Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,837,903 A→G K138R (AAA→AGA)  b1757 → putative thiosulfate sulfur transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,837,9030AG100.0% 723.8 / NA 219K138R (AAA→AGA) b1757putative thiosulfate sulfur transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (112/107);  total (112/107)

Only 100 of 229 total aligned reads displayed.

TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT  >  NC_000913/1837813‑1837992
                                                                                          |                                                                                         
tCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCAAATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAc                                                                                         <  2:2694592/93‑1 (MQ=255)
   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      >  1:5277393/1‑93 (MQ=255)
   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      <  1:1624662/93‑1 (MQ=255)
   aCGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGc                                                                                      <  1:5227477/93‑1 (MQ=255)
    cGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGcc                                                                                     >  1:1985126/1‑93 (MQ=255)
      ccGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGc                                                                                   >  1:2857168/1‑93 (MQ=255)
      ccGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGc                                                                                   >  1:1518410/1‑93 (MQ=255)
         tCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAtt                                                                                <  1:2186732/93‑1 (MQ=255)
         tCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAtt                                                                                >  2:4052186/1‑93 (MQ=255)
          cAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAttt                                                                               >  1:5437004/1‑93 (MQ=255)
           aaaaCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAtttt                                                                              >  1:4513996/1‑93 (MQ=255)
           aaaaCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAgttt                                                                              >  2:3712059/1‑93 (MQ=255)
            aaaCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTg                                                                             <  2:3351581/93‑1 (MQ=255)
            aaaCGCGACTGCAAAAAGCAGGGTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTg                                                                             >  2:5730096/1‑93 (MQ=255)
             aaCGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGa                                                                            <  1:3316011/93‑1 (MQ=255)
                 cgACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGagcag                                                                        <  1:5758820/93‑1 (MQ=255)
                   aCTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCt                                                                      >  1:4409310/1‑93 (MQ=255)
                     tGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTgg                                                                    >  2:21998/1‑93 (MQ=255)
                     tGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTgg                                                                    >  2:5426521/1‑93 (MQ=255)
                     tGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTgg                                                                    >  1:3650413/1‑93 (MQ=255)
                     tGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTgg                                                                    >  2:1090531/1‑93 (MQ=255)
                     tGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTgg                                                                    >  1:1780466/1‑93 (MQ=255)
                      gCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGt                                                                   <  1:1678851/93‑1 (MQ=255)
                      gCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGt                                                                   >  1:60744/1‑93 (MQ=255)
                       cAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGtt                                                                  >  1:2352084/1‑93 (MQ=255)
                        aaaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGttt                                                                 >  1:3134489/1‑93 (MQ=255)
                        aaaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGttt                                                                 >  2:1068927/1‑93 (MQ=255)
                         aaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTa                                                                >  2:3846476/1‑93 (MQ=255)
                         aaaaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTa                                                                <  2:4993960/93‑1 (MQ=255)
                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              <  1:3340841/93‑1 (MQ=255)
                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              <  2:1675522/93‑1 (MQ=255)
                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              <  2:4480661/93‑1 (MQ=255)
                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              >  1:4627982/1‑93 (MQ=255)
                           aaGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATc                                                              <  1:4767965/93‑1 (MQ=255)
                            aGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATcc                                                             >  1:5630390/1‑93 (MQ=255)
                              cAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGc                                                           <  2:5517484/93‑1 (MQ=255)
                                ggTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCaa                                                         <  2:354234/93‑1 (MQ=255)
                                ggTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCaa                                                         >  2:2999073/1‑93 (MQ=255)
                                 gTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAAt                                                        <  2:1630061/93‑1 (MQ=255)
                                  tttAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATg                                                       >  1:918314/1‑93 (MQ=255)
                                     aaCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCt                                                    >  2:2099305/1‑93 (MQ=255)
                                     aaCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCt                                                    >  2:671687/1‑93 (MQ=255)
                                      aCGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTg                                                   <  2:5890366/93‑1 (MQ=255)
                                       cGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGc                                                  >  1:1375787/1‑93 (MQ=255)
                                       cGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGc                                                  >  2:3479472/1‑93 (MQ=255)
                                         cATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCAc                                                <  1:3705763/93‑1 (MQ=255)
