Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,759,194	C→T	A208T (GCA→ACA)	ynhC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,759,194	0	C	T	98.7%	828.6 / ‑2.8	234	A208T (GCA→ACA)	ynhC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (107/123); total (108/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.24e-01

Only 100 of 239 total aligned reads displayed.

CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG  >  NC_000913/1759104‑1759283

ccTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGa                                                                                         <  1:6193075/93‑1 (MQ=255)

 cTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAc                                                                                        <  1:5206200/93‑1 (MQ=255)

 cTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAc                                                                                        <  2:6194870/93‑1 (MQ=255)

   cagccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGt                                                                                      <  1:3749312/93‑1 (MQ=255)

     gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg                                                                                    <  2:11480/93‑1 (MQ=255)

     gccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTg                                                                                    <  2:2295937/93‑1 (MQ=255)

      ccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa                                                                                   >  2:8730923/1‑93 (MQ=255)

      ccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa                                                                                   >  1:2272108/1‑93 (MQ=255)

      ccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa                                                                                   >  1:3225050/1‑93 (MQ=255)

      ccagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGa                                                                                   >  1:3387746/1‑93 (MQ=255)

       cagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAt                                                                                  <  2:6654142/93‑1 (MQ=255)

       cagcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAt                                                                                  >  1:485662/1‑93 (MQ=255)

        agcAACAAATCGTTATGAGCAAAGTGGTGACTGGGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATa                                                                                 >  2:4860072/1‑93 (MQ=255)

        agcAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATa                                                                                 <  2:6681873/93‑1 (MQ=255)

           aacaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTg                                                                              >  1:4605362/1‑93 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             >  2:4345725/1‑93 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             >  2:529983/1‑93 (MQ=255)

            acaaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGa                                                                             >  1:5144399/1‑93 (MQ=255)

             caaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGaa                                                                            >  2:3618282/1‑93 (MQ=255)

             caaATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGaa                                                                            <  1:9765936/93‑1 (MQ=255)

               aaTCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAcc                                                                          >  1:5842247/1‑93 (MQ=255)

                 gcggtATGAGAAAAGTGGTGGATGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGt                                                                        <  1:10013970/89‑1 (MQ=255)

                   gTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGc                                                                      >  1:7424208/1‑93 (MQ=255)

                    ttATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGcc                                                                     <  2:4203503/93‑1 (MQ=255)

                        gAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCgg                                                                 <  1:2972325/93‑1 (MQ=255)

                        gAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCgg                                                                 >  1:5452534/1‑93 (MQ=255)

                        gAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCgg                                                                 >  2:8389328/1‑93 (MQ=255)

                           cAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaa                                                              >  1:714952/1‑93 (MQ=255)

                            aaaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaa                                                             <  2:9520735/93‑1 (MQ=255)

                             aaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaaa                                                            <  2:7250012/93‑1 (MQ=255)

                             aaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaaa                                                            <  1:7615313/93‑1 (MQ=255)

                             aaGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTaaaa                                                            <  1:6462797/93‑1 (MQ=255)

                               gtggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATg                                                          <  2:6524753/93‑1 (MQ=255)

                                tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAGCCGTGCCCCGGTAAAATGa                                                         <  2:944427/93‑1 (MQ=255)

                                tggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGa                                                         >  1:4998081/1‑93 (MQ=255)

                                 ggtgACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAc                                                        >  1:6903033/1‑93 (MQ=255)

                                    gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg                                                     <  1:4196588/93‑1 (MQ=255)

                                    gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg                                                     <  1:4583268/93‑1 (MQ=255)

                                    gACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAg                                                     <  2:5108654/93‑1 (MQ=255)

                                     aCTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTCAAATGACGAGc                                                    >  2:4644257/1‑93 (MQ=255)

                                        gAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatc                                                 <  1:1157180/93‑1 (MQ=255)

                                         aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca                                                >  2:7493101/1‑93 (MQ=255)

                                         aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca                                                <  1:610539/93‑1 (MQ=255)

                                         aGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGcatca                                                >  1:9850946/1‑93 (MQ=255)

                                            gggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTc                                             <  2:2398740/93‑1 (MQ=255)

                                            gggTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTc                                             <  2:2912026/93‑1 (MQ=255)

                                              gTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAg                                           <  2:4411091/93‑1 (MQ=255)

