Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,827,618 A→G R47R (CGT→CGC)  b1746 ← putative aldehyde dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,827,6180AG100.0% 595.8 / NA 187R47R (CGT→CGC) b1746putative aldehyde dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (100/87);  total (100/87)

Only 100 of 198 total aligned reads displayed.

GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCAC  >  NC_000913/1827528‑1827707
                                                                                          |                                                                                         
ggCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCcgcgcg                                                                                         >  1:414872/1‑93 (MQ=255)
 gCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCgg                                                                                        <  2:5522780/93‑1 (MQ=255)
 gCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCgg                                                                                        <  1:6273545/93‑1 (MQ=255)
  cTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCggg                                                                                       >  1:2437727/1‑93 (MQ=255)
   tttATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGc                                                                                      >  2:348065/1‑93 (MQ=255)
   tttATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGc                                                                                      >  2:2753621/1‑93 (MQ=255)
    ttATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCt                                                                                     >  1:2001410/1‑93 (MQ=255)
    ttATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCt                                                                                     >  2:4223656/1‑93 (MQ=255)
       ttGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGcc                                                                                  >  2:6137393/1‑93 (MQ=255)
       ttGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGcc                                                                                  >  1:657179/1‑93 (MQ=255)
          cTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGa                                                                               >  1:1596869/1‑93 (MQ=255)
              ccAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAg                                                                           >  2:2921328/1‑93 (MQ=255)
                agcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGcc                                                                         <  1:5396410/93‑1 (MQ=255)
                agcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGcc                                                                         <  2:1763300/93‑1 (MQ=255)
                agcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGcc                                                                         >  1:4339380/1‑93 (MQ=255)
                 gcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCt                                                                        >  2:4173855/1‑93 (MQ=255)
                 gcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCt                                                                        >  1:1377535/1‑93 (MQ=255)
                 gcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCt                                                                        >  2:1636039/1‑93 (MQ=255)
                   agTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGc                                                                      <  1:4576855/93‑1 (MQ=255)
                   agTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGc                                                                      <  2:4461284/93‑1 (MQ=255)
                    gTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCt                                                                     >  1:3869221/1‑93 (MQ=255)
                    gTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCt                                                                     >  2:5563091/1‑93 (MQ=255)
                    gTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCt                                                                     >  2:1955666/1‑93 (MQ=255)
                     ggCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTc                                                                    <  1:3352639/92‑1 (MQ=255)
                       cGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGa                                                                  <  2:4361224/93‑1 (MQ=255)
                        ggCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAc                                                                 >  1:3706768/1‑93 (MQ=255)
                         gCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAcc                                                                <  2:4722007/93‑1 (MQ=255)
                         gCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAcc                                                                <  1:858770/93‑1 (MQ=255)
                         gCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGATGCCCGACAAGCCTGCTCGAcc                                                                >  1:6109758/1‑93 (MQ=255)
                          cAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCt                                                               <  2:1050136/93‑1 (MQ=255)
                           aaaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTg                                                              >  2:910391/1‑93 (MQ=255)
                           aaaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTg                                                              >  2:1193121/1‑93 (MQ=255)
                            aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa                                                             >  1:644899/1‑93 (MQ=255)
                            aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa                                                             >  1:4744493/1‑93 (MQ=255)
                            aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa                                                             >  1:3619461/1‑93 (MQ=255)
                             aGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAg                                                            >  1:4555045/1‑93 (MQ=255)
                             aGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAg                                                            >  2:538224/1‑93 (MQ=255)
                              gCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGc                                                           <  1:1788052/93‑1 (MQ=255)
                                 ttCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggc                                                        >  1:2377222/1‑93 (MQ=255)
                                 ttCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggc                                                        >  2:1447144/1‑93 (MQ=255)
                                   cGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcat                                                      <  2:2884577/93‑1 (MQ=255)
                                   cGACAACGCCATGACATGCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGACCGACAAGCCTGCTCGACCTGAGcggcat                                                      <  1:5469303/93‑1 (MQ=255)
                                    gACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatc                                                     <  1:1057248/93‑1 (MQ=255)
                                     aCAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcg                                                    <  2:1981823/93‑1 (MQ=255)
                                      cAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcgg                                                   <  2:4790527/93‑1 (MQ=255)
                                        aCGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcggca                                                 >  2:145081/1‑93 (MQ=255)
                                        aCGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcggca                                                 >  1:3164602/1‑93 (MQ=255)
                                          ggCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCggcatcggcatc                                               <  1:4551296/93‑1 (MQ=255)
                                           gCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGTCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGcatca                                              <  2:5335863/93‑1 (MQ=255)
                                           gCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGcatca                                              >  2:265149/1‑93 (MQ=255)
                                           gCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGcatca                                              <  2:5761541/93‑1 (MQ=255)
                                            cATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGcatcat                                             <  2:1762069/93‑1 (MQ=255)
                                             aTGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAtt                                            <  1:1603401/93‑1 (MQ=255)
                                              tGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttg                                           >  2:4073227/1‑93 (MQ=255)
                                              tGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttg                                           >  1:3436760/1‑93 (MQ=255)
                                               gACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgc                                          >  2:2019565/1‑93 (MQ=255)
                                                aCGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgcc                                         <  1:4082789/93‑1 (MQ=255)
                                                    tCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgccttgc                                     >  1:3242303/1‑93 (MQ=255)
                                                     cAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgccttgcc                                    >  2:3608822/1‑93 (MQ=255)
                                                       gCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCAt                                  >  1:4152199/1‑93 (MQ=255)
                                                       gCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCAt                                  <  1:5089116/93‑1 (MQ=255)
                                                         aaaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGTCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATaa                                <  2:3649162/93‑1 (MQ=255)
                                                         aaaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGACATaa                                >  1:1326011/1‑93 (MQ=255)
                                                           aTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAaca                              <  1:5976264/93‑1 (MQ=255)
                                                           aTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAaca                              >  2:5400137/1‑93 (MQ=255)
                                                             gAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACAcc                            <  2:3241562/93‑1 (MQ=255)
                                                             gAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACAcc                            <  2:5735894/93‑1 (MQ=255)
                                                              aaaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCt                           >  2:5161492/1‑93 (MQ=255)
                                                              aaaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCt                           <  1:1722395/93‑1 (MQ=255)
                                                              aaaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCt                           <  1:4308948/93‑1 (MQ=255)
                                                              aaaGCCGCGCCCAGCGCGGAAACGCCGCGCGGCCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCt                           <  1:6084881/93‑1 (MQ=255)
                                                               aaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTc                          >  1:2501189/1‑93 (MQ=255)
                                                               aaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTc                          >  1:3650968/1‑93 (MQ=255)
                                                               aaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTc                          <  1:2639845/93‑1 (MQ=255)
                                                               aaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATCGCCTTGCCATAACACCTc                          >  1:3068352/1‑93 (MQ=255)
                                                                 gCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGc                        <  1:1141540/93‑1 (MQ=255)
                                                                  ccGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGcc                       <  2:1674724/93‑1 (MQ=255)
                                                                   cgcgCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGccc                      <  1:5674428/93‑1 (MQ=255)
                                                                    gcgcCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCg                     >  2:6014654/1‑93 (MQ=255)
                                                                    gcgcCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCg                     >  1:4529328/1‑93 (MQ=255)
                                                                      gcCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGAt                   >  1:5280618/1‑93 (MQ=255)
                                                                        ccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAc                 <  2:4753378/93‑1 (MQ=255)
                                                                        ccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAc                 <  1:2084603/93‑1 (MQ=255)
                                                                          aGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCg               >  2:4905143/1‑93 (MQ=255)
                                                                            cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa             <  2:3338099/93‑1 (MQ=255)