                                           tatCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGa                                              >  2:2587864/1‑93 (MQ=255)
                                            atCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAc                                             >  1:3809107/1‑93 (MQ=255)
                                             tctcCATCCTGAGTGACGCGCTAAGCTAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTGATGCGCAATGGCTGCACGAcc                                            >  1:6278502/1‑93 (MQ=255)
                                             tctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAcc                                            >  2:3717962/1‑93 (MQ=255)
                                             tctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAcc                                            <  2:568350/93‑1 (MQ=255)
                                             tctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAcc                                            >  2:6286932/1‑93 (MQ=255)
                                              ctcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCt                                           <  2:4196218/93‑1 (MQ=255)
                                               tcCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTg                                          <  1:5722452/93‑1 (MQ=255)
                                                ccATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGc                                         >  1:1804960/1‑93 (MQ=255)
                                                 cATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTGTTCGCAATGCCTGCACGACCTGca                                        >  1:2080285/1‑93 (MQ=255)
                                                  aTCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaa                                       >  1:4633823/1‑93 (MQ=255)
                                                   tCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaac                                      >  2:5930137/1‑93 (MQ=255)
                                                   tCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaac                                      >  2:3946716/1‑93 (MQ=255)
                                                   tCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGcaac                                      >  1:1199255/1‑93 (MQ=255)
                                                       gAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAgg                                  <  2:2150851/93‑1 (MQ=255)
                                                       gAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAgg                                  >  2:5212602/1‑93 (MQ=255)
                                                         gTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTa                                >  1:928661/1‑93 (MQ=255)
                                                         gTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTa                                <  1:640598/93‑1 (MQ=255)
                                                           gACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTaaa                              <  1:3062705/93‑1 (MQ=255)
                                                           gACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTaaa                              <  2:4846733/93‑1 (MQ=255)
                                                             cgcgCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAaga                            <  1:4055278/93‑1 (MQ=255)
                                                             cgcgCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAaga                            <  1:5108471/93‑1 (MQ=255)
                                                              gcgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAagag                           <  2:1480588/93‑1 (MQ=255)
                                                               cgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAgg                          <  2:3172580/93‑1 (MQ=255)
                                                               cgcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAgg                          <  2:4653745/93‑1 (MQ=255)
                                                                gcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGt                         <  2:1844412/93‑1 (MQ=255)
                                                                gcTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGt                         <  2:4693842/93‑1 (MQ=255)
                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       >  1:5395383/1‑93 (MQ=255)
                                                                  tAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTa                       <  2:5800020/93‑1 (MQ=255)
                                                                   aaGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTAc                      <  1:4333894/93‑1 (MQ=255)
                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  1:3880286/93‑1 (MQ=255)
                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  1:4482674/93‑1 (MQ=255)
                                                                    aGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACg                     <  1:981774/93‑1 (MQ=255)
                                                                     gCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATGCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACgg                    <  1:4437099/93‑1 (MQ=255)
                                                                       gAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCg                  >  1:5033040/1‑93 (MQ=255)
                                                                       gAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCg                  >  1:4927727/1‑93 (MQ=255)
                                                                         aCCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGaa                >  1:718420/1‑93 (MQ=255)
                                                                          ccTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGaaa               <  2:5043056/93‑1 (MQ=255)
                                                                          ccTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGaaa               >  2:5666627/1‑93 (MQ=255)
                                                                           cTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACTGCGAAAc              >  2:5155757/1‑93 (MQ=255)
                                                                           cTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAc              <  2:2257074/93‑1 (MQ=255)
                                                                           cTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAc              <  2:4357700/93‑1 (MQ=255)
                                                                            ttCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAAcc             <  2:2886439/93‑1 (MQ=255)
                                                                             tCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCt            >  1:3439663/1‑93 (MQ=255)
                                                                             tCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCCGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCt            >  1:4242647/1‑93 (MQ=255)
                                                                                cGTCTGCAAAGACTGCCGCATGTTGAGCTGCTGTTTTATCCGCAATGGCTACACGACCTGCAACAAGGTAAAGAGGTTACGGCGCACCCTGcc         <  2:6167076/93‑1 (MQ=255)
                                                                                  tCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCgg       >  1:1641668/1‑93 (MQ=255)
                                                                                    tGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTg     <  2:4288430/93‑1 (MQ=255)
