Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,787,068	G→A	A204T (GCC→ACC)	aroH →	3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,787,068	0	G	A	99.0%	684.5 / NA	202	A204T (GCC→ACC)	aroH	3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase
Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (106/93); minor base C (0/2); total (106/96)
Fisher's exact test for biased strand distribution p-value = 2.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 231 total aligned reads displayed.

ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGT  >  NC_000913/1786978‑1787157

 tGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCgcca                                                                                        >  1:9016501/1‑93 (MQ=255)

 tGGCTCCGGCACTCTCCCGTCCGGGAGGGTTTAAAAATGGGACCGAAGGCAATACGCGGATAGCTGGGGATGCGATCCGCGCAGCCCGCacca                                                                                        >  2:7712762/1‑93 (MQ=255)

   gCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagc                                                                                      <  1:2336945/93‑1 (MQ=255)

    cTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagcc                                                                                     <  1:9637932/93‑1 (MQ=255)

     ttCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagcca                                                                                    >  2:9634168/1‑93 (MQ=255)

     ttCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCaccagcca                                                                                    >  1:7957272/1‑93 (MQ=255)

      tCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCat                                                                                   >  2:3947433/1‑93 (MQ=255)

       cGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCata                                                                                  >  2:3594772/1‑93 (MQ=255)

       cGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCata                                                                                  <  1:855090/93‑1 (MQ=255)

        ggCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCatat                                                                                 <  1:8274361/93‑1 (MQ=255)

        ggCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCatat                                                                                 <  2:4261934/93‑1 (MQ=255)

         gCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCCCGCAGCCCGCACCAGCCATATg                                                                                >  1:5485937/1‑93 (MQ=255)

          cACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGt                                                                               <  1:5495303/93‑1 (MQ=255)

           aCTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGtt                                                                              <  1:244968/93‑1 (MQ=255)

           aCTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGtt                                                                              >  2:2314243/1‑93 (MQ=255)

            ctctCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGCTc                                                                             <  1:2779048/93‑1 (MQ=255)

             tctcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGCTcc                                                                            >  2:3491255/1‑93 (MQ=255)

              ctcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCct                                                                           <  1:355107/93‑1 (MQ=255)

              ctcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCct                                                                           <  2:4607562/93‑1 (MQ=255)

               tcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCctc                                                                          >  2:3439004/1‑93 (MQ=255)

               tcCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGAGGATTGCTGCGGATGCTATCCGCGCAGCCCGCACCAGCCATATATTActc                                                                          >  2:865970/1‑93 (MQ=255)

                ccTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGGACCAGCCATATGTTCctct                                                                         >  2:5106705/1‑93 (MQ=255)

                ccTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCctct                                                                         >  1:4834131/1‑93 (MQ=255)

                 cTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCtctc                                                                        <  1:9238533/93‑1 (MQ=255)

                 cTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCtctc                                                                        >  2:318646/1‑93 (MQ=255)

                  tGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCg                                                                       >  1:641632/1‑93 (MQ=255)

                  tGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCACGCACCAGCCATATGTTACTCTCg                                                                       >  2:954035/1‑93 (MQ=255)

                   gTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGc                                                                      >  2:2371964/1‑93 (MQ=255)

                    tCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGcc                                                                     >  1:1146699/1‑93 (MQ=255)

                     ccGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCa                                                                    <  1:3055593/93‑1 (MQ=255)

                      cGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAg                                                                   >  2:2695086/1‑93 (MQ=255)

                       ggTAGGTTTTAAAAATGGTACCGATGGCAATACGAGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGa                                                                  >  2:9161033/1‑93 (MQ=255)

                        gTAGGTTTTAAACATAGTACCGATGGCAATACGCGGATTGCTGTGGCTGCTATCCGCGCAGCCCGCAACAGCCATATGTTCCTCTCGCCAggc                                                                 >  2:4802599/1‑91 (MQ=255)

                        gTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCCTATGCTCCTCTCGCCAGAc                                                                 >  1:1255409/1‑93 (MQ=255)

                        gTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAc                                                                 >  1:2179901/1‑93 (MQ=255)

                         tAGGTTTTAAAAATGGTCCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACa                                                                <  2:1708661/93‑1 (MQ=255)

                         tAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACa                                                                >  2:1811869/1‑93 (MQ=255)

                         tAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACa                                                                >  1:7392686/1‑93 (MQ=255)

                          aGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACAAGCCATATGTTCGTCTCGCCAGACaa                                                               >  2:3734482/1‑93 (MQ=255)

