Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,787,068	G→A	A204T (GCC→ACC)	aroH →	3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,787,068	0	G	A	100.0%	547.0 / NA	157	A204T (GCC→ACC)	aroH	3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (74/83); total (74/83)

Only 100 of 179 total aligned reads displayed.

ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGT  >  NC_000913/1786978‑1787157

aTGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCacc                                                                                         >  2:2130921/1‑93 (MQ=255)

 tGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCacca                                                                                        <  1:2213389/93‑1 (MQ=255)

   gCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagc                                                                                      >  2:68437/1‑93 (MQ=255)

   gCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagc                                                                                      <  1:4291882/93‑1 (MQ=255)

     ttCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagcca                                                                                    >  2:3319010/1‑93 (MQ=255)

      tCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCat                                                                                   <  1:2831495/93‑1 (MQ=255)

       cGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCata                                                                                  <  2:4704175/93‑1 (MQ=255)

         gCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATg                                                                                <  1:4072624/93‑1 (MQ=255)

         gCACTCTCCTGTCCGGTAGGTTTGAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATg                                                                                <  1:2780266/93‑1 (MQ=255)

          cACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGt                                                                               >  1:1967350/1‑93 (MQ=255)

          cACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGt                                                                               <  1:3153975/93‑1 (MQ=255)

           cctctCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGtt                                                                              <  2:6097679/92‑1 (MQ=255)

            ctctCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTc                                                                             <  2:1635116/93‑1 (MQ=255)

             tctcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTcc                                                                            <  1:2418454/93‑1 (MQ=255)

               tcCTGTCCGGTAGGTTTTAAAAATGGTACCGGTGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCctc                                                                          <  1:6202863/93‑1 (MQ=255)

               tcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCctc                                                                          >  2:1185263/1‑93 (MQ=255)

                ccTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCctct                                                                         <  1:5336525/93‑1 (MQ=255)

                  tGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCg                                                                       >  2:2498539/1‑93 (MQ=255)

                     ccGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCa                                                                    <  2:1437616/93‑1 (MQ=255)

                     ccGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCa                                                                    <  1:4217574/93‑1 (MQ=255)

                      cGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAg                                                                   >  1:622057/1‑93 (MQ=255)

                      cGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAg                                                                   >  1:3479608/1‑93 (MQ=255)

                       ggTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGa                                                                  <  1:1725707/93‑1 (MQ=255)

                        gTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAc                                                                 >  1:3045006/1‑93 (MQ=255)

                          aGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaa                                                               >  2:3619565/1‑93 (MQ=255)

                           ggTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaa                                                              <  1:5055867/93‑1 (MQ=255)

                            gTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaa                                                             <  2:3340130/93‑1 (MQ=255)

                            gTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaa                                                             >  1:5763791/1‑93 (MQ=255)

                             ttttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaaa                                                            <  2:2432168/93‑1 (MQ=255)

                              tttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAAt                                                           <  1:3173284/93‑1 (MQ=255)

                              tttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAAt                                                           >  1:5079796/1‑93 (MQ=255)

                                tAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATgg                                                         >  1:4455834/1‑93 (MQ=255)

                                  aaaaTGTTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  1:3980827/93‑1 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  1:1586195/93‑1 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  1:2935963/93‑1 (MQ=255)

                                   aaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCa                                                      <  2:4877186/93‑1 (MQ=255)

                                    aaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAg                                                     >  2:5652436/1‑93 (MQ=255)

                                     aTGGTACCGATGGCAATAAGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGa                                                    <  2:1848010/93‑1 (MQ=255)

                                      tGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAt                                                   >  1:3732705/1‑93 (MQ=255)

                                      tGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAt                                                   <  2:4598914/93‑1 (MQ=255)

                                        gTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGa                                                 <  1:2653250/93‑1 (MQ=255)

                                         tACCGATGGAAATAAGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGAc                                                <  1:2086616/93‑1 (MQ=255)

