Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,779,044	A→G	Q207R (CAG→CGG)	ydiR →	putative flavoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,779,044	0	A	G	100.0%	448.4 / NA	142	Q207R (CAG→CGG)	ydiR	putative flavoprotein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/81); total (61/81)

Only 100 of 159 total aligned reads displayed.

TCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGA  >  NC_000913/1778954‑1779133

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         >  1:2595402/1‑93 (MQ=255)

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         >  1:1961338/1‑93 (MQ=255)

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         >  1:785372/1‑93 (MQ=255)

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         <  1:2153802/93‑1 (MQ=255)

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         >  2:5179754/1‑93 (MQ=255)

tctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCggg                                                                                         >  1:2251831/1‑93 (MQ=255)

 ctGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGa                                                                                        <  2:4271001/93‑1 (MQ=255)

  tGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGAt                                                                                       <  1:290528/93‑1 (MQ=255)

  tGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGAt                                                                                       <  2:3747106/93‑1 (MQ=255)

      gcgAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGAcc                                                                                   >  1:3745652/1‑93 (MQ=255)

            gCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTaaaaa                                                                             <  2:4238273/93‑1 (MQ=255)

            gCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTaaaaa                                                                             >  1:1479944/1‑93 (MQ=255)

             ccGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAAt                                                                            >  1:4757231/1‑93 (MQ=255)

              cGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATg                                                                           <  2:4396081/93‑1 (MQ=255)

                ttcGAAAGCCGCAAGCATCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGt                                                                         <  2:4968154/91‑1 (MQ=255)

                tGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGt                                                                         <  1:2816934/93‑1 (MQ=255)

                  cGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTcc                                                                       <  2:4587698/93‑1 (MQ=255)

                  cGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTcc                                                                       <  2:1743852/93‑1 (MQ=255)

                    aaaGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCAc                                                                     >  1:4494980/1‑93 (MQ=255)

                     aaGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACg                                                                    <  2:2123473/93‑1 (MQ=255)

                     aaGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACg                                                                    >  2:1237612/1‑93 (MQ=255)

                      aGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGa                                                                   <  2:5978640/93‑1 (MQ=255)

                      aGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGa                                                                   >  1:4462420/1‑93 (MQ=255)

                       gCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGaa                                                                  <  2:2309168/93‑1 (MQ=255)

                        ccGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAAc                                                                 >  1:4232361/1‑93 (MQ=255)

                         cGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACt                                                                <  1:988449/93‑1 (MQ=255)

                          gCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTg                                                               <  2:793319/93‑1 (MQ=255)

                           cAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTgg                                                              >  1:508840/1‑93 (MQ=255)

                            aaGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggc                                                             <  2:4812836/93‑1 (MQ=255)

                            aaGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggc                                                             <  2:5489790/93‑1 (MQ=255)

                             agcagcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggcg                                                            >  1:2507262/1‑93 (MQ=255)

                             agcagcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggcg                                                            >  2:2545164/1‑93 (MQ=255)

                              gcagcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggcgg                                                           >  1:5044458/1‑93 (MQ=255)

                              gcagcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggcgg                                                           <  1:1347576/93‑1 (MQ=255)

                               cagcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTggcggc                                                          <  2:144628/93‑1 (MQ=255)

                                agcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGgcggcg                                                         >  2:6101299/1‑93 (MQ=255)

                                 gcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGcggcgg                                                        >  2:1906657/1‑93 (MQ=255)

                                 gcGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGcggcgg                                                        <  2:4986390/93‑1 (MQ=255)

                                    tGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgc                                                     >  1:1009025/1‑93 (MQ=255)

                                    tGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgc                                                     <  1:3970902/93‑1 (MQ=255)

                                    tGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgc                                                     <  1:2369568/93‑1 (MQ=255)

                                    gggACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgc                                                     <  2:5334377/92‑1 (MQ=255)

                                     ggACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgct                                                    >  2:2348872/1‑93 (MQ=255)

                                     ggACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgct                                                    <  2:466825/93‑1 (MQ=255)

                                      gACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCCGggctg                                                   >  2:1769428/1‑93 (MQ=255)

                                        ccTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgctgaa                                                 >  1:4919198/1‑93 (MQ=255)

                                         cTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGGTGACCTAAAAATGGTACACGAACTGGCGGCGGtgctgaat                                                >  2:638822/1‑93 (MQ=255)

                                            agcaaagcaaAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGggctgaatgct                                             >  1:1353990/1‑93 (MQ=255)