                                               ttttCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAgg                                          >  2:3986856/1‑93 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGACCCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      <  1:4146425/93‑1 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      <  2:7890352/93‑1 (MQ=255)

                                                   cAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGa                                      <  1:4418145/93‑1 (MQ=255)

                                                    aaaCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAc                                     <  2:5714934/93‑1 (MQ=255)

                                                     aaCGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACa                                    >  1:9632085/1‑93 (MQ=255)

                                                       cGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaa                                  <  1:3668336/93‑1 (MQ=255)

                                                        gCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaaa                                 <  1:2076947/93‑1 (MQ=255)

                                                        cccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACaaaa                                 <  2:8581833/92‑1 (MQ=255)

                                                         ccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAt                                >  1:2566836/1‑93 (MQ=255)

                                                         ccAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAt                                <  2:2683192/93‑1 (MQ=255)

                                                          cAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATg                               >  1:9494255/1‑93 (MQ=255)

                                                          cAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATg                               <  2:4889643/93‑1 (MQ=255)

                                                           aGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGt                              >  1:8261725/1‑93 (MQ=255)

                                                            gCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGtt                             <  2:3873678/93‑1 (MQ=255)

                                                             cTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTc                            <  2:1246519/93‑1 (MQ=255)

                                                             cTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTc                            >  1:3538984/1‑93 (MQ=255)

                                                               tGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGa                          <  1:1763779/93‑1 (MQ=255)

                                                               tGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGa                          <  2:8841998/93‑1 (MQ=255)

                                                                  tatGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCa                       >  2:4742025/1‑93 (MQ=255)

                                                                   atGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAc                      <  2:3224060/93‑1 (MQ=255)

                                                                    tgctgcAAGTTGGCATTCTCTGCGACGTTGATAGTTAACCGTGCCCCGGTAAAATGACTGGGATCATTCCTGCTGTCAAAATGTTCTATCaac                     >  2:9218368/1‑91 (MQ=255)

                                                                    tgctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAcc                     <  1:6263285/93‑1 (MQ=255)

                                                                    tgctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAcc                     <  1:3674507/93‑1 (MQ=255)

                                                                     gctgcAAGTGGGCATTCGCTGTGACGTTGATAGTGATCCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCg                    <  1:1649014/93‑1 (MQ=255)

                                                                       tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt                  >  2:6070244/1‑93 (MQ=255)

                                                                       tgcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGtt                  <  2:7839643/93‑1 (MQ=255)

                                                                        gcAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTg                 >  1:8042023/1‑93 (MQ=255)

                                                                         cAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGc                >  1:772056/1‑93 (MQ=255)

                                                                         cAAGTGGGCATTCGCTGGGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGc                <  1:8694598/93‑1 (MQ=255)

                                                                          aaGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCt               >  1:9139261/1‑93 (MQ=255)

                                                                          aaGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGAACCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCAACATTggt               >  2:1373635/1‑91 (MQ=255)

                                                                           aGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCtt              >  2:5935930/1‑93 (MQ=255)

                                                                           aGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCtt              >  2:396745/1‑93 (MQ=255)

                                                                            gTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTc             >  1:1114244/1‑93 (MQ=255)

                                                                            gTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTc             >  1:4753304/1‑93 (MQ=255)

                                                                             tGGGCATTCGCTGTGACGTTGATCGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg            <  2:5531640/93‑1 (MQ=255)

                                                                             tGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg            >  1:6142116/1‑93 (MQ=255)

                                                                             tGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCg            <  2:1962019/93‑1 (MQ=255)

                                                                              gggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCgg           >  2:8481806/1‑93 (MQ=255)

                                                                               ggCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGc          <  2:10039803/93‑1 (MQ=255)

                                                                                gCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCa         <  2:7405194/93‑1 (MQ=255)

                                                                                gCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCa         <  1:266377/93‑1 (MQ=255)

                                                                                 cATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCAc        <  2:1091074/93‑1 (MQ=255)

                                                                                 cATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCAc        <  1:7938520/93‑1 (MQ=255)

                                                                                   ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt      >  1:9378416/1‑93 (MQ=255)

                                                                                   ttCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCt      >  2:8935342/1‑93 (MQ=255)

                                                                                     cGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTc    <  1:3772523/93‑1 (MQ=255)

                                                                                     cGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTc    <  1:8400244/93‑1 (MQ=255)