                                          aCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGAcc                                               <  2:4513473/93‑1 (MQ=255)

                                          aCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGAcc                                               >  2:5777879/1‑93 (MQ=255)

                                           ccGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCa                                              <  2:5847544/93‑1 (MQ=255)

                                           ccGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCa                                              >  2:1672385/1‑93 (MQ=255)

                                             gagggCAATACGGGGATGGTTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATc                                            <  2:3703093/90‑1 (MQ=255)

                                             gATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATc                                            >  2:264643/1‑93 (MQ=255)

                                             gATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATc                                            >  1:544321/1‑93 (MQ=255)

                                             gATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATc                                            >  2:5793954/1‑93 (MQ=255)

                                                ggCAATACGCGGATTGTTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAt                                         <  2:5718971/93‑1 (MQ=255)

                                                 gCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATc                                        <  1:5557603/93‑1 (MQ=255)

                                                  cAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCa                                       <  2:5752402/93‑1 (MQ=255)

                                                   aaTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAg                                      >  2:4084442/1‑93 (MQ=255)

                                                    aTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGa                                     >  1:1876435/1‑93 (MQ=255)

                                                     tACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGAc                                    >  2:3126616/1‑93 (MQ=255)

                                                     tACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGAc                                    <  1:1939100/93‑1 (MQ=255)

                                                        gcgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAg                                 <  2:1698575/93‑1 (MQ=255)

                                                        gcgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAg                                 >  2:4408098/1‑93 (MQ=255)

                                                        gcgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAg                                 <  1:6042654/93‑1 (MQ=255)

                                                        gcgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAg                                 >  1:1643915/1‑93 (MQ=255)

                                                         cgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGc                                <  1:1608650/93‑1 (MQ=255)

                                                         cgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGc                                <  1:2372807/93‑1 (MQ=255)

                                                         cgGATTGCTGTGGATGCTATCCGCGCACCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGc                                <  2:2770243/93‑1 (MQ=255)

                                                          ggATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCg                               <  2:4627839/93‑1 (MQ=255)

                                                          ggATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCg                               <  1:903853/93‑1 (MQ=255)

                                                          ggATTGCTGTGGATGCTATCCGCACAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCg                               <  1:5634961/93‑1 (MQ=255)

                                                            aTTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCTTCTATCAGACCAGCGGc                             >  1:4804673/1‑93 (MQ=255)

                                                              tGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCaa                           >  2:5685583/1‑93 (MQ=255)

                                                              tGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCaa                           <  2:354131/93‑1 (MQ=255)

                                                               gCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAc                          <  1:3594210/93‑1 (MQ=255)

                                                                cTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAcc                         >  1:5579938/1‑93 (MQ=255)

                                                                 tgtgGATGCTATCCGCGCAGCCCGGACCAGCCATATGGTCATCTCGGCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCAGCAAccg                        >  2:3979339/1‑92 (MQ=255)

                                                                 tgtgGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAccc                        >  2:5894017/1‑93 (MQ=255)

                                                                 tgtgGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAccc                        <  2:1000508/93‑1 (MQ=255)

                                                                  gtgGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCg                       >  1:5646154/1‑93 (MQ=255)

                                                                  gtgGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCg                       <  2:396545/93‑1 (MQ=255)

                                                                     gATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAt                    <  2:4281632/93‑1 (MQ=255)

                                                                     gATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAt                    >  1:2743442/1‑93 (MQ=255)

                                                                      aTGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATg                   <  1:1270624/93‑1 (MQ=255)

                                                                      aTGCTATCCGCCCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATg                   >  1:3816688/1‑93 (MQ=255)

                                                                         cTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGcc                <  2:4264625/93‑1 (MQ=255)

                                                                         cTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGcc                <  2:538705/93‑1 (MQ=255)

                                                                           aTCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcac              <  2:5942084/93‑1 (MQ=255)