                                             gcaaagcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgctgaatgctg                                            <  2:3039354/93‑1 (MQ=255)

                                              caaagcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgctgaatgctga                                           <  1:3128587/93‑1 (MQ=255)

                                               aaagcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGtgctgaatgctgaa                                          >  2:4733078/1‑93 (MQ=255)

                                                aagcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAg                                         >  2:707464/1‑93 (MQ=255)

                                                aagcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAg                                         <  1:3573331/93‑1 (MQ=255)

                                                 agcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGt                                        <  1:5288459/93‑1 (MQ=255)

                                                  gcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTc                                       <  1:5914292/93‑1 (MQ=255)

                                                  gcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTc                                       >  2:4325186/1‑93 (MQ=255)

                                                  gcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTc                                       <  1:3057151/93‑1 (MQ=255)

                                                  gcaaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTc                                       <  1:335436/93‑1 (MQ=255)

                                                   caaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCg                                      <  1:1045616/93‑1 (MQ=255)

                                                   caaaACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCg                                      <  1:6086311/93‑1 (MQ=255)

                                                    aaaaCGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCgg                                     >  1:2558351/1‑93 (MQ=255)

                                                     aaaCGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGc                                    >  2:6180100/1‑93 (MQ=255)

                                                     aaaCGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGc                                    <  2:824573/93‑1 (MQ=255)

                                                      aaCGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCt                                   >  1:4782625/1‑93 (MQ=255)

                                                         gtgtGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGtt                                <  2:2114200/93‑1 (MQ=255)

                                                          tgtgGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTc                               >  2:2858043/1‑93 (MQ=255)

                                                          tgtgGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTc                               >  2:4070711/1‑93 (MQ=255)

                                                           gtgGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCa                              <  2:3165923/93‑1 (MQ=255)

                                                              gTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGt                           <  2:6227830/93‑1 (MQ=255)

                                                               ttGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTc                          <  2:5900146/93‑1 (MQ=255)

                                                                 ggCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCa                        <  2:4608466/93‑1 (MQ=255)

                                                                 ggCGTCGGTCGTGGACTGGCGGCGCCGGATGACCTAAAAATGGGCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCa                        <  1:2240287/93‑1 (MQ=255)

                                                                   cGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAAt                      <  1:2148268/93‑1 (MQ=255)

                                                                    gtcggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAAtt                     <  2:1093768/93‑1 (MQ=255)

                                                                    gtcggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAAtt                     <  2:1688934/93‑1 (MQ=255)

                                                                    gtcggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAAtt                     <  1:3705578/93‑1 (MQ=255)

                                                                     tcggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTg                    >  1:5860638/1‑93 (MQ=255)

                                                                     tcggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTg                    <  2:5980539/93‑1 (MQ=255)

                                                                       ggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGACTGCTGAAGTCGGCTGTTCACGTCCAATTGcc                  >  1:1438334/1‑93 (MQ=255)

                                                                       ggtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGcc                  >  2:1423273/1‑93 (MQ=255)

                                                                        gtcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCg                 >  1:2974115/1‑93 (MQ=255)

                                                                         tcgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGa                >  1:6285479/1‑93 (MQ=255)

                                                                          cgTGTACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCTGTGCTGAATGCTGAGGTCGGCTGTTCACGTCCAATTGCCGaa               <  2:377486/93‑1 (MQ=255)

                                                                          cgTGGACTGTCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGaa               <  2:2417837/93‑1 (MQ=255)

                                                                          cgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGaa               <  1:2477793/93‑1 (MQ=255)

                                                                          cgTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGaa               >  1:4616376/1‑93 (MQ=255)

                                                                           gTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAg              <  2:252766/93‑1 (MQ=255)

                                                                           gTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAg              <  2:885646/93‑1 (MQ=255)

                                                                           gTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAg              <  1:4645778/93‑1 (MQ=255)

                                                                           gTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAg              >  1:4683442/1‑93 (MQ=255)

                                                                           gTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAg              <  2:5714158/93‑1 (MQ=255)

                                                                            tGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAgg             >  2:125043/1‑93 (MQ=255)

                                                                              gACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAgggg           >  1:5237464/1‑91 (MQ=255)

                                                                                   gcggcgCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAAc      >  1:5110387/1‑93 (MQ=255)

                                                                                   gcggcgCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAAc      <  1:3403416/93‑1 (MQ=255)

                                                                                   gcggcgCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAAc      >  2:1900779/1‑93 (MQ=255)