                          aGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAACCCGCACCAGCCATATGTTCCTCTCGCCAGACaa                                                               >  2:7046321/1‑93 (MQ=255)

                           ggTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaa                                                              >  2:8081262/1‑93 (MQ=255)

                            gTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaa                                                             >  1:6215361/1‑93 (MQ=255)

                            gTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaa                                                             >  1:5385131/1‑93 (MQ=255)

                             ttttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACaaaaa                                                            <  2:2052262/93‑1 (MQ=255)

                               ttAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATg                                                          >  2:3297001/1‑93 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  1:1591196/93‑1 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       >  2:5418471/1‑93 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  1:9781692/93‑1 (MQ=255)

                                  aaaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  2:9298756/93‑1 (MQ=255)

                                  aaaaGGGTGCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTc                                                       <  2:5657208/93‑1 (MQ=255)

                                   aaaTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCa                                                      <  2:8461326/93‑1 (MQ=255)

                                     aTGGTCCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTATCGCCAGACAAAAATGGTCAGa                                                    <  1:1821813/93‑1 (MQ=255)

                                     aTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGa                                                    <  1:972790/93‑1 (MQ=255)

                                     aTGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGa                                                    <  2:4954785/93‑1 (MQ=255)

                                      tGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACGAAAATGGTCAGAt                                                   <  1:1071535/93‑1 (MQ=255)

                                       ggTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATg                                                  <  1:4531849/93‑1 (MQ=255)

                                       ggTACCGAGGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATg                                                  <  2:3833456/93‑1 (MQ=255)

                                        gTACCGATGGCAATCCGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGa                                                 <  2:7136218/93‑1 (MQ=255)

                                        gTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGa                                                 >  1:4207468/1‑93 (MQ=255)

                                         tACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGACCGCACCAGCCATATGTTCCCCTCGCCAGACAACAAGCGTAAAATGAc                                                >  1:3126523/1‑93 (MQ=255)

                                            cGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAt                                             >  2:6262816/1‑93 (MQ=255)

                                            cGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAt                                             <  2:4752741/93‑1 (MQ=255)

                                            cGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAt                                             >  2:7895477/1‑93 (MQ=255)

                                              aTGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCt                                           <  1:1415230/93‑1 (MQ=255)

                                               tGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTa                                          >  2:5058068/1‑93 (MQ=255)

                                                 gCAATACGCGGATTGCTGTGTATCCTATCCGCGCAGCCCGCCCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATc                                        <  1:4508882/93‑1 (MQ=255)

                                                 gCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGCTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATc                                        <  2:2512877/93‑1 (MQ=255)

                                                  cAATACGCGGATTTCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCa                                       >  2:5274724/1‑93 (MQ=255)

                                                  cAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCa                                       <  1:9434108/93‑1 (MQ=255)

                                                   aaTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAg                                      >  2:3882163/1‑93 (MQ=255)

                                                   aaTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAg                                      >  2:2207423/1‑93 (MQ=255)

                                                    ttACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAATATGGTCATTTGACCATCTATCAGa                                     >  1:8924500/2‑93 (MQ=255)

                                                    atccgcgGATGGCTGTGGATGCTCTCCGCTCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGa                                     <  2:7766702/90‑1 (MQ=255)

                                                    aTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGa                                     >  1:4047614/1‑93 (MQ=255)

                                                     tACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGAc                                    >  2:1787440/1‑93 (MQ=255)

                                                      aCGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGAcc                                   <  1:7244085/93‑1 (MQ=255)

                                                       cgcgGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCa                                  <  2:1482445/93‑1 (MQ=255)

                                                          ggATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCg                               >  1:219819/1‑93 (MQ=255)

                                                          ggATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATAAGACCAGCg                               >  1:2374441/1‑93 (MQ=255)

                                                           gATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCgg                              <  2:3150487/93‑1 (MQ=255)

                                                             ttGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCa                            <  2:8029526/93‑1 (MQ=255)

                                                                cTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAAcc                         <  2:7427514/93‑1 (MQ=255)

                                                                   tgGATGCTCTCCGCGCAGCCCCCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGt                      <  1:6699958/93‑1 (MQ=255)

                                                                    ggATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTa                     <  2:6352874/93‑1 (MQ=255)

                                                                     gATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAt                    <  2:6123165/93‑1 (MQ=255)

                                                                        gCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGc                 <  2:6527800/93‑1 (MQ=255)

                                                                          tATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCca               >  2:2226619/1‑93 (MQ=255)