                                                                            tctgcgcAGCCCGCACCATCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcaca             <  1:1587378/90‑1 (MQ=255)

                                                                            tCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcaca             >  2:1268970/1‑93 (MQ=255)

                                                                            tCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcaca             >  1:820653/1‑93 (MQ=255)

                                                                            cccGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcaca             <  1:3148413/92‑1 (MQ=255)

                                                                             ccGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACat            <  1:686528/93‑1 (MQ=255)

                                                                               gcgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACatta          >  1:4939878/1‑93 (MQ=255)

                                                                                cgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACattat         <  1:1449357/93‑1 (MQ=255)

                                                                                cgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACattat         >  1:2569498/1‑93 (MQ=255)

                                                                                 gcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACGATCTATCAGACCAGCGGCAACCCGTATGGCCACattatt        <  1:4550111/93‑1 (MQ=255)

                                                                                  cAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGGCCATCTATCAGACCAGCGGCAACCCGTATGGCCACAttatta       <  2:2254957/93‑1 (MQ=255)

                                                                                  cAGCCCCCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACAttatta       <  2:1366217/93‑1 (MQ=255)

                                                                                   aGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATtattat      <  1:1224667/93‑1 (MQ=255)

                                                                                   aGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATtattat      >  2:884927/1‑93 (MQ=255)

                                                                                    acccGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATg     <  1:6115339/92‑1 (MQ=255)

                                                                                      ccGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCg   >  2:108121/1‑93 (MQ=255)

                                                                                       cgcaCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGt  <  1:1548996/93‑1 (MQ=255)

ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGT  >  NC_000913/1786978‑1787157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  NC_000913/1786975‑1787161

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCA                                                                                               >  SRR4302533.3885998/1‑94 (MQ=60)

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCA                                                                                               >  SRR4302533.1904397/1‑94 (MQ=60)

 AAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCAC                                                                                              <  SRR4302533.27929/94‑1 (MQ=60)

  AATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACC                                                                                             <  SRR4302533.1441980/94‑1 (MQ=60)

   ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCA                                                                                            <  SRR4302533.3192222/94‑1 (MQ=60)

    TGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAG                                                                                           <  SRR4302533.2227046/94‑1 (MQ=60)

    TGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAG                                                                                           <  SRR4302533.4895617/94‑1 (MQ=60)

      GCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCC                                                                                         <  SRR4302533.4317693/94‑1 (MQ=60)

         TCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATA                                                                                      <  SRR4302533.2848917/94‑1 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   >  SRR4302533.6241733/1‑94 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   <  SRR4302533.4097418/94‑1 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   >  SRR4302533.1979373/1‑94 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTGAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   <  SRR4302533.2797343/94‑1 (MQ=60)

             CACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTT                                                                                  <  SRR4302533.3173364/94‑1 (MQ=60)

                TCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCT                                                                               <  SRR4302533.2433392/94‑1 (MQ=60)

                TCTCCGGTCCGGTAGGTTTTAAAAAGGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCT                                                                               <  SRR4302533.2461441/94‑1 (MQ=60)

                 CTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTC                                                                              <  SRR4302533.5323750/94‑1 (MQ=60)

                  TCCTGTCCGGTAGGTTTTAAAAATGGTACCGGTGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCT                                                                             <  SRR4302533.6240065/94‑1 (MQ=60)

                  TCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCT                                                                             >  SRR4302533.2981605/1‑94 (MQ=60)

                  TCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCT                                                                             >  SRR4302533.1978382/1‑94 (MQ=60)

                   CCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTC                                                                            <  SRR4302533.5368515/94‑1 (MQ=60)

                    CTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCG                                                                           >  SRR4302533.4559812/1‑94 (MQ=60)

                     TGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGC                                                                          <  SRR4302533.4813701/94‑1 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTGCCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       <  SRR4302533.2243011/94‑1 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       >  SRR4302533.2788657/1‑94 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       <  SRR4302533.4243085/94‑1 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       >  SRR4302533.3501077/1‑94 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       >  SRR4302533.625712/1‑94 (MQ=60)