                                                                                     gCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTaaa                              >  1:5494116/1‑67 (MQ=255)
                                                                                     gCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGa    <  1:101486/93‑1 (MQ=255)
                                                                                      cAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAc   <  2:1316944/93‑1 (MQ=255)
                                                                                       aaagaCTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGGACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACt  >  2:5533548/1‑93 (MQ=255)
                                                                                       aaagaCTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACt  >  2:5996050/1‑93 (MQ=255)
                                                                                       aaagaCTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACt  >  1:5943584/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT  >  NC_000913/1837813‑1837992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGGA  >  NC_000913/1837810‑1837995
                                                                                             |                                                                                            
ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAG                                                                                              <  SRR4302533.796300/94‑1 (MQ=60)
  GTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAC                                                                                            <  SRR4302533.5638633/94‑1 (MQ=60)
  GTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGAC                                                                                            <  SRR4302533.4937748/94‑1 (MQ=60)
   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                           <  SRR4302533.1085354/94‑1 (MQ=60)
   TCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACT                                                                                           >  SRR4302533.1976437/1‑94 (MQ=60)
    CGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTG                                                                                          <  SRR4302533.4436492/94‑1 (MQ=60)
    CGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTG                                                                                          <  SRR4302533.4319192/94‑1 (MQ=60)
    CGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTG                                                                                          >  SRR4302533.3360015/1‑94 (MQ=60)
     GACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGC                                                                                         >  SRR4302533.5309028/1‑94 (MQ=60)
      ACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCC                                                                                        <  SRR4302533.1634502/94‑1 (MQ=60)
      ACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCC                                                                                        >  SRR4302533.1997271/1‑94 (MQ=60)
      ACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCC                                                                                        <  SRR4302533.5258929/94‑1 (MQ=60)
        GCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGC                                                                                      >  SRR4302533.2874748/1‑94 (MQ=60)
        GCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGC                                                                                      >  SRR4302533.1527549/1‑94 (MQ=60)
         CCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTNCCCGTCTGCAAAGACTGCCNCA                                                                                     >  SRR4302533.4716136/1‑94 (MQ=60)
          CGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCAT                                                                                    >  SRR4302533.4661422/1‑94 (MQ=60)
           GTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATT                                                                                   <  SRR4302533.1632759/94‑1 (MQ=60)
            TCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTT                                                                                  >  SRR4302533.5469750/1‑94 (MQ=60)
            TCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTT                                                                                  <  SRR4302533.2200207/94‑1 (MQ=60)
             CAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTT                                                                                 >  SRR4302533.4541331/1‑94 (MQ=60)
             CAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTT                                                                                 >  SRR4302533.5768830/1‑94 (MQ=60)
              AAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTG                                                                                <  SRR4302533.4654973/94‑1 (MQ=60)
                AACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAG                                                                              <  SRR4302533.3336486/94‑1 (MQ=60)
                 ACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGC                                                                             >  SRR4302533.5246373/1‑94 (MQ=60)
                    CGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGC                                                                          <  SRR4302533.5793571/94‑1 (MQ=60)
                     GACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCT                                                                         >  SRR4302533.4435937/1‑94 (MQ=60)
                     GACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCT                                                                         >  SRR4302533.4513696/1‑94 (MQ=60)
                       CTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGG                                                                       >  SRR4302533.3672859/1‑94 (MQ=60)
                       CTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGG                                                                       >  SRR4302533.1791304/1‑94 (MQ=60)
                        TGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGT                                                                      >  SRR4302533.61142/1‑94 (MQ=60)
                         GCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTT                                                                     >  SRR4302533.2366635/1‑94 (MQ=60)
                         GCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTT                                                                     <  SRR4302533.1689020/94‑1 (MQ=60)
                          CAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGATCAGCTGGTTT                                                                    <  SRR4302533.359772/94‑1 (MQ=60)
                          CAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTT                                                                    >  SRR4302533.3153763/1‑94 (MQ=60)
                            AAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAT                                                                  <  SRR4302533.4406783/94‑1 (MQ=60)
                            AAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTAT                                                                  <  SRR4302533.1628383/94‑1 (MQ=60)
