Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,759,194	C→T	A208T (GCA→ACA)	ynhC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,759,194	0	C	T	100.0%	858.7 / NA	231	A208T (GCA→ACA)	ynhC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (110/121); total (110/121)

Only 100 of 235 total aligned reads displayed.

CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG  >  NC_000913/1759104‑1759283

   cagccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGt                                                                                      <  2:6201173/93‑1 (MQ=255)

   cagccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGt                                                                                      <  1:2489058/93‑1 (MQ=255)

    agccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGtt                                                                                     >  2:6030530/1‑93 (MQ=255)

     gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg                                                                                    <  2:507332/93‑1 (MQ=255)

     gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg                                                                                    >  1:5572106/1‑93 (MQ=255)

     gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg                                                                                    <  1:3406246/93‑1 (MQ=255)

      ccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa                                                                                   <  2:5414322/93‑1 (MQ=255)

       cagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAt                                                                                  <  2:1847784/93‑1 (MQ=255)

       cagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAt                                                                                  >  2:2225985/1‑93 (MQ=255)

        agcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCAAGCGTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATa                                                                                 <  1:3089619/93‑1 (MQ=255)

         gcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAg                                                                                >  1:40323/1‑93 (MQ=255)

         gcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAg                                                                                >  2:5818183/1‑93 (MQ=255)

          caacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGt                                                                               <  1:5553056/93‑1 (MQ=255)

          caacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGt                                                                               <  1:2665370/93‑1 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             <  1:4879665/93‑1 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             >  1:5841681/1‑93 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             >  2:2640446/1‑93 (MQ=255)

              aaaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAc                                                                           >  1:1781962/1‑93 (MQ=255)

              aaaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAATGAAc                                                                           <  2:4826826/93‑1 (MQ=255)

               aaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAcc                                                                          >  1:3550328/1‑93 (MQ=255)

                aTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCg                                                                         <  2:5538130/93‑1 (MQ=255)

                   gTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGc                                                                      >  2:4893730/1‑93 (MQ=255)

                   gTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGc                                                                      >  1:4349364/1‑93 (MQ=255)

                    ttATGCGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAAGTTGATAGTGAACCGTGcc                                                                     >  1:565044/1‑93 (MQ=255)

                    ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc                                                                     <  2:2279783/93‑1 (MQ=255)

                    ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc                                                                     >  1:602282/1‑93 (MQ=255)

                    ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc                                                                     <  2:1548053/93‑1 (MQ=255)

                    ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc                                                                     >  2:3375021/1‑93 (MQ=255)

                     tATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGccc                                                                    >  2:413727/1‑93 (MQ=255)

                     tATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGccc                                                                    <  2:1451228/93‑1 (MQ=255)

                      aTGCGCAGAGTGCTGACTGCCCGGGTTTTCAAACGCCACCTTGATATGCTGCAAGTGGGCATTCGCTGTGACTTTGATAGTGAACCGTGcccc                                                                   <  2:2746232/93‑1 (MQ=255)

                      aTGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcccc                                                                   >  2:5751648/1‑93 (MQ=255)

                        gAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCgg                                                                 <  1:704725/93‑1 (MQ=255)

                          gCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTa                                                               >  2:4700391/1‑93 (MQ=255)

                            aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa                                                             <  2:1718959/93‑1 (MQ=255)

                            aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa                                                             >  1:1678632/1‑93 (MQ=255)

                            aaaGTGGTGACTGAGCGGGGTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa                                                             >  2:3505539/1‑93 (MQ=255)

                             aaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaaa                                                            <  1:2510731/93‑1 (MQ=255)

                              aGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAt                                                           <  1:15547/93‑1 (MQ=255)

                               gtggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATg                                                          >  2:4609905/1‑93 (MQ=255)

                                tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGa                                                         <  2:5351222/93‑1 (MQ=255)

                                 ggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAc                                                        >  1:3742069/1‑93 (MQ=255)