                                                                            cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa             <  2:6290554/93‑1 (MQ=255)
                                                                            cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa             >  2:4207346/1‑93 (MQ=255)
                                                                            cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa             <  1:1844808/93‑1 (MQ=255)
                                                                            cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa             <  2:1258179/93‑1 (MQ=255)
                                                                             gcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAt            >  1:2791847/1‑93 (MQ=255)
                                                                              cgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAtt           >  2:2533734/1‑93 (MQ=255)
                                                                                gAACCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTAc         <  1:5625157/93‑1 (MQ=255)
                                                                                gAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTAc         >  1:4426496/1‑93 (MQ=255)
                                                                                gAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTAc         >  2:98735/1‑93 (MQ=255)
                                                                                  aaCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGc       >  1:4988463/1‑93 (MQ=255)
                                                                                  aaCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGc       <  2:154266/93‑1 (MQ=255)
                                                                                   aCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCt      >  1:5926990/1‑93 (MQ=255)
                                                                                   aCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCt      >  1:1829185/1‑93 (MQ=255)
                                                                                     gccgcGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTc    >  2:2433488/1‑93 (MQ=255)
                                                                                      ccgcGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTca   <  1:2244658/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCAC  >  NC_000913/1827528‑1827707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGC  >  NC_000913/1827525‑1827711
                                                                                             |                                                                                             
TTCGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCG                                                                                               <  SRR4302533.2799070/94‑1 (MQ=60)
 TCGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGC                                                                                              >  SRR4302533.988892/1‑94 (MQ=60)
  CGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCG                                                                                             >  SRR4302533.417364/1‑94 (MQ=60)
    GCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGG                                                                                           >  SRR4302533.2452778/1‑94 (MQ=60)
    GCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGG                                                                                           <  SRR4302533.6311015/94‑1 (MQ=60)
     CTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGC                                                                                          <  SRR4302533.3602355/94‑1 (MQ=60)
     CTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGC                                                                                          <  SRR4302533.4495118/94‑1 (MQ=60)
      TTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCT                                                                                         >  SRR4302533.2013734/1‑94 (MQ=60)
        TATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGC                                                                                       <  SRR4302533.5937673/94‑1 (MQ=60)
         ATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCC                                                                                      >  SRR4302533.661056/1‑94 (MQ=60)
            GCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGA                                                                                   >  SRR4302533.1606538/1‑94 (MQ=60)
             CTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGAC                                                                                  >  SRR4302533.4581381/1‑94 (MQ=60)
              TTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAACGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACA                                                                                 <  SRR4302533.6030824/94‑1 (MQ=60)
               TTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAA                                                                                >  SRR4302533.1843950/1‑94 (MQ=60)
                TCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAG                                                                               <  SRR4302533.4800499/94‑1 (MQ=60)
                TCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAG                                                                               >  SRR4302533.4174484/1‑94 (MQ=60)
                 CCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGC                                                                              >  SRR4302533.194075/1‑94 (MQ=60)
                  CAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCC                                                                             <  SRR4302533.2802286/94‑1 (MQ=60)
                  CAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCC                                                                             >  SRR4302533.4365534/1‑94 (MQ=60)
                   AGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCT                                                                            >  SRR4302533.1385821/1‑94 (MQ=60)
                   AGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCT                                                                            <  SRR4302533.4723678/94‑1 (MQ=60)
                   AGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCT                                                                            <  SRR4302533.5428838/94‑1 (MQ=60)
                   AGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCT                                                                            >  SRR4302533.6163724/1‑94 (MQ=60)
                     CAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGC                                                                          <  SRR4302533.839958/94‑1 (MQ=60)
                      AGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCT                                                                         <  SRR4302533.4604593/94‑1 (MQ=60)
                      AGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCT                                                                         >  SRR4302533.3892843/1‑94 (MQ=60)
