  SRR4302533.89244/94‑1 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                 >  SRR4302533.4203103/1‑94 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                 <  SRR4302533.1959141/94‑1 (MQ=60)

                                                                              CACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATT                 <  SRR4302533.206909/94‑1 (MQ=60)

                                                                               ACTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTG                <  SRR4302533.2245665/94‑1 (MQ=60)

                                                                                CTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGT               >  SRR4302533.5656455/1‑94 (MQ=60)

                                                                                CTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGT               <  SRR4302533.4534699/94‑1 (MQ=60)

                                                                                CTGGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGT               <  SRR4302533.2802473/94‑1 (MQ=60)

                                                                                  GGAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTC             >  SRR4302533.266933/1‑94 (MQ=60)

                                                                                   GAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCG            >  SRR4302533.5491335/1‑94 (MQ=60)

                                                                                   GAACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCG            <  SRR4302533.3056005/94‑1 (MQ=60)

                                                                                     ACGTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGC          >  SRR4302533.2963395/1‑94 (MQ=60)

                                                                                       GTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTA        >  SRR4302533.2854/1‑94 (MQ=60)

                                                                                       GTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTA        >  SRR4302533.73144/1‑94 (MQ=60)

                                                                                       GTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTA        >  SRR4302533.732730/1‑94 (MQ=60)

                                                                                       GTTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTA        >  SRR4302533.1568105/1‑94 (MQ=60)

                                                                                        TTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTAT       <  SRR4302533.152057/94‑1 (MQ=60)

                                                                                        TTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTAT       <  SRR4302533.4715877/94‑1 (MQ=60)

                                                                                        TTTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTAT       <  SRR4302533.1500984/94‑1 (MQ=60)

                                                                                         TTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG      <  SRR4302533.2016386/94‑1 (MQ=60)

                                                                                         TTGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATG      <  SRR4302533.3887698/94‑1 (MQ=60)

                                                                                          TGACGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGT     <  SRR4302533.4649883/94‑1 (MQ=60)

                                                                                             CGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCGC  >  SRR4302533.1837319/1‑94 (MQ=60)

TCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTCGCCTGAACGGTGGCGAAATTCAAATATCCGATGTAACGACCACTACGCCCTCGCCTTTCGCCACAAGTTTATTGTTCGGCTATGTCGC  >  NC_000913/1729551‑1729737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`