                                   tgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGa                                                      <  2:2120140/93‑1 (MQ=255)

                                   tgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGa                                                      <  1:6249396/93‑1 (MQ=255)

                                    gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg                                                     <  2:3908828/93‑1 (MQ=255)

                                    gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg                                                     >  2:1369727/1‑93 (MQ=255)

                                     aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGc                                                    >  1:2296031/1‑93 (MQ=255)

                                     aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGc                                                    <  2:3457500/93‑1 (MQ=255)

                                     aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGc                                                    >  1:5170008/1‑93 (MQ=255)

                                       tGAGCGGGTTTTCAAACGCCGGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcat                                                  <  2:1927015/93‑1 (MQ=255)

                                         aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca                                                >  1:4562967/1‑93 (MQ=255)

                                          gCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatcat                                               <  1:5380974/93‑1 (MQ=255)

                                           cGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAtt                                              <  2:2955878/93‑1 (MQ=255)

                                            gggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTc                                             <  2:660957/93‑1 (MQ=255)

                                            gggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTc                                             >  1:3200223/1‑93 (MQ=255)

                                             ggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCa                                            <  1:4962438/93‑1 (MQ=255)

                                                tttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGc                                         <  1:6116149/93‑1 (MQ=255)

                                                tttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGc                                         <  1:3019593/93‑1 (MQ=255)

                                                 ttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCt                                        >  1:1863747/1‑93 (MQ=255)

                                                  tCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTg                                       <  1:992836/93‑1 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      <  1:847026/93‑1 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      <  1:1313094/93‑1 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      >  1:1698248/1‑93 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGCAAAATGACGAGCATCATTCAGGCTGa                                      >  1:6146233/1‑93 (MQ=255)

                                                    aaaCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAc                                     <  2:5151353/93‑1 (MQ=255)

                                                        gCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaaa                                 >  1:3936486/1‑93 (MQ=255)

                                                        gCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaaa                                 <  2:5368544/93‑1 (MQ=255)

                                                         ccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAt                                >  1:4409437/1‑93 (MQ=255)

                                                         ccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAt                                >  1:1627949/1‑93 (MQ=255)

                                                         ccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTAAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAt                                <  2:2154100/93‑1 (MQ=255)

                                                          cAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATg                               >  2:3232688/1‑93 (MQ=255)

                                                          cAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATg                               <  1:1092149/93‑1 (MQ=255)

                                                            gCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGtt                             >  2:1343608/1‑93 (MQ=255)

                                                              ttGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCg                           >  1:1040982/1‑93 (MQ=255)

                                                              ttGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCg                           <  2:4797871/93‑1 (MQ=255)

                                                                gATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGAt                         <  2:5658571/93‑1 (MQ=255)

                                                                 atatGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATc                        <  2:3042035/93‑1 (MQ=255)

                                                                 atatGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATc                        <  1:3852686/93‑1 (MQ=255)

                                                                 atatGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATc                        <  2:160793/93‑1 (MQ=255)

                                                                   atGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAc                      >  2:3799756/1‑93 (MQ=255)

                                                                    tgctgtAAGTGGTCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAACATCATTCAGGCTGACAAAATGTTCGATCGcc                     <  2:2541440/93‑1 (MQ=255)

                                                                    tgctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAcc                     <  2:1295292/93‑1 (MQ=255)

                                                                    tgctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAcc                     >  2:109716/1‑93 (MQ=255)

                                                                       tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt                  >  2:3178058/1‑93 (MQ=255)

                                                                       tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt                  >  1:2021766/1‑93 (MQ=255)

                                                                       tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt                  <  1:4257855/93‑1 (MQ=255)

                                                                         cAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGc                <  2:5090725/93‑1 (MQ=255)

                                                                          aaGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCt               >  1:2752125/1‑93 (MQ=255)

                                                                           aGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCtt              >  2:2456566/1‑93 (MQ=255)

                                                                            gTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTc             >  1:322060/1‑93 (MQ=255)