                         CGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGA                                                                      >  SRR4302533.4090700/1‑94 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAC                                                                     <  SRR4302533.1736180/94‑1 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAC                                                                     >  SRR4302533.3063646/1‑94 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAC                                                                     <  SRR4302533.1833379/94‑1 (MQ=60)

                             AGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAA                                                                  <  SRR4302533.2223635/94‑1 (MQ=60)

                              GGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAA                                                                 >  SRR4302533.5798577/1‑94 (MQ=60)

                              GGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAA                                                                 <  SRR4302533.5086427/94‑1 (MQ=60)

                                TTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAAT                                                               >  SRR4302533.5110501/1‑94 (MQ=60)

                                 TTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATG                                                              <  SRR4302533.3192818/94‑1 (MQ=60)

                                  TTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGG                                                             >  SRR4302533.4482777/1‑94 (MQ=60)

                                     AAAATGTTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          <  SRR4302533.4005064/94‑1 (MQ=60)

                                     AAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          <  SRR4302533.1595756/94‑1 (MQ=60)

                                     AAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          <  SRR4302533.2953913/94‑1 (MQ=60)

                                      AAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAG                                                         <  SRR4302533.978685/94‑1 (MQ=60)

                                       AATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGA                                                        >  SRR4302533.5575676/1‑94 (MQ=60)

                                        ATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAT                                                       >  SRR4302533.3755605/1‑94 (MQ=60)

                                        ATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAT                                                       <  SRR4302533.1642632/94‑1 (MQ=60)

                                        ATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCCACAGACAACAATGGGCAGAT                                                       >  SRR4302533.3582969/1‑94 (MQ=60)

                                           GTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGAC                                                    <  SRR4302533.2669549/94‑1 (MQ=60)

                                            TACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACC                                                   <  SRR4302533.3853903/94‑1 (MQ=60)

                                            TACCGATGGAAATAAGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACC                                                   <  SRR4302533.2099465/94‑1 (MQ=60)

                                             ACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCA                                                  >  SRR4302533.2462754/1‑94 (MQ=60)

                                               CGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATC                                                >  SRR4302533.6220036/1‑94 (MQ=60)

                                               CGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATC                                                >  SRR4302533.547553/1‑94 (MQ=60)

                                                GATGGCAATACGCGGATTGCTGTGGATGCTATACGCGCAGCCCGCACCAGCCATATGTTCCTCTCTCCAGACAAAAATGGTAAGATTACGATCT                                               >  SRR4302533.4111095/1‑94 (MQ=60)

                                                 ATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTA                                              >  SRR4302533.3133542/1‑94 (MQ=60)

                                                 ATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTA                                              >  SRR4302533.2758612/1‑94 (MQ=60)

                                                  TGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             <  SRR4302533.5898426/94‑1 (MQ=60)

                                                   GGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATC                                            >  SRR4302533.2921547/1‑94 (MQ=60)

                                                    GCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCA                                           <  SRR4302533.5591190/94‑1 (MQ=60)

                                                     CAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAG                                          >  SRR4302533.3703384/1‑94 (MQ=60)

                                                      AATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGA                                         >  SRR4302533.1589762/1‑94 (MQ=60)

                                                      AATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGA                                         >  SRR4302533.1887872/1‑94 (MQ=60)

                                                        TACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACC                                       <  SRR4302533.1617333/94‑1 (MQ=60)

                                                        TACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACC                                       <  SRR4302533.1950925/94‑1 (MQ=60)

                                                         ACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCA                                      <  SRR4302533.1544463/94‑1 (MQ=60)

                                                          CGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAG                                     <  SRR4302533.6317318/94‑1 (MQ=60)

                                                          CGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAG                                     >  SRR4302533.1653868/1‑94 (MQ=60)

                                                           GCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGC                                    <  SRR4302533.6079264/94‑1 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   <  SRR4302533.1618409/94‑1 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   <  SRR4302533.696648/94‑1 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   <  SRR4302533.2387488/94‑1 (MQ=60)