                                                                                     ggcgCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACtg    >  2:5695664/1‑93 (MQ=255)

                                                                                       cgcgGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACtgga  <  1:4873353/93‑1 (MQ=255)

                                                                                       cgcgGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACtgga  <  1:4192498/93‑1 (MQ=255)

                                                                                       cgcgGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACtgga  <  1:5859099/93‑1 (MQ=255)

TCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGA  >  NC_000913/1778954‑1779133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGA  >  NC_000913/1778951‑1779137

TTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGGGTCGGTCGTGGACTGGCGGCGCG                                                                                               >  SRR4302533.5372090/1‑94 (MQ=60)

TTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCG                                                                                               <  SRR4302533.645808/94‑1 (MQ=60)

  CTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGG                                                                                             >  SRR4302533.2611353/1‑94 (MQ=60)

  CTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGG                                                                                             >  SRR4302533.789992/1‑94 (MQ=60)

  CTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGG                                                                                             <  SRR4302533.4419425/94‑1 (MQ=60)

  CTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGG                                                                                             >  SRR4302533.2265753/1‑94 (MQ=60)

  CTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGG                                                                                             >  SRR4302533.1973311/1‑94 (MQ=60)

   TCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGA                                                                                            >  SRR4302533.2802600/1‑94 (MQ=60)

   TCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGA                                                                                            <  SRR4302533.2167067/94‑1 (MQ=60)

     TGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATG                                                                                          <  SRR4302533.292296/94‑1 (MQ=60)

      GTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGA                                                                                         >  SRR4302533.4984600/1‑94 (MQ=60)

        CGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACC                                                                                       >  SRR4302533.3768620/1‑94 (MQ=60)

           GAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAA                                                                                    <  SRR4302533.3477134/94‑1 (MQ=60)

              CGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAA                                                                                 >  SRR4302533.1488882/1‑94 (MQ=60)

               GCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAAT                                                                                >  SRR4302533.4786096/1‑94 (MQ=60)

                CCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATG                                                                               >  SRR4302533.2238235/1‑94 (MQ=60)

                 CGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGG                                                                              >  SRR4302533.1932167/1‑94 (MQ=60)

                   TGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTC                                                                            <  SRR4302533.2834274/94‑1 (MQ=60)

                    GCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCC                                                                           >  SRR4302533.5853256/1‑94 (MQ=60)

                     CGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCA                                                                          <  SRR4302533.5968312/94‑1 (MQ=60)

                      GAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCAC                                                                         >  SRR4302533.4522199/1‑94 (MQ=60)

                       AAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACG                                                                        >  SRR4302533.2015354/1‑94 (MQ=60)

                        AAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGA                                                                       >  SRR4302533.4489412/1‑94 (MQ=60)

                          GCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAAC                                                                     >  SRR4302533.4257942/1‑94 (MQ=60)

                            CGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTG                                                                   <  SRR4302533.994233/94‑1 (MQ=60)

                            CGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTG                                                                   <  SRR4302533.2525144/94‑1 (MQ=60)

                            CGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTG                                                                   <  SRR4302533.2437477/94‑1 (MQ=60)

                             GCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGG                                                                  <  SRR4302533.4479008/94‑1 (MQ=60)

                             GCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGG                                                                  >  SRR4302533.511860/1‑94 (MQ=60)

                               AAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCG                                                                >  SRR4302533.2522717/1‑94 (MQ=60)

                                AGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGG                                                               >  SRR4302533.5074981/1‑94 (MQ=60)

                                 GCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGC                                                              <  SRR4302533.1355685/94‑1 (MQ=60)

                                   AGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGG                                                            <  SRR4302533.4688479/94‑1 (MQ=60)

                                    GCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGT                                                           <  SRR4302533.2884005/94‑1 (MQ=60)

                                    GCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGT                                                           <  SRR4302533.1365843/94‑1 (MQ=60)

                                     CGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTG                                                          <  SRR4302533.6336060/94‑1 (MQ=60)

                                      GTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGC                                                         >  SRR4302533.1014929/1‑94 (MQ=60)

                                       TGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCT                                                        <  SRR4302533.2384227/94‑1 (MQ=60)

                                       TGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCT                                                        <  SRR4302533.3995084/94‑1 (MQ=60)

                                          ACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAA                                                     >  SRR4302533.4948996/1‑94 (MQ=60)

                                          ACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAA                                                     >  SRR4302533.2320108/1‑94 (MQ=60)

                                           CCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGAGCTGAAT                                                    >  SRR4302533.3183431/1‑94 (MQ=60)