                                                                            gTGGGCATGCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTc             <  1:5331118/93‑1 (MQ=255)

                                                                             tGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg            >  1:4638658/1‑93 (MQ=255)

                                                                             tGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg            >  2:2016421/1‑93 (MQ=255)

                                                                              gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg           <  2:1176966/93‑1 (MQ=255)

                                                                              gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg           >  1:1488457/1‑93 (MQ=255)

                                                                               ggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGc          >  2:2697306/1‑93 (MQ=255)

                                                                                   ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt      <  1:4923918/93‑1 (MQ=255)

                                                                                   ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt      >  2:2309966/1‑93 (MQ=255)

                                                                                     cGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTc    >  2:589857/1‑93 (MQ=255)

                                                                                      gCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTcc   <  1:3665838/93‑1 (MQ=255)

CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG  >  NC_000913/1759104‑1759283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  NC_000913/1759101‑1759287

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT                                                                                               >  SRR4302533.2658963/1‑94 (MQ=60)

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT                                                                                               <  SRR4302533.3291799/94‑1 (MQ=60)

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGT                                                                                               >  SRR4302533.3398676/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302533.2955684/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302533.5069491/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302533.4006330/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302533.3237365/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302533.5896002/1‑94 (MQ=60)

    CTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACG                                                                                           >  SRR4302533.2697292/1‑94 (MQ=60)

    CTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACG                                                                                           <  SRR4302533.704790/94‑1 (MQ=60)

      CAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTT                                                                                         <  SRR4302533.2504387/94‑1 (MQ=60)

       AGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTG                                                                                        >  SRR4302533.5605782/1‑94 (MQ=60)

       AGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTG                                                                                        >  SRR4302533.5683502/1‑94 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGA                                                                                       <  SRR4302533.3427284/94‑1 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGGGGGCATTCGCTGTGACGTTGA                                                                                       >  SRR4302533.4054747/1‑94 (MQ=60)

           AGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAG                                                                                    >  SRR4302533.40596/1‑94 (MQ=60)

           AGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCAAGCGTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAG                                                                                    <  SRR4302533.3108612/94‑1 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  <  SRR4302533.5586590/94‑1 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302533.630260/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  <  SRR4302533.271563/94‑1 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302533.1450521/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  <  SRR4302533.2681726/94‑1 (MQ=60)

              AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA                                                                                 >  SRR4302533.5876999/1‑94 (MQ=60)

               ACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAA                                                                                <  SRR4302533.4909230/94‑1 (MQ=60)

               ACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAA                                                                                <  SRR4302533.4958080/94‑1 (MQ=60)

                CAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAC                                                                               >  SRR4302533.1792803/1‑94 (MQ=60)

                CAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAC                                                                               <  SRR4302533.5591117/94‑1 (MQ=60)

                CAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAC                                                                               >  SRR4302533.4030339/1‑94 (MQ=60)

                 AAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACC                                                                              >  SRR4302533.3572201/1‑94 (MQ=60)

                  AATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCG                                                                             >  SRR4302533.5802629/1‑94 (MQ=60)

                     CGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGC                                                                          >  SRR4302533.4375586/1‑94 (MQ=60)

                      GTTATGCGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAAGTTGATAGTGAACCGTGCC                                                                         >  SRR4302533.568393/1‑94 (MQ=60)

                      GTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCC                                                                         >  SRR4302533.605822/1‑94 (MQ=60)

                      GTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCC                                                                         >  SRR4302533.3458891/1‑94 (MQ=60)

                          TGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGG                                                                     <  SRR4302533.4503914/94‑1 (MQ=60)

                           GAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGT                                                                    <  SRR4302533.3768018/94‑1 (MQ=60)

                           GAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGT                                                                    <  SRR4302533.708888/94‑1 (MQ=60)

                            AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA                                                                   >  SRR4302533.5623938/1‑94 (MQ=60)

                              CAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAA                                                                 >  SRR4302533.156887/1‑94 (MQ=60)