                      AGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCT                                                                         <  SRR4302533.1380225/94‑1 (MQ=60)
                       GTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTC                                                                        <  SRR4302533.5434360/94‑1 (MQ=60)
                        GGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCG                                                                       <  SRR4302533.3373351/94‑1 (MQ=60)
                          CGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGTCTGCCCGACAAGCCTGCTCGAC                                                                     <  SRR4302533.5999358/94‑1 (MQ=60)
                          CGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAC                                                                     >  SRR4302533.3729535/1‑94 (MQ=60)
                           GGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGATGCCCGACAAGCCTGCTCGACC                                                                    >  SRR4302533.6146641/1‑94 (MQ=60)
                            GCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCT                                                                   <  SRR4302533.863802/94‑1 (MQ=60)
                              AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGGCAAGCCTGCTCGACCTGA                                                                 >  SRR4302533.3641730/1‑94 (MQ=60)
                              AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA                                                                 >  SRR4302533.4773258/1‑94 (MQ=60)
                              AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA                                                                 >  SRR4302533.648695/1‑94 (MQ=60)
                              AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA                                                                 >  SRR4302533.3641729/1‑94 (MQ=60)
                               AAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAG                                                                >  SRR4302533.4582672/1‑94 (MQ=60)
                                 GCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCG                                                              <  SRR4302533.1798921/94‑1 (MQ=60)
                                  CGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGG                                                             >  SRR4302533.3733810/1‑94 (MQ=60)
                                   GTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGC                                                            >  SRR4302533.2391931/1‑94 (MQ=60)
                                   GTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGC                                                            >  SRR4302533.1755181/1‑94 (MQ=60)
                                      CGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATC                                                         <  SRR4302533.4239194/94‑1 (MQ=60)
                                      CGACAACGCCATGACATGCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGACCGACAAGCCTGCTCGACCTGAGCGGCATC                                                         <  SRR4302533.5502266/94‑1 (MQ=60)
                                       GACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCG                                                        <  SRR4302533.1063464/94‑1 (MQ=60)
                                          AACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCA                                                     >  SRR4302533.3184079/1‑94 (MQ=60)
                                          AACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCA                                                     >  SRR4302533.2305685/1‑94 (MQ=60)
                                           ACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCAT                                                    <  SRR4302533.160783/94‑1 (MQ=60)
                                            cgggatgacgtaaagcagacgagAGCCGCGCCTAGCGCGGAAACGCCGCGCGGCCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATC                                                   <  SRR4302533.2054720/71‑1 (MQ=60)
                                             GGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCA                                                  >  SRR4302533.4397831/1‑94 (MQ=60)
                                             GGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCA                                                  <  SRR4302533.4578895/94‑1 (MQ=60)
                                              GCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAT                                                 >  SRR4302533.4595549/1‑94 (MQ=60)
                                              GCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAT                                                 <  SRR4302533.1660452/94‑1 (MQ=60)
                                               CATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATT                                                >  SRR4302533.2052145/1‑94 (MQ=60)
                                                ATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTG                                               <  SRR4302533.2624739/94‑1 (MQ=60)
                                                ATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTG                                               <  SRR4302533.1613108/94‑1 (MQ=60)
                                                ATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTG                                               >  SRR4302533.3457990/1‑94 (MQ=60)
                                                 TGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGC                                              >  SRR4302533.3680442/1‑94 (MQ=60)
                                                   ACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCT                                            <  SRR4302533.4107643/94‑1 (MQ=60)
                                                   ACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCT                                            >  SRR4302533.4161689/1‑94 (MQ=60)
                                                    CGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTT                                           >  SRR4302533.5694567/1‑94 (MQ=60)
                                                    CGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTT                                           <  SRR4302533.1197327/94‑1 (MQ=60)
                                                      TTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGC                                         >  SRR4302533.3262284/1‑94 (MQ=60)
                                                       TCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCC                                        >  SRR4302533.152345/1‑94 (MQ=60)
                                                         AGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCAT                                      >  SRR4302533.4177357/1‑94 (MQ=60)
                                                          GCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATA                                     <  SRR4302533.5119864/94‑1 (MQ=60)
                                                           CAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGACATAA                                    >  SRR4302533.1333966/1‑94 (MQ=60)
                                                            AAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAAC                                   <  SRR4302533.63308/94‑1 (MQ=60)