                                                                                     cGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTc    <  2:5384865/93‑1 (MQ=255)

                                                                                       cTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCg  <  1:4043618/93‑1 (MQ=255)

                                                                                       cTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCg  >  2:8686895/1‑93 (MQ=255)

                                                                                       cTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCg  >  1:1835914/1‑93 (MQ=255)

CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG  >  NC_000913/1759104‑1759283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  NC_000913/1759101‑1759287

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGG                                                                                               >  SRR4302540.7623337/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              <  SRR4302540.1820658/94‑1 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302540.2572917/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              <  SRR4302540.7271741/94‑1 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302540.503680/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302540.7543048/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302540.5024832/1‑94 (MQ=60)

 ATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTG                                                                                              >  SRR4302540.5778086/1‑94 (MQ=60)

   CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAC                                                                                            <  SRR4302540.6262031/94‑1 (MQ=60)

   CCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGAC                                                                                            <  SRR4302540.6262033/94‑1 (MQ=60)

    CTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACG                                                                                           <  SRR4302540.5262910/94‑1 (MQ=60)

      CAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTT                                                                                         <  SRR4302540.3790218/94‑1 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGA                                                                                       >  SRR4302540.3260108/1‑94 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGA                                                                                       <  SRR4302540.7628922/94‑1 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGA                                                                                       >  SRR4302540.3424713/1‑94 (MQ=60)

        GCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGA                                                                                       >  SRR4302540.2296493/1‑94 (MQ=60)

         CCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGAT                                                                                      >  SRR4302540.490859/1‑94 (MQ=60)

            GCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGT                                                                                   >  SRR4302540.4139726/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  <  SRR4302540.808426/94‑1 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302540.4654829/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302540.4654828/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302540.3513352/1‑94 (MQ=60)

             CAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGGTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTG                                                                                  >  SRR4302540.5727487/1‑94 (MQ=60)

              AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA                                                                                 >  SRR4302540.5200116/1‑94 (MQ=60)

              AACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGA                                                                                 <  SRR4302540.2087283/94‑1 (MQ=60)

               ACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAA                                                                                >  SRR4302540.4670991/1‑94 (MQ=60)

                CAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAAC                                                                               <  SRR4302540.9880462/94‑1 (MQ=60)

                 AAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACC                                                                              <  SRR4302540.2114453/94‑1 (MQ=60)

                 AAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACC                                                                              >  SRR4302540.5906853/1‑94 (MQ=60)

                   ATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGT                                                                            >  SRR4302540.2533138/1‑94 (MQ=60)

                    gcggTATGAGAAAAGTGGTGGATGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTG                                                                           <  SRR4302540.10130554/90‑1 (MQ=60)

                    TCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTG                                                                           >  SRR4302540.9451343/1‑94 (MQ=60)

                     CGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGC                                                                          >  SRR4302540.7506909/1‑94 (MQ=60)

                          TGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGG                                                                     >  SRR4302540.5512542/1‑94 (MQ=60)

                          TGAGCAAAGTGGTGACTGAGCGGATTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGG                                                                     <  SRR4302540.4706163/94‑1 (MQ=60)

                           GAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGT                                                                    <  SRR4302540.3005166/94‑1 (MQ=60)

                            AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA                                                                   >  SRR4302540.5015096/1‑94 (MQ=60)

                            AGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTA                                                                   <  SRR4302540.7659643/94‑1 (MQ=60)

                             GCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAA                                                                  >  SRR4302540.722628/1‑94 (MQ=60)

                               AAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAA                                                                <  SRR4302540.1704796/94‑1 (MQ=60)

                               AAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAA                                                                >  SRR4302540.8308905/1‑94 (MQ=60)

                                AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302540.6044219/94‑1 (MQ=60)

                                AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302540.6534722/94‑1 (MQ=60)

                                AAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302540.7700925/94‑1 (MQ=60)

                                AAGTCGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGTCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAAT                                                               <  SRR4302540.6695846/94‑1 (MQ=60)

                                 AGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATG                                                              <  SRR4302540.9942317/94‑1 (MQ=60)

                                  GTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGA                                                             >  SRR4302540.5052197/1‑94 (MQ=60)

                                   TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC                                                            >  SRR4302540.6979773/1‑94 (MQ=60)

                                   TGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGAC                                                            <  SRR4302540.4563226/94‑1 (MQ=60)