                              CAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAA                                                                 >  SRR4302533.1688800/1‑94 (MQ=60)

                              CAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGCGCCCCGGTAAA                                                                 >  SRR4302533.1688801/1‑94 (MQ=60)

                               AAAGTGGTGACTGAGCGGGTTTTCAAACGCGAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAA                                                                <  SRR4302533.1543305/94‑1 (MQ=60)

                               AAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAA                                                                >  SRR4302533.2536754/1‑94 (MQ=60)

                                AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302533.4350549/94‑1 (MQ=60)

                                AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302533.2526203/94‑1 (MQ=60)

                                 AGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATG                                                              <  SRR4302533.15657/94‑1 (MQ=60)

                                   TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC                                                            >  SRR4302533.3765018/1‑94 (MQ=60)

                                   TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC                                                            <  SRR4302533.1112614/94‑1 (MQ=60)

                                   TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC                                                            <  SRR4302533.1805569/94‑1 (MQ=60)

                                     GTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGA                                                          <  SRR4302533.3698522/94‑1 (MQ=60)

                                      TGAGTGAGCGGGTGTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAG                                                         <  SRR4302533.1675343/94‑1 (MQ=60)

                                      TGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAG                                                         <  SRR4302533.6286786/94‑1 (MQ=60)

                                      TGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAG                                                         >  SRR4302533.173270/1‑94 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        >  SRR4302533.5201211/1‑94 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        >  SRR4302533.2310250/1‑94 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        >  SRR4302533.6281573/1‑94 (MQ=60)

                                        ACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCA                                                       <  SRR4302533.4388215/94‑1 (MQ=60)

                                           GAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCA                                                    <  SRR4302533.5409626/94‑1 (MQ=60)

                                           GAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCA                                                    >  SRR4302533.4590636/1‑94 (MQ=60)

                                            AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT                                                   <  SRR4302533.5028986/94‑1 (MQ=60)

                                             GCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATT                                                  <  SRR4302533.5413303/94‑1 (MQ=60)

                                             GCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATT                                                  >  SRR4302533.2208412/1‑94 (MQ=60)

                                              CGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTC                                                 >  SRR4302533.4928711/1‑94 (MQ=60)

                                              CGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTC                                                 >  SRR4302533.3219915/1‑94 (MQ=60)

                                               GGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                >  SRR4302533.4195817/1‑94 (MQ=60)

                                                GGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAG                                               <  SRR4302533.4992526/94‑1 (MQ=60)

                                                GGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAG                                               <  SRR4302533.6083774/94‑1 (MQ=60)

                                                 GTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGG                                              >  SRR4302533.1839405/1‑94 (MQ=60)

                                                  TTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGC                                             >  SRR4302533.282972/1‑94 (MQ=60)

                                                   TTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCT                                            >  SRR4302533.1875116/1‑94 (MQ=60)

                                                   TTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCT                                            <  SRR4302533.6153047/94‑1 (MQ=60)

                                                   TTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCT                                            <  SRR4302533.3038079/94‑1 (MQ=60)

                                                    TTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTG                                           >  SRR4302533.1683276/1‑94 (MQ=60)

                                                     TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGA                                          >  SRR4302533.1708538/1‑94 (MQ=60)

                                                     TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGA                                          <  SRR4302533.998639/94‑1 (MQ=60)

                                                     TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGA                                          <  SRR4302533.3243469/94‑1 (MQ=60)

                                                     TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGCAAAATGACGAGCATCATTCAGGCTGA                                          >  SRR4302533.6183237/1‑94 (MQ=60)

                                                      CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC                                         <  SRR4302533.851984/94‑1 (MQ=60)

                                                      CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC                                         <  SRR4302533.1320974/94‑1 (MQ=60)

                                                       AAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACA                                        >  SRR4302533.6173042/1‑94 (MQ=60)

                                                       AAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACA                                        <  SRR4302533.5572284/94‑1 (MQ=60)