                                                            AAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAAC                                   <  SRR4302533.2412351/94‑1 (MQ=60)
                                                              ATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACAC                                 <  SRR4302533.6012448/94‑1 (MQ=60)
                                                               TGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCCTAACACC                                >  SRR4302533.2127462/1‑94 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              <  SRR4302533.4334885/94‑1 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              >  SRR4302533.3969770/1‑94 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              >  SRR4302533.2516616/1‑94 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              >  SRR4302533.3673416/1‑94 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              <  SRR4302533.1732839/94‑1 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATCGCCTTGCCATAACACCTC                              >  SRR4302533.3087194/1‑94 (MQ=60)
                                                                 AAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGCCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTC                              <  SRR4302533.6121671/94‑1 (MQ=60)
                                                                  AAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCG                             <  SRR4302533.2656070/94‑1 (MQ=60)
                                                                  AAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCG                             <  SRR4302533.5299333/94‑1 (MQ=60)
                                                                    GCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCC                           <  SRR4302533.1148342/94‑1 (MQ=60)
                                                                      CGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCG                         >  SRR4302533.4556756/1‑94 (MQ=60)
                                                                      CGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCG                         <  SRR4302533.5708697/94‑1 (MQ=60)
                                                                        CGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGAT                       >  SRR4302533.5312260/1‑94 (MQ=60)
                                                                        CGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGAT                       >  SRR4302533.251534/1‑94 (MQ=60)
                                                                         GCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATA                      >  SRR4302533.4574046/1‑94 (MQ=60)
                                                                          CCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAC                     <  SRR4302533.5378163/94‑1 (MQ=60)
                                                                          CCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAC                     >  SRR4302533.3009104/1‑94 (MQ=60)
                                                                           CCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACC                    <  SRR4302533.2097439/94‑1 (MQ=60)
                                                                            CAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCG                   >  SRR4302533.3383862/1‑94 (MQ=60)
                                                                             AGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGG                  >  SRR4302533.5068638/1‑94 (MQ=60)
                                                                             AGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGG                  <  SRR4302533.3341889/94‑1 (MQ=60)
                                                                              GCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGA                 >  SRR4302533.4359779/1‑94 (MQ=60)
                                                                               CGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAT                >  SRR4302533.2809019/1‑94 (MQ=60)
                                                                               CGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAT                <  SRR4302533.1856057/94‑1 (MQ=60)
                                                                                  GGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTAC             >  SRR4302533.4453250/1‑94 (MQ=60)
                                                                                   GAACCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACG            <  SRR4302533.5659155/94‑1 (MQ=60)
                                                                                   GAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACG            <  SRR4302533.1812051/94‑1 (MQ=60)
                                                                                    AAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGC           >  SRR4302533.5018708/1‑94 (MQ=60)
                                                                                     AACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCT          >  SRR4302533.1840353/1‑94 (MQ=60)
                                                                                     AACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCT          >  SRR4302533.5962821/1‑94 (MQ=60)
                                                                                      ACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTT         <  SRR4302533.3139976/94‑1 (MQ=60)
                                                                                       CGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTC        <  SRR4302533.5621373/94‑1 (MQ=60)
                                                                                         CCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCAC      <  SRR4302533.6139582/94‑1 (MQ=60)
                                                                                         CCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCAC      <  SRR4302533.2258529/94‑1 (MQ=60)
                                                                                          CGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACA     >  SRR4302533.1824496/1‑94 (MQ=60)
                                                                                           GCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACAC    >  SRR4302533.3216400/1‑94 (MQ=60)
                                                                                           GCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACAC    <  SRR4302533.6181620/94‑1 (MQ=60)
                                                                                            CGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG   >  SRR4302533.2442339/1‑94 (MQ=60)
                                                                                             GCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGC  <  SRR4302533.6068100/94‑1 (MQ=60)
                                                                                             GCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGC  <  SRR4302533.547346/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTCGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACGC  >  NC_000913/1827525‑1827711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