                                                                           aTCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcac              >  1:7620090/1‑93 (MQ=255)

                                                                           aTCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCcac              <  2:833312/93‑1 (MQ=255)

                                                                             ccGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACat            >  1:3961905/1‑93 (MQ=255)

                                                                               ccgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACatta          <  1:4731946/92‑1 (MQ=255)

                                                                                cgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCGACCCGTATGGCCACattat         >  2:1418277/1‑93 (MQ=255)

                                                                                cgcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACattat         >  1:1096122/1‑93 (MQ=255)

                                                                                 gcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACattatt        >  1:5116656/1‑93 (MQ=255)

                                                                                 gcAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACattatt        >  1:5965144/1‑93 (MQ=255)

                                                                                  cAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACAttatta       <  1:4463647/93‑1 (MQ=255)

                                                                                    gCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATg     >  2:1350828/1‑93 (MQ=255)

                                                                                     cccGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGc    >  2:3983615/1‑93 (MQ=255)

                                                                                      ccGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCg   <  1:1961877/93‑1 (MQ=255)

                                                                                       cgcaCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGt  <  2:7474941/93‑1 (MQ=255)

ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGT  >  NC_000913/1786978‑1787157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  NC_000913/1786975‑1787161

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCC                                                                                               >  SRR4302540.6508735/1‑94 (MQ=60)

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCA                                                                                               >  SRR4302540.73644/1‑94 (MQ=60)

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCA                                                                                               >  SRR4302540.3764798/1‑94 (MQ=60)

 AAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCAC                                                                                              >  SRR4302540.7801040/1‑94 (MQ=60)

 AAATGGCTTCGGAACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCAC                                                                                              >  SRR4302540.1446991/1‑94 (MQ=60)

  AATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACC                                                                                             >  SRR4302540.613577/1‑94 (MQ=60)

   ATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCA                                                                                            >  SRR4302540.9124692/1‑94 (MQ=60)

      GCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCC                                                                                         <  SRR4302540.2362128/94‑1 (MQ=60)

       CTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCA                                                                                        <  SRR4302540.5820448/94‑1 (MQ=60)

       CTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCA                                                                                        >  SRR4302540.8050026/1‑94 (MQ=60)

       CTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCA                                                                                        <  SRR4302540.9751473/94‑1 (MQ=60)

        TTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCAT                                                                                       >  SRR4302540.1264130/1‑94 (MQ=60)

        TTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCAT                                                                                       >  SRR4302540.4371544/1‑94 (MQ=60)

          CGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATAT                                                                                     >  SRR4302540.1093618/1‑94 (MQ=60)

          CGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATAT                                                                                     <  SRR4302540.864169/94‑1 (MQ=60)

           GGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATG                                                                                    <  SRR4302540.8370481/94‑1 (MQ=60)

           GGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCCCGCAGCCCGCACCAGCCATATG                                                                                    >  SRR4302540.5546327/1‑94 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   >  SRR4302540.9223041/1‑94 (MQ=60)

            GCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGT                                                                                   <  SRR4302540.1848777/94‑1 (MQ=60)

             CACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTT                                                                                  <  SRR4302540.5555804/94‑1 (MQ=60)

             CACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTT                                                                                  <  SRR4302540.2547930/94‑1 (MQ=60)

              ACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTC                                                                                 <  SRR4302540.9796762/94‑1 (MQ=60)

              ACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTC                                                                                 <  SRR4302540.247335/94‑1 (MQ=60)

               CTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCC                                                                                <  SRR4302540.7460119/94‑1 (MQ=60)

               CTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGCTCC                                                                                <  SRR4302540.2809077/94‑1 (MQ=60)

                 CTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTC                                                                              <  SRR4302540.358754/94‑1 (MQ=60)

                 CTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTC                                                                              >  SRR4302540.4582745/1‑94 (MQ=60)

                  TCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCT                                                                             >  SRR4302540.4885919/1‑94 (MQ=60)

                    CTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCG                                                                           >  SRR4302540.8888227/1‑94 (MQ=60)

                    CTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCG                                                                           >  SRR4302540.648467/1‑94 (MQ=60)

                    CTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCG                                                                           >  SRR4302540.9542759/1‑94 (MQ=60)

                    CTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCG                                                                           <  SRR4302540.9349206/94‑1 (MQ=60)

                      GTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCC                                                                         >  SRR4302540.1158666/1‑94 (MQ=60)

                      GTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCC                                                                         >  SRR4302540.1158665/1‑94 (MQ=60)