                                      TGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAG                                                         >  SRR4302540.359850/1‑94 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        <  SRR4302540.6450681/94‑1 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        <  SRR4302540.4242237/94‑1 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        <  SRR4302540.4632662/94‑1 (MQ=60)

                                       GACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGC                                                        <  SRR4302540.2443588/94‑1 (MQ=60)

                                         CTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCAT                                                      <  SRR4302540.4386448/94‑1 (MQ=60)

                                          TGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATC                                                     >  SRR4302540.3135287/1‑94 (MQ=60)

                                           GAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCA                                                    >  SRR4302540.9966086/1‑94 (MQ=60)

                                           GAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCA                                                    <  SRR4302540.1169218/94‑1 (MQ=60)

                                            AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT                                                   <  SRR4302540.617064/94‑1 (MQ=60)

                                            AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT                                                   >  SRR4302540.8411640/1‑94 (MQ=60)

                                            AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT                                                   <  SRR4302540.617063/94‑1 (MQ=60)

                                            AGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCAT                                                   >  SRR4302540.5941865/1‑94 (MQ=60)

                                              CGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTC                                                 <  SRR4302540.5034102/94‑1 (MQ=60)

                                               cgagTTTCAAACCCCAGCTTGATATGCTGCAATTCGGTTTTCGCTGTGACGTTGTTAGTCACCCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                <  SRR4302540.3739798/90‑1 (MQ=46)

                                               GTGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                <  SRR4302540.282540/94‑1 (MQ=60)

                                               GGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                <  SRR4302540.3739797/94‑1 (MQ=60)

                                               GGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                >  SRR4302540.3950074/1‑94 (MQ=60)

                                               GGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCA                                                >  SRR4302540.1877027/1‑94 (MQ=60)

                                                 GTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGC                                              >  SRR4302540.1849121/1‑94 (MQ=60)

                                                   TTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCT                                            >  SRR4302540.3708795/1‑94 (MQ=60)

                                                    TTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTG                                           >  SRR4302540.7837463/1‑94 (MQ=60)

                                                    TTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTG                                           >  SRR4302540.5441722/1‑94 (MQ=60)

                                                     TCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGA                                          <  SRR4302540.8432016/94‑1 (MQ=60)

                                                      CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGACCCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC                                         <  SRR4302540.4191300/94‑1 (MQ=60)

                                                      CAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGAC                                         <  SRR4302540.4466018/94‑1 (MQ=60)

                                                       AAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACA                                        >  SRR4302540.9745581/1‑94 (MQ=60)

                                                       AAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACA                                        >  SRR4302540.4812978/1‑94 (MQ=60)

                                                       AAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACA                                        >  SRR4302540.9745582/1‑94 (MQ=60)

                                                        AACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAA                                       >  SRR4302540.4352591/1‑94 (MQ=60)

                                                          CGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAA                                     >  SRR4302540.3809173/1‑94 (MQ=60)

                                                          CGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAA                                     <  SRR4302540.3708464/94‑1 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGCCAAAAG                                    >  SRR4302540.2594509/1‑94 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    <  SRR4302540.9289222/94‑1 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    <  SRR4302540.2099266/94‑1 (MQ=60)

                                                           GCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAAT                                    >  SRR4302540.2594508/1‑94 (MQ=60)

                                                            CCAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATG                                   >  SRR4302540.9606784/1‑94 (MQ=60)

                                                             CAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGggaacagggaccgggagaaatgacgagcatcatcagggctgaccaaacgt                                  >  SRR4302540.2485549/1‑44 (MQ=60)

                                                             CAGCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGT                                  >  SRR4302540.8357729/1‑94 (MQ=60)

                                                               GCTTGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTC                                >  SRR4302540.3577629/1‑94 (MQ=60)

                                                               GCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTC                                <  SRR4302540.6736485/94‑1 (MQ=60)

                                                                  TGATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGAT                             <  SRR4302540.1782911/94‑1 (MQ=60)

                                                                   GATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATC                            >  SRR4302540.7456491/1‑94 (MQ=60)

                                                                   GATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATC                            <  SRR4302540.3909664/94‑1 (MQ=60)

                                                                    atattcttgAAGTGGGCATTCGGTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           <  SRR4302540.8027826/85‑1 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           <  SRR4302540.8869994/94‑1 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           >  SRR4302540.3736260/1‑94 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           <  SRR4302540.524526/94‑1 (MQ=60)

                                                                    ATATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCA                           >  SRR4302540.1535688/1‑94 (MQ=60)