                                                             GGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGG                                  >  SRR4302533.2383739/1‑94 (MQ=60)

                                                             GGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGG                                  <  SRR4302533.909152/94‑1 (MQ=60)

                                                             GGATTGCTGTGGATGCTATCCGCACAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGG                                  <  SRR4302533.5669038/94‑1 (MQ=60)

                                                              GATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCTTCTATCAGACCAGCGGC                                 >  SRR4302533.4833769/1‑94 (MQ=60)

                                                                  GCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACC                             >  SRR4302533.5613659/1‑94 (MQ=60)

                                                                  GCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACC                             <  SRR4302533.3616324/94‑1 (MQ=60)

                                                                    TGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCG                           >  SRR4302533.5680288/1‑94 (MQ=60)

                                                                       GGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAT                        <  SRR4302533.1990076/94‑1 (MQ=60)

                                                                       GGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAT                        >  SRR4302533.2760264/1‑94 (MQ=60)

                                                                        GATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATG                       <  SRR4302533.5701687/94‑1 (MQ=60)

                                                                        GATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATG                       <  SRR4302533.5388094/94‑1 (MQ=60)

                                                                        GATGCTATCCGCCCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATG                       >  SRR4302533.3840024/1‑94 (MQ=60)

                                                                         ATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGG                      <  SRR4302533.1284738/94‑1 (MQ=60)

                                                                         ATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGG                      <  SRR4302533.1278224/94‑1 (MQ=60)

                                                                         ATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGG                      >  SRR4302533.1697268/1‑94 (MQ=60)

                                                                             TATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCAC                  >  SRR4302533.5677480/1‑94 (MQ=60)

                                                                              ATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACA                 >  SRR4302533.825466/1‑94 (MQ=60)

                                                                              ATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACA                 >  SRR4302533.4998687/1‑94 (MQ=60)

                                                                               TCTGCGCAGCCCGCACCATCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACAT                <  SRR4302533.1596959/94‑1 (MQ=60)

                                                                               CCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACAT                <  SRR4302533.3167768/94‑1 (MQ=60)

                                                                                CCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATT               <  SRR4302533.690587/94‑1 (MQ=60)

                                                                                 CGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTA              >  SRR4302533.4969783/1‑94 (MQ=60)

                                                                                  GCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTAT             >  SRR4302533.2585310/1‑94 (MQ=60)

                                                                                   CGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATT            <  SRR4302533.1458103/94‑1 (MQ=60)

                                                                                    GCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACGATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTA           <  SRR4302533.4577703/94‑1 (MQ=60)

                                                                                     CAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTAT          >  SRR4302533.4253791/1‑94 (MQ=60)

                                                                                      AGCCCGCACCAGCCGTATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATG         >  SRR4302533.3237986/1‑94 (MQ=60)

                                                                                      AGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATG         >  SRR4302533.4213287/1‑94 (MQ=60)

                                                                                      AGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATG         <  SRR4302533.1232008/94‑1 (MQ=60)

                                                                                       ACCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGC        <  SRR4302533.6152235/94‑1 (MQ=60)

                                                                                        CCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCG       >  SRR4302533.2636857/1‑94 (MQ=60)

                                                                                        CCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCG       >  SRR4302533.5619064/1‑94 (MQ=60)

                                                                                          CGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTG     <  SRR4302533.1558334/94‑1 (MQ=60)

                                                                                            CACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGC   <  SRR4302533.6000117/94‑1 (MQ=60)

                                                                                             CCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  <  SRR4302533.3528618/94‑1 (MQ=60)

                                                                                             ACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  SRR4302533.6186383/1‑94 (MQ=60)

                                                                                             ACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  <  SRR4302533.346895/94‑1 (MQ=60)

                                                                                             ACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  SRR4302533.6312738/1‑94 (MQ=60)

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  NC_000913/1786975‑1787161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`