                             AAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATC                                                                 >  SRR4302533.4656029/1‑94 (MQ=60)
                              AAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCC                                                                >  SRR4302533.3882118/1‑94 (MQ=60)
                              AAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCC                                                                <  SRR4302533.3361489/94‑1 (MQ=60)
                              AAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCC                                                                >  SRR4302533.5664439/1‑94 (MQ=60)
                              AAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCC                                                                <  SRR4302533.4796868/94‑1 (MQ=60)
                                  AGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAA                                                            >  SRR4302533.3420425/1‑94 (MQ=60)
                                   GGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAAT                                                           <  SRR4302533.5962597/94‑1 (MQ=60)
                                   GGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAAT                                                           <  SRR4302533.5361666/94‑1 (MQ=60)
                                   GGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAAT                                                           <  SRR4302533.3806789/94‑1 (MQ=60)
                                    GTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATG                                                          >  SRR4302533.923711/1‑94 (MQ=60)
                                    GTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATG                                                          <  SRR4302533.234907/94‑1 (MQ=60)
                                    GTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATG                                                          <  SRR4302533.951735/94‑1 (MQ=60)
                                         ACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGC                                                     >  SRR4302533.1384068/1‑94 (MQ=60)
                                           GCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCAC                                                   >  SRR4302533.547955/1‑94 (MQ=60)
                                           GCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCAC                                                   >  SRR4302533.4797817/1‑94 (MQ=60)
                                            CATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACG                                                  <  SRR4302533.3728526/94‑1 (MQ=60)
                                              TATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAC                                                >  SRR4302533.3832408/1‑94 (MQ=60)
                                              TATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGAC                                                >  SRR4302533.5081650/1‑94 (MQ=60)
                                               ATCTCCATCCTGAGTGACGCGCTAAGCTAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTGATGCGCAATGGCTGCACGACC                                               >  SRR4302533.6315987/1‑94 (MQ=60)
                                               ATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACC                                               <  SRR4302533.1643788/94‑1 (MQ=60)
                                                 CTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTG                                             >  SRR4302533.1294218/1‑94 (MQ=60)
                                                  TCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGC                                            <  SRR4302533.5757004/94‑1 (MQ=60)
                                                  TCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGC                                            >  SRR4302533.1815949/1‑94 (MQ=60)
                                                  TCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGC                                            <  SRR4302533.3119234/94‑1 (MQ=60)
                                                   CCATCCTGAGTGACGCGCTAAGCGACCCTTCCCGTCTGCAAAGACTCCCGCATTTTGAGCACCTGGTTTATCCGCAATGGCTGCACGACCTGCA                                           >  SRR4302533.624534/1‑94 (MQ=60)
                                                   CCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTGTTCGCAATGCCTGCACGACCTGCA                                           >  SRR4302533.2093083/1‑94 (MQ=60)
                                                   CCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCA                                           >  SRR4302533.1671739/1‑94 (MQ=60)
                                                    CATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAA                                          >  SRR4302533.4661902/1‑94 (MQ=60)
                                                     ATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAAC                                         >  SRR4302533.1206459/1‑94 (MQ=60)
                                                      TCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACA                                        >  SRR4302533.3956044/1‑94 (MQ=60)
                                                      TCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACA                                        >  SRR4302533.174845/1‑94 (MQ=60)
                                                      TCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACA                                        >  SRR4302533.4290662/1‑94 (MQ=60)
                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGATTGCCGCATTTTTAGCAGCTGGTTTATCCGCAATCGCTGCACGACCTGCAACAA                                       >  SRR4302533.4854268/1‑94 (MQ=60)
                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                       >  SRR4302533.4507814/1‑94 (MQ=60)
                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                       >  SRR4302533.3680718/1‑94 (MQ=60)
                                                       CCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAA                                       >  SRR4302533.534166/1‑94 (MQ=60)
                                                        CTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAG                                      <  SRR4302533.4484644/94‑1 (MQ=60)
                                                        CTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAG                                      >  SRR4302533.1759623/1‑94 (MQ=60)
                                                           AGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                   <  SRR4302533.569371/94‑1 (MQ=60)
                                                           AGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                   >  SRR4302533.934114/1‑94 (MQ=60)
                                                           AGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTA                                   >  SRR4302533.4105643/1‑94 (MQ=60)
                                                            GTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAA                                  <  SRR4302533.644365/94‑1 (MQ=60)
                                                              GACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAG                                >  SRR4302533.2082866/1‑94 (MQ=60)
                                                              GACGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAG                                <  SRR4302533.3081506/94‑1 (MQ=60)
                                                                CGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAG                              <  SRR4302533.331366/94‑1 (MQ=60)