                       TCCGGTAGTTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCA                                                                        <  SRR4302540.4404226/94‑1 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAG                                                                       <  SRR4302540.3089116/94‑1 (MQ=60)

                        CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATCTTCCTCTCcccaa                                                                       >  SRR4302540.6367143/1‑89 (MQ=60)

                         CGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGA                                                                      <  SRR4302540.538331/94‑1 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCCTATGCTCCTCTCGCCAGAC                                                                     >  SRR4302540.1268272/1‑94 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAC                                                                     >  SRR4302540.2203409/1‑94 (MQ=60)

                          GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGAC                                                                     >  SRR4302540.2136285/1‑94 (MQ=60)

                           GTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACA                                                                    >  SRR4302540.7475064/1‑94 (MQ=60)

                           GTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACA                                                                    >  SRR4302540.4596633/1‑94 (MQ=60)

                            TAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAA                                                                   >  SRR4302540.5236527/1‑94 (MQ=60)

                              GGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAA                                                                 >  SRR4302540.6284517/1‑94 (MQ=60)

                              GGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAA                                                                 >  SRR4302540.5444360/1‑94 (MQ=60)

                                TTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAAT                                                               <  SRR4302540.1919509/94‑1 (MQ=60)

                                    AAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTC                                                           >  SRR4302540.3614207/1‑94 (MQ=60)

                                     AAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          <  SRR4302540.1608580/94‑1 (MQ=60)

                                     AAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          <  SRR4302540.9896330/94‑1 (MQ=60)

                                     AAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCA                                                          >  SRR4302540.9892276/1‑94 (MQ=60)

                                      AAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAG                                                         <  SRR4302540.4011746/94‑1 (MQ=60)

                                        ATGGTCCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTATCGCCAGACAAAAATGGTCAGAT                                                       <  SRR4302540.1841720/94‑1 (MQ=60)

                                        ATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAT                                                       <  SRR4302540.6791477/94‑1 (MQ=60)

                                        ATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGAT                                                       <  SRR4302540.982791/94‑1 (MQ=60)

                                         TGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACGAAAATGGTCAGATG                                                      <  SRR4302540.1082466/94‑1 (MQ=60)

                                          GGTCCCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGA                                                     <  SRR4302540.2218636/94‑1 (MQ=60)

                                          GGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGA                                                     <  SRR4302540.4580898/94‑1 (MQ=60)

                                          GGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGA                                                     <  SRR4302540.4580899/94‑1 (MQ=60)

                                          GGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGA                                                     >  SRR4302540.4253268/1‑94 (MQ=60)

                                          GGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGA                                                     >  SRR4302540.22541/1‑94 (MQ=60)

                                           GTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGACCGCACCAGCCATATGTTCCCCTCGCCAGACAAcaagcgtaaaatgac                                                    >  SRR4302540.3160663/1‑79 (MQ=60)

                                            TACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACC                                                   <  SRR4302540.2407361/94‑1 (MQ=60)

                                              CCGATGGCAATACGCGGATTGCTGTGGAGGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCAT                                                 <  SRR4302540.554705/94‑1 (MQ=60)

                                               CGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATC                                                <  SRR4302540.8205410/94‑1 (MQ=60)

                                                GATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCT                                               <  SRR4302540.6907035/94‑1 (MQ=60)

                                                 ATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTA                                              <  SRR4302540.1430505/94‑1 (MQ=60)

                                                  TGTCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             <  SRR4302540.6522266/94‑1 (MQ=60)

                                                  TGGCAGTACGGGGATGGCTGGGGATGCTATCCGCGCAGCCCGCCCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             <  SRR4302540.1381548/94‑1 (MQ=60)

                                                  TGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             <  SRR4302540.1381549/94‑1 (MQ=60)

                                                  TGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             >  SRR4302540.5169003/1‑94 (MQ=60)

                                                  TGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTAT                                             <  SRR4302540.3213050/94‑1 (MQ=60)

                                                   GGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATC                                            >  SRR4302540.2270093/1‑94 (MQ=60)

                                                    GCAATACGCGGATTGCTGTGTATCCTATCCGCGCAGCCCGCCCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCA                                           <  SRR4302540.4557742/94‑1 (MQ=60)

                                                     CAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAG                                          <  SRR4302540.9546157/94‑1 (MQ=60)

                                                      ATTACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAATATGGTCATTTGACCATCTATCAGA                                         >  SRR4302540.9028189/1‑94 (MQ=60)

                                                      AATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGA                                         >  SRR4302540.991042/1‑94 (MQ=60)

                                                      AATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGA                                         >  SRR4302540.4091257/1‑94 (MQ=60)