                                             TGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGC                                                  <  SRR4302533.5914407/94‑1 (MQ=60)

                                              GAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGGGCTGAATGCT                                                 >  SRR4302533.1362129/1‑94 (MQ=60)

                                                 CAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAA                                              <  SRR4302533.3147819/94‑1 (MQ=60)

                                                   AAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGT                                            <  SRR4302533.3595348/94‑1 (MQ=60)

                                                    AGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTC                                           <  SRR4302533.5320131/94‑1 (MQ=60)

                                                     GCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCG                                          <  SRR4302533.3075905/94‑1 (MQ=60)

                                                     GCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCG                                          <  SRR4302533.337486/94‑1 (MQ=60)

                                                     GCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCG                                          <  SRR4302533.5950032/94‑1 (MQ=60)

                                                      CAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGG                                         <  SRR4302533.6123106/94‑1 (MQ=60)

                                                      CAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGG                                         >  SRR4302533.3932831/1‑94 (MQ=60)

                                                      CAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGG                                         >  SRR4302533.2574082/1‑94 (MQ=60)

                                                      CAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGG                                         <  SRR4302533.1051762/94‑1 (MQ=60)

                                                      CAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGG                                         >  SRR4302533.365929/1‑94 (MQ=60)

                                                        AAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCT                                       >  SRR4302533.4811601/1‑94 (MQ=60)

                                                          ACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGT                                     <  SRR4302533.5085910/94‑1 (MQ=60)

                                                               TGGTTGGCGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACG                                >  SRR4302533.454033/1‑94 (MQ=60)

                                                                    GGCGTCGGTCGTGGACTGGCGGCGCCGGATGACCTAAAAATGGGCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAA                           <  SRR4302533.2254132/94‑1 (MQ=60)

                                                                      CGTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATT                         <  SRR4302533.2161499/94‑1 (MQ=60)

                                                                       GTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTG                        >  SRR4302533.5896069/1‑94 (MQ=60)

                                                                       GTCGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTG                        <  SRR4302533.3728340/94‑1 (MQ=60)

                                                                         CGGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGACTGCTGAAGTCGGCTGTTCACGTCCAATTGCC                      >  SRR4302533.1447016/1‑94 (MQ=60)

                                                                          GGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCG                     >  SRR4302533.2992314/1‑94 (MQ=60)

                                                                          GGTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGGTCACGTCCAATTGCCG                     >  SRR4302533.1090428/1‑94 (MQ=60)

                                                                           GTCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGA                    >  SRR4302533.6322982/1‑94 (MQ=60)

                                                                            TCGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAA                   >  SRR4302533.4644330/1‑94 (MQ=60)

                                                                             CGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAG                  <  SRR4302533.2493076/94‑1 (MQ=60)

                                                                             CGTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAG                  >  SRR4302533.4711817/1‑94 (MQ=60)

                                                                              GTGGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGG                 <  SRR4302533.4673933/94‑1 (MQ=60)

                                                                                GGACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGGG               >  SRR4302533.5268953/1‑94 (MQ=60)

                                                                                  ACTGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAG             <  SRR4302533.4775697/94‑1 (MQ=60)

                                                                                    TGGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAA           <  SRR4302533.5200663/94‑1 (MQ=60)

                                                                                     GGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAAC          >  SRR4302533.3054439/1‑94 (MQ=60)

                                                                                     GGCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAAC          >  SRR4302533.5141274/1‑94 (MQ=60)

                                                                                      GCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTTGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACT         <  SRR4302533.4235111/94‑1 (MQ=60)

                                                                                      GCGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACT         <  SRR4302533.3424430/94‑1 (MQ=60)

                                                                                       CGGCGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTG        <  SRR4302533.112018/94‑1 (MQ=60)

                                                                                          CGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGAT     <  SRR4302533.5894519/94‑1 (MQ=60)

                                                                                          CGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGAT     <  SRR4302533.4217874/94‑1 (MQ=60)

                                                                                          CGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGAT     <  SRR4302533.4902882/94‑1 (MQ=60)

                                                                                          CGCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGAT     <  SRR4302533.4902881/94‑1 (MQ=60)

                                                                                           GCGGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATG    <  SRR4302533.2773124/94‑1 (MQ=60)

                                                                                             GGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGA  >  SRR4302533.914838/1‑94 (MQ=60)

TTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGACTGGCGGCGCAGGATGACCTAAAAATGGTCCACGAACTGGCGGCGGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGA  >  NC_000913/1778951‑1779137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`