                                                                CGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAG                              <  SRR4302533.4079969/94‑1 (MQ=60)
                                                                CGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAG                              <  SRR4302533.5139338/94‑1 (MQ=60)
                                                                CGCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAG                              <  SRR4302533.2137383/94‑1 (MQ=60)
                                                                 GCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                             <  SRR4302533.4764016/94‑1 (MQ=60)
                                                                 GCGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGG                             <  SRR4302533.5466443/94‑1 (MQ=60)
                                                                  CGCTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGT                            >  SRR4302533.181188/1‑94 (MQ=60)
                                                                    CTAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTA                          >  SRR4302533.5427804/1‑94 (MQ=60)
                                                                     TAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTAC                         <  SRR4302533.891694/94‑1 (MQ=60)
                                                                     TAAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTAC                         <  SRR4302533.5268127/94‑1 (MQ=60)
                                                                      AAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACG                        <  SRR4302533.712407/94‑1 (MQ=60)
                                                                      AAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACG                        <  SRR4302533.4360007/94‑1 (MQ=60)
                                                                      AAGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACG                        >  SRR4302533.3440609/1‑94 (MQ=60)
                                                                       AGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGG                       <  SRR4302533.987528/94‑1 (MQ=60)
                                                                       AGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGG                       >  SRR4302533.5095484/1‑94 (MQ=60)
                                                                       AGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGG                       <  SRR4302533.3903961/94‑1 (MQ=60)
                                                                       AGCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGG                       <  SRR4302533.4509819/94‑1 (MQ=60)
                                                                        GCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATGCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGC                      <  SRR4302533.4463921/94‑1 (MQ=60)
                                                                        GCGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGC                      <  SRR4302533.2985674/94‑1 (MQ=60)
                                                                         CGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCG                     >  SRR4302533.5063529/1‑94 (MQ=60)
                                                                         CGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCG                     >  SRR4302533.4957570/1‑94 (MQ=60)
                                                                         CGAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCG                     >  SRR4302533.2681770/1‑94 (MQ=60)
                                                                          GAACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGA                    >  SRR4302533.6327695/1‑94 (MQ=60)
                                                                           AACCTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAA                   >  SRR4302533.722660/1‑94 (MQ=60)
                                                                              CTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACC                <  SRR4302533.5715643/94‑1 (MQ=60)
                                                                              CTTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACC                >  SRR4302533.6002551/1‑94 (MQ=60)
                                                                               TTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCT               >  SRR4302533.3460906/1‑94 (MQ=60)
                                                                               TTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCT               <  SRR4302533.925348/94‑1 (MQ=60)
                                                                               TTCCCGTCTGCAAAGACTGCCGCATTTTGAGCAGCCGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCT               >  SRR4302533.4268263/1‑94 (MQ=60)
                                                                                  CCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCC            <  SRR4302533.1495558/94‑1 (MQ=60)
                                                                                  CCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCC            <  SRR4302533.5045923/94‑1 (MQ=60)
                                                                                  CCGTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCC            <  SRR4302533.5542327/94‑1 (MQ=60)
                                                                                    GTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGG          >  SRR4302533.1651612/1‑94 (MQ=60)
                                                                                    GTCTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGG          >  SRR4302533.3802669/1‑94 (MQ=60)
                                                                                      CTGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTG        >  SRR4302533.5998536/1‑94 (MQ=60)
                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAtacagcagatcggaagagcggttc       >  SRR4302533.5527260/1‑70 (MQ=60)
                                                                                       TGCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGA       >  SRR4302533.6141544/1‑94 (MQ=60)
                                                                                        GCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAC      <  SRR4302533.102116/94‑1 (MQ=60)
                                                                                        GCAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGAC      <  SRR4302533.881232/94‑1 (MQ=60)
                                                                                         CAAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACT     >  SRR4302533.5979531/1‑94 (MQ=60)
                                                                                          AAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTG    <  SRR4302533.2991813/94‑1 (MQ=60)
                                                                                          AAAGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTG    <  SRR4302533.2112256/94‑1 (MQ=60)
                                                                                            AGACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGGA  >  SRR4302533.1328000/1‑94 (MQ=60)
                                                                                             |                                                                                            
ATGTCGACGCCGTCAAAACGCGACTGCAAAAAGCAGGTTTAACGCATATCTCCATCCTGAGTGACGCGCTAAGCGAACCTTCCCGTCTGCAAAAACTGCCGCATTTTGAGCAGCTGGTTTATCCGCAATGGCTGCACGACCTGCAACAAGGTAAAGAGGTTACGGCGAAACCTGCCGGTGACTGGA  >  NC_000913/1837810‑1837995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