                                                        TACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACC                                       <  SRR4302540.3115831/94‑1 (MQ=60)

                                                         ACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCA                                      <  SRR4302540.7324898/94‑1 (MQ=60)

                                                            CGTATGGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   <  SRR4302540.5833647/94‑1 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   >  SRR4302540.221954/1‑94 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCG                                   >  SRR4302540.9610363/1‑94 (MQ=60)

                                                            CGGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATAAGACCAGCG                                   >  SRR4302540.2400025/1‑94 (MQ=60)

                                                             GGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGG                                  >  SRR4302540.9541727/1‑94 (MQ=60)

                                                             GGATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGG                                  >  SRR4302540.2733516/1‑94 (MQ=60)

                                                              gatgcCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGC                                 <  SRR4302540.662947/89‑1 (MQ=60)

                                                              GATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGGCAAAAATGGTCAGATGACCATCTATCAGACCAGCGGC                                 >  SRR4302540.169832/1‑94 (MQ=60)

                                                              GATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGC                                 >  SRR4302540.8530736/1‑94 (MQ=60)

                                                               ATTGCTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCA                                >  SRR4302540.30423/1‑94 (MQ=60)

                                                                   CTGTGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCC                            <  SRR4302540.890500/94‑1 (MQ=60)

                                                                      TGGATGCTCTCCGCGCAGCCCCCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTA                         <  SRR4302540.6773917/94‑1 (MQ=60)

                                                                      TGGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTA                         <  SRR4302540.1556719/94‑1 (MQ=60)

                                                                       GGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAT                        <  SRR4302540.2396442/94‑1 (MQ=60)

                                                                       GGATGCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTAT                        <  SRR4302540.5510406/94‑1 (MQ=60)

                                                                           GCTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCC                    >  SRR4302540.419422/1‑94 (MQ=60)

                                                                            CTATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCA                   <  SRR4302540.7647356/94‑1 (MQ=60)

                                                                             TATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCCGATGACCATCTATCGGCCCAGCGGCAACCCGTATGtaccc                  >  SRR4302540.7705774/1‑89 (MQ=60)

                                                                             TATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCAC                  >  SRR4302540.7705775/1‑94 (MQ=60)

                                                                             TATCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCAC                  <  SRR4302540.3655756/94‑1 (MQ=60)

                                                                               TCCGCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACAT                >  SRR4302540.4004631/1‑94 (MQ=60)

                                                                                  GCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTAT             >  SRR4302540.1107400/1‑94 (MQ=60)

                                                                                  CCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTAT             <  SRR4302540.4782479/94‑1 (MQ=60)

                                                                                  CCGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTAT             <  SRR4302540.4782480/94‑1 (MQ=60)

                                                                                   CGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATT            >  SRR4302540.5172047/1‑94 (MQ=60)

                                                                                   CGCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATT            >  SRR4302540.6031149/1‑94 (MQ=60)

                                                                                   CACAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATAGCCACATTATT            <  SRR4302540.9058318/94‑1 (MQ=60)

                                                                                    GCAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTA           <  SRR4302540.7843607/94‑1 (MQ=60)

                                                                                     CAGCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTAT          <  SRR4302540.4512033/94‑1 (MQ=60)

                                                                                     CAGCCCGCACCAGCCATATGTGCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTAT          <  SRR4302540.4512034/94‑1 (MQ=60)

                                                                                       GCCCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGC        <  SRR4302540.7829940/94‑1 (MQ=60)

                                                                                         CCGCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGT      <  SRR4302540.1983193/94‑1 (MQ=60)

                                                                                           GCACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGG    >  SRR4302540.6324061/1‑94 (MQ=60)

                                                                                            CACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGC   >  SRR4302540.7723485/1‑94 (MQ=60)

                                                                                            CACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGC   >  SRR4302540.7723484/1‑94 (MQ=60)

                                                                                             CCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  <  SRR4302540.9300807/94‑1 (MQ=60)

                                                                                             ACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCCTCTATCAGACCAGCGCGACCCCGTATGGCCACATTATTATGCGTGGCG  >  SRR4302540.8174561/1‑94 (MQ=60)

                                                                                             ACCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  SRR4302540.5202833/1‑94 (MQ=60)

GAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATTGCTGTGGATGCTATCCGCGCAGCCCGCGCCAGCCATATGTTCCTCTCGCCAGACAAAAATGGTCAGATGACCATCTATCAGACCAGCGGCAACCCGTATGGCCACATTATTATGCGTGGCG  >  NC_000913/1786975‑1787161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`