                                                        AACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAA                                       >  SRR4302533.3900776/1‑94 (MQ=60)

                                                         ACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAA                                      <  SRR4302533.4664342/94‑1 (MQ=60)

                                                         ACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAA                                      >  SRR4302533.3189009/1‑94 (MQ=60)

                                                          CGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAA                                     >  SRR4302533.3960516/1‑94 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    >  SRR4302533.4436064/1‑94 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    >  SRR4302533.1637808/1‑94 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    >  SRR4302533.5933485/1‑94 (MQ=60)

                                                            CCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATG                                   >  SRR4302533.2510975/1‑94 (MQ=60)

                                                            CCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATG                                   <  SRR4302533.4783474/94‑1 (MQ=60)

                                                            CCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATG                                   >  SRR4302533.3211610/1‑94 (MQ=60)

                                                             CAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGT                                  <  SRR4302533.6067122/94‑1 (MQ=60)

                                                             CAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGT                                  <  SRR4302533.1098609/94‑1 (MQ=60)

                                                              AGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTT                                 >  SRR4302533.5135279/1‑94 (MQ=60)

                                                               GCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTC                                >  SRR4302533.1084590/1‑94 (MQ=60)

                                                                CTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCG                               >  SRR4302533.1047102/1‑94 (MQ=60)

                                                                ATTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCG                               <  SRR4302533.4810142/94‑1 (MQ=60)

                                                                 TTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGA                              <  SRR4302533.2425874/94‑1 (MQ=60)

                                                                   TATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATC                            <  SRR4302533.4381612/94‑1 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           <  SRR4302533.3225965/94‑1 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           <  SRR4302533.3876215/94‑1 (MQ=60)

                                                                     TATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAC                          <  SRR4302533.2026431/94‑1 (MQ=60)

                                                                        GCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGT                       <  SRR4302533.5295298/94‑1 (MQ=60)

                                                                         CTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTT                      >  SRR4302533.2034217/1‑94 (MQ=60)

                                                                          TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG                     <  SRR4302533.4283522/94‑1 (MQ=60)

                                                                          TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG                     >  SRR4302533.2333437/1‑94 (MQ=60)

                                                                            CAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT                   >  SRR4302533.2769001/1‑94 (MQ=60)

                                                                            CAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT                   <  SRR4302533.3097415/94‑1 (MQ=60)

                                                                              AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC                 >  SRR4302533.324028/1‑94 (MQ=60)

                                                                              AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC                 <  SRR4302533.5477046/94‑1 (MQ=60)

                                                                               GTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCG                >  SRR4302533.4666767/1‑94 (MQ=60)

                                                                               GTGGGCATGCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCG                <  SRR4302533.5363073/94‑1 (MQ=60)

                                                                                TGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGG               >  SRR4302533.1497435/1‑94 (MQ=60)

                                                                                    CATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACC           >  SRR4302533.3706309/1‑94 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT          >  SRR4302533.3686042/1‑94 (MQ=60)

                                                                                      TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT         >  SRR4302533.903052/1‑94 (MQ=60)

                                                                                      TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT         >  SRR4302533.807816/1‑94 (MQ=60)

                                                                                      TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT         <  SRR4302533.4953747/94‑1 (MQ=60)

                                                                                         GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG      >  SRR4302533.3337864/1‑94 (MQ=60)

                                                                                         GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG      <  SRR4302533.3688372/94‑1 (MQ=60)

                                                                                         GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG      >  SRR4302533.140113/1‑94 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     >  SRR4302533.521287/1‑94 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     >  SRR4302533.6229163/1‑94 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     >  SRR4302533.2713365/1‑94 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     >  SRR4302533.4612502/1‑94 (MQ=60)

                                                                                           TGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCC    >  SRR4302533.3916259/1‑94 (MQ=60)

                                                                                             TGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  SRR4302533.1361320/1‑94 (MQ=60)

                                                                                             TGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  SRR4302533.3050954/1‑94 (MQ=60)

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  NC_000913/1759101‑1759287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`