                                                                      ATGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACC                         >  SRR4302540.3078893/1‑94 (MQ=60)

                                                                       TGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCG                        <  SRR4302540.6332966/94‑1 (MQ=60)

                                                                       TGCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCG                        <  SRR4302540.3714685/94‑1 (MQ=60)

                                                                        GCTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGATCCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGT                       <  SRR4302540.1667004/94‑1 (MQ=60)

                                                                         CTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTT                      <  SRR4302540.5057132/94‑1 (MQ=60)

                                                                         CTGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTT                      <  SRR4302540.1653705/94‑1 (MQ=60)

                                                                          TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG                     <  SRR4302540.4241161/94‑1 (MQ=60)

                                                                          TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG                     >  SRR4302540.8135462/1‑94 (MQ=60)

                                                                          TGCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTG                     <  SRR4302540.7104143/94‑1 (MQ=60)

                                                                           GCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGC                    <  SRR4302540.7778046/94‑1 (MQ=60)

                                                                           GCAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGC                    >  SRR4302540.780269/1‑94 (MQ=60)

                                                                            CAAGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT                   >  SRR4302540.9249065/1‑94 (MQ=60)

                                                                            CAAGTGGGCATTCGCTGGGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCT                   <  SRR4302540.8795533/94‑1 (MQ=60)

                                                                              AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC                 >  SRR4302540.4804026/1‑94 (MQ=60)

                                                                              AGTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTC                 >  SRR4302540.1125785/1‑94 (MQ=60)

                                                                               GTGGGCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCG                >  SRR4302540.6210521/1‑94 (MQ=60)

                                                                                GGGGCATTCGCTGCGACGTTGATAGTGAACCGTCCCCGGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGG               <  SRR4302540.7182966/94‑1 (MQ=60)

                                                                                  GGGATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCA             <  SRR4302540.8695248/94‑1 (MQ=60)

                                                                                   GCATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCAC            <  SRR4302540.268994/94‑1 (MQ=60)

                                                                                    CATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACC           <  SRR4302540.8031038/94‑1 (MQ=60)

                                                                                    CATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACC           <  SRR4302540.3482033/94‑1 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCTCCT          >  SRR4302540.3289220/1‑94 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT          >  SRR4302540.9490055/1‑94 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT          >  SRR4302540.9591204/1‑94 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT          <  SRR4302540.10083539/94‑1 (MQ=60)

                                                                                     ATTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCT          <  SRR4302540.9795832/94‑1 (MQ=60)

                                                                                      TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT         <  SRR4302540.5484116/94‑1 (MQ=60)

                                                                                      TTCGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTT         <  SRR4302540.9630576/94‑1 (MQ=60)

                                                                                        TGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.6304856/94‑1 (MQ=60)

                                                                                        CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.8497732/94‑1 (MQ=60)

                                                                                        CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.1162119/94‑1 (MQ=60)

                                                                                        CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.3813681/94‑1 (MQ=60)

                                                                                        CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.6304855/94‑1 (MQ=60)

                                                                                        CGCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCACCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCC       <  SRR4302540.8076545/94‑1 (MQ=60)

                                                                                         GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG      >  SRR4302540.1856017/1‑94 (MQ=60)

                                                                                         GCTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCG      <  SRR4302540.10155333/94‑1 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     <  SRR4302540.4087213/94‑1 (MQ=60)

                                                                                          CTGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGC     >  SRR4302540.7110840/1‑94 (MQ=60)

                                                                                           TGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCC    >  SRR4302540.7749005/1‑94 (MQ=60)

                                                                                           TGTGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCC    >  SRR4302540.5608998/1‑94 (MQ=60)

                                                                                           TGTGACGTTGATAGTGAACCGCGCCCCGGTACAATGACGAGCCTCATTCAGGCTGACAAAATGTTCTATCACCGTTGCTTCGTCACCTTACGCC    >  SRR4302540.5381574/1‑94 (MQ=60)

                                                                                             TGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  <  SRR4302540.3235725/94‑1 (MQ=60)

CATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGTTTTCAAACGCCAGCTTGATATGCTGCAAGTGGGCATTCGCTGCGACGTTGATAGTGAACCGTGCCCCGGTAAAATGACGAGCATCATTCAGGCTGACAAAATGTTCGATCACCGTTGCTTCGGCACCTTCCGCCAG  >  NC_000913/1759101‑